co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0010392: galactoglucomannan metabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0019323: pentose catabolic process	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0051070: galactomannan biosynthetic process	0.00E+00
7	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0040008: regulation of growth	7.28E-05
11	GO:0016123: xanthophyll biosynthetic process	1.34E-04
12	GO:0015995: chlorophyll biosynthetic process	1.43E-04
13	GO:0030488: tRNA methylation	2.60E-04
14	GO:0042759: long-chain fatty acid biosynthetic process	3.75E-04
15	GO:1902458: positive regulation of stomatal opening	3.75E-04
16	GO:0000025: maltose catabolic process	3.75E-04
17	GO:0006438: valyl-tRNA aminoacylation	3.75E-04
18	GO:0070509: calcium ion import	3.75E-04
19	GO:0044262: cellular carbohydrate metabolic process	3.75E-04
20	GO:0010480: microsporocyte differentiation	3.75E-04
21	GO:0046620: regulation of organ growth	4.22E-04
22	GO:0009733: response to auxin	4.61E-04
23	GO:0006779: porphyrin-containing compound biosynthetic process	7.31E-04
24	GO:0009786: regulation of asymmetric cell division	8.15E-04
25	GO:0031648: protein destabilization	8.15E-04
26	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.15E-04
27	GO:2000123: positive regulation of stomatal complex development	8.15E-04
28	GO:0010024: phytochromobilin biosynthetic process	8.15E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.15E-04
30	GO:0019388: galactose catabolic process	8.15E-04
31	GO:0018026: peptidyl-lysine monomethylation	8.15E-04
32	GO:1900033: negative regulation of trichome patterning	8.15E-04
33	GO:0009641: shade avoidance	8.52E-04
34	GO:0006782: protoporphyrinogen IX biosynthetic process	8.52E-04
35	GO:0005983: starch catabolic process	1.12E-03
36	GO:0006006: glucose metabolic process	1.27E-03
37	GO:0006696: ergosterol biosynthetic process	1.32E-03
38	GO:1902448: positive regulation of shade avoidance	1.32E-03
39	GO:0010581: regulation of starch biosynthetic process	1.32E-03
40	GO:0080055: low-affinity nitrate transport	1.32E-03
41	GO:0070588: calcium ion transmembrane transport	1.60E-03
42	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.67E-03
43	GO:0010025: wax biosynthetic process	1.78E-03
44	GO:0051513: regulation of monopolar cell growth	1.91E-03
45	GO:0007231: osmosensory signaling pathway	1.91E-03
46	GO:0009102: biotin biosynthetic process	1.91E-03
47	GO:0010239: chloroplast mRNA processing	1.91E-03
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.91E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.91E-03
50	GO:1990019: protein storage vacuole organization	1.91E-03
51	GO:0046739: transport of virus in multicellular host	1.91E-03
52	GO:0009590: detection of gravity	1.91E-03
53	GO:0006631: fatty acid metabolic process	2.22E-03
54	GO:0048629: trichome patterning	2.56E-03
55	GO:0010109: regulation of photosynthesis	2.56E-03
56	GO:0009765: photosynthesis, light harvesting	2.56E-03
57	GO:0033500: carbohydrate homeostasis	2.56E-03
58	GO:2000038: regulation of stomatal complex development	2.56E-03
59	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.86E-03
60	GO:0009793: embryo development ending in seed dormancy	3.01E-03
61	GO:0045038: protein import into chloroplast thylakoid membrane	3.28E-03
62	GO:0048497: maintenance of floral organ identity	3.28E-03
63	GO:0010375: stomatal complex patterning	3.28E-03
64	GO:0000304: response to singlet oxygen	3.28E-03
65	GO:0016120: carotene biosynthetic process	3.28E-03
66	GO:0010405: arabinogalactan protein metabolic process	4.05E-03
67	GO:0016554: cytidine to uridine editing	4.05E-03
68	GO:0009913: epidermal cell differentiation	4.05E-03
69	GO:0006655: phosphatidylglycerol biosynthetic process	4.05E-03
70	GO:1902456: regulation of stomatal opening	4.05E-03
71	GO:0042793: transcription from plastid promoter	4.05E-03
72	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.05E-03
73	GO:0033365: protein localization to organelle	4.05E-03
74	GO:0009658: chloroplast organization	4.72E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	4.88E-03
76	GO:0071333: cellular response to glucose stimulus	4.88E-03
77	GO:0042372: phylloquinone biosynthetic process	4.88E-03
78	GO:1901259: chloroplast rRNA processing	4.88E-03
79	GO:0017148: negative regulation of translation	4.88E-03
80	GO:0032502: developmental process	5.18E-03
81	GO:0009734: auxin-activated signaling pathway	5.72E-03
82	GO:0015693: magnesium ion transport	5.77E-03
83	GO:0048528: post-embryonic root development	5.77E-03
84	GO:0048437: floral organ development	5.77E-03
85	GO:0010444: guard mother cell differentiation	5.77E-03
86	GO:0009828: plant-type cell wall loosening	5.88E-03
87	GO:2000070: regulation of response to water deprivation	6.70E-03
88	GO:0000105: histidine biosynthetic process	6.70E-03
89	GO:0009231: riboflavin biosynthetic process	6.70E-03
90	GO:0005978: glycogen biosynthetic process	6.70E-03
91	GO:0001522: pseudouridine synthesis	6.70E-03
92	GO:0006353: DNA-templated transcription, termination	6.70E-03
93	GO:0006605: protein targeting	6.70E-03
94	GO:0010027: thylakoid membrane organization	7.02E-03
95	GO:0015996: chlorophyll catabolic process	7.69E-03
96	GO:0019430: removal of superoxide radicals	7.69E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	7.69E-03
98	GO:0010497: plasmodesmata-mediated intercellular transport	7.69E-03
99	GO:0009657: plastid organization	7.69E-03
100	GO:0006526: arginine biosynthetic process	7.69E-03
101	GO:0032544: plastid translation	7.69E-03
102	GO:0000902: cell morphogenesis	8.73E-03
103	GO:0051865: protein autoubiquitination	8.73E-03
104	GO:0046916: cellular transition metal ion homeostasis	8.73E-03
105	GO:0009817: defense response to fungus, incompatible interaction	9.17E-03
106	GO:0009813: flavonoid biosynthetic process	9.64E-03
107	GO:0009638: phototropism	9.82E-03
108	GO:0042761: very long-chain fatty acid biosynthetic process	9.82E-03
109	GO:1900865: chloroplast RNA modification	9.82E-03
110	GO:0010380: regulation of chlorophyll biosynthetic process	9.82E-03
111	GO:0071555: cell wall organization	1.00E-02
112	GO:0048829: root cap development	1.10E-02
113	GO:0006949: syncytium formation	1.10E-02
114	GO:0010192: mucilage biosynthetic process	1.10E-02
115	GO:0010629: negative regulation of gene expression	1.10E-02
116	GO:0016042: lipid catabolic process	1.13E-02
117	GO:0018119: peptidyl-cysteine S-nitrosylation	1.21E-02
118	GO:0048229: gametophyte development	1.21E-02
119	GO:0006816: calcium ion transport	1.21E-02
120	GO:0009073: aromatic amino acid family biosynthetic process	1.21E-02
121	GO:0043085: positive regulation of catalytic activity	1.21E-02
122	GO:0006415: translational termination	1.21E-02
123	GO:0030001: metal ion transport	1.33E-02
124	GO:0016024: CDP-diacylglycerol biosynthetic process	1.34E-02
125	GO:0045037: protein import into chloroplast stroma	1.34E-02
126	GO:0050826: response to freezing	1.46E-02
127	GO:0010075: regulation of meristem growth	1.46E-02
128	GO:0009725: response to hormone	1.46E-02
129	GO:0010588: cotyledon vascular tissue pattern formation	1.46E-02
130	GO:2000012: regulation of auxin polar transport	1.46E-02
131	GO:0030048: actin filament-based movement	1.46E-02
132	GO:0009785: blue light signaling pathway	1.46E-02
133	GO:0009926: auxin polar transport	1.51E-02
134	GO:0009934: regulation of meristem structural organization	1.59E-02
135	GO:0010020: chloroplast fission	1.59E-02
136	GO:0010207: photosystem II assembly	1.59E-02
137	GO:0000162: tryptophan biosynthetic process	1.87E-02
138	GO:0009664: plant-type cell wall organization	1.89E-02
139	GO:0006418: tRNA aminoacylation for protein translation	2.15E-02
140	GO:0048511: rhythmic process	2.30E-02
141	GO:0031408: oxylipin biosynthetic process	2.30E-02
142	GO:0009735: response to cytokinin	2.44E-02
143	GO:0030245: cellulose catabolic process	2.46E-02
144	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.46E-02
145	GO:0010082: regulation of root meristem growth	2.62E-02
146	GO:0009294: DNA mediated transformation	2.62E-02
147	GO:0010214: seed coat development	2.78E-02
148	GO:0006284: base-excision repair	2.78E-02
149	GO:0009416: response to light stimulus	2.79E-02
150	GO:0016117: carotenoid biosynthetic process	2.94E-02
151	GO:0006396: RNA processing	2.98E-02
152	GO:0009742: brassinosteroid mediated signaling pathway	3.07E-02
153	GO:0000413: protein peptidyl-prolyl isomerization	3.11E-02
154	GO:0010087: phloem or xylem histogenesis	3.11E-02
155	GO:0010118: stomatal movement	3.11E-02
156	GO:0048653: anther development	3.11E-02
157	GO:0080022: primary root development	3.11E-02
158	GO:0045454: cell redox homeostasis	3.25E-02
159	GO:0010182: sugar mediated signaling pathway	3.28E-02
160	GO:0006520: cellular amino acid metabolic process	3.28E-02
161	GO:0010305: leaf vascular tissue pattern formation	3.28E-02
162	GO:0045892: negative regulation of transcription, DNA-templated	3.31E-02
163	GO:0007018: microtubule-based movement	3.45E-02
164	GO:0042752: regulation of circadian rhythm	3.45E-02
165	GO:0009646: response to absence of light	3.45E-02
166	GO:0048544: recognition of pollen	3.45E-02
167	GO:0019252: starch biosynthetic process	3.63E-02
168	GO:0048825: cotyledon development	3.63E-02
169	GO:0009058: biosynthetic process	3.82E-02
170	GO:0016032: viral process	3.99E-02
171	GO:0010090: trichome morphogenesis	4.17E-02
172	GO:0007267: cell-cell signaling	4.55E-02
173	GO:0009409: response to cold	4.71E-02
174	GO:0051607: defense response to virus	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0047661: amino-acid racemase activity	0.00E+00
10	GO:0005504: fatty acid binding	2.21E-05
11	GO:0043023: ribosomal large subunit binding	4.86E-05
12	GO:0045430: chalcone isomerase activity	8.61E-05
13	GO:0004832: valine-tRNA ligase activity	3.75E-04
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.75E-04
15	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.75E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	3.75E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.75E-04
18	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.75E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.75E-04
20	GO:0050308: sugar-phosphatase activity	3.75E-04
21	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.75E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	3.75E-04
23	GO:0019203: carbohydrate phosphatase activity	3.75E-04
24	GO:0004750: ribulose-phosphate 3-epimerase activity	8.15E-04
25	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.15E-04
26	GO:0004614: phosphoglucomutase activity	8.15E-04
27	GO:0005262: calcium channel activity	1.27E-03
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.32E-03
29	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.32E-03
30	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.32E-03
31	GO:0070330: aromatase activity	1.32E-03
32	GO:0003913: DNA photolyase activity	1.32E-03
33	GO:0001872: (1->3)-beta-D-glucan binding	1.91E-03
34	GO:0016851: magnesium chelatase activity	1.91E-03
35	GO:0016149: translation release factor activity, codon specific	1.91E-03
36	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.56E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	2.56E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.56E-03
39	GO:0019199: transmembrane receptor protein kinase activity	2.56E-03
40	GO:0008725: DNA-3-methyladenine glycosylase activity	3.28E-03
41	GO:0018685: alkane 1-monooxygenase activity	3.28E-03
42	GO:0009055: electron carrier activity	3.55E-03
43	GO:2001070: starch binding	4.05E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.05E-03
45	GO:0016208: AMP binding	4.05E-03
46	GO:0051920: peroxiredoxin activity	4.88E-03
47	GO:0051753: mannan synthase activity	4.88E-03
48	GO:0005507: copper ion binding	5.04E-03
49	GO:0009881: photoreceptor activity	5.77E-03
50	GO:0030674: protein binding, bridging	6.70E-03
51	GO:0016209: antioxidant activity	6.70E-03
52	GO:0046914: transition metal ion binding	7.69E-03
53	GO:0008173: RNA methyltransferase activity	7.69E-03
54	GO:0003747: translation release factor activity	8.73E-03
55	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.73E-03
56	GO:0008047: enzyme activator activity	1.10E-02
57	GO:0003746: translation elongation factor activity	1.17E-02
58	GO:0008378: galactosyltransferase activity	1.34E-02
59	GO:0015095: magnesium ion transmembrane transporter activity	1.46E-02
60	GO:0009982: pseudouridine synthase activity	1.46E-02
61	GO:0015266: protein channel activity	1.46E-02
62	GO:0003774: motor activity	1.59E-02
63	GO:0008266: poly(U) RNA binding	1.59E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.59E-02
65	GO:0043621: protein self-association	1.63E-02
66	GO:0035091: phosphatidylinositol binding	1.63E-02
67	GO:0016787: hydrolase activity	1.71E-02
68	GO:0003712: transcription cofactor activity	1.73E-02
69	GO:0008146: sulfotransferase activity	1.73E-02
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.76E-02
71	GO:0004674: protein serine/threonine kinase activity	1.98E-02
72	GO:0051536: iron-sulfur cluster binding	2.01E-02
73	GO:0005528: FK506 binding	2.01E-02
74	GO:0016298: lipase activity	2.11E-02
75	GO:0043424: protein histidine kinase binding	2.15E-02
76	GO:0004176: ATP-dependent peptidase activity	2.30E-02
77	GO:0033612: receptor serine/threonine kinase binding	2.30E-02
78	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.48E-02
79	GO:0030570: pectate lyase activity	2.62E-02
80	GO:0008810: cellulase activity	2.62E-02
81	GO:0004650: polygalacturonase activity	2.65E-02
82	GO:0052689: carboxylic ester hydrolase activity	2.94E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	2.94E-02
84	GO:0001085: RNA polymerase II transcription factor binding	3.28E-02
85	GO:0004871: signal transducer activity	3.44E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	3.45E-02
87	GO:0016853: isomerase activity	3.45E-02
88	GO:0019901: protein kinase binding	3.63E-02
89	GO:0004872: receptor activity	3.63E-02
90	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.72E-02
91	GO:0016829: lyase activity	3.92E-02
92	GO:0004518: nuclease activity	3.99E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.17E-02
94	GO:0000156: phosphorelay response regulator activity	4.17E-02
95	GO:0008483: transaminase activity	4.55E-02
96	GO:0008237: metallopeptidase activity	4.55E-02
97	GO:0005200: structural constituent of cytoskeleton	4.55E-02
98	GO:0046983: protein dimerization activity	4.61E-02
99	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.65E-02
100	GO:0004519: endonuclease activity	4.66E-02
101	GO:0016597: amino acid binding	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.63E-17
2	GO:0009570: chloroplast stroma	5.66E-15
3	GO:0009941: chloroplast envelope	5.56E-09
4	GO:0009534: chloroplast thylakoid	2.18E-08
5	GO:0009579: thylakoid	6.62E-05
6	GO:0010319: stromule	8.58E-05
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.15E-04
8	GO:0046658: anchored component of plasma membrane	8.24E-04
9	GO:0009528: plastid inner membrane	1.32E-03
10	GO:0010007: magnesium chelatase complex	1.32E-03
11	GO:0030139: endocytic vesicle	1.32E-03
12	GO:0009543: chloroplast thylakoid lumen	1.48E-03
13	GO:0031969: chloroplast membrane	1.57E-03
14	GO:0031225: anchored component of membrane	1.89E-03
15	GO:0032585: multivesicular body membrane	1.91E-03
16	GO:0031977: thylakoid lumen	2.22E-03
17	GO:0009532: plastid stroma	2.39E-03
18	GO:0009527: plastid outer membrane	2.56E-03
19	GO:0005886: plasma membrane	2.95E-03
20	GO:0009986: cell surface	5.77E-03
21	GO:0009533: chloroplast stromal thylakoid	5.77E-03
22	GO:0009501: amyloplast	6.70E-03
23	GO:0009535: chloroplast thylakoid membrane	7.34E-03
24	GO:0016459: myosin complex	1.10E-02
25	GO:0090404: pollen tube tip	1.21E-02
26	GO:0000311: plastid large ribosomal subunit	1.34E-02
27	GO:0009508: plastid chromosome	1.46E-02
28	GO:0043234: protein complex	1.87E-02
29	GO:0009654: photosystem II oxygen evolving complex	2.15E-02
30	GO:0042651: thylakoid membrane	2.15E-02
31	GO:0005874: microtubule	2.48E-02
32	GO:0015629: actin cytoskeleton	2.62E-02
33	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.78E-02
34	GO:0005871: kinesin complex	2.94E-02
35	GO:0019898: extrinsic component of membrane	3.63E-02
36	GO:0009536: plastid	4.01E-02
37	GO:0005778: peroxisomal membrane	4.55E-02
38	GO:0009295: nucleoid	4.55E-02
39	GO:0030529: intracellular ribonucleoprotein complex	4.94E-02