co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:1905177: tracheary element differentiation	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
11	GO:2000469: negative regulation of peroxidase activity	0.00E+00
12	GO:0030155: regulation of cell adhesion	0.00E+00
13	GO:0090706: specification of plant organ position	0.00E+00
14	GO:0045038: protein import into chloroplast thylakoid membrane	6.96E-07
15	GO:0009733: response to auxin	2.85E-06
16	GO:0046620: regulation of organ growth	5.79E-06
17	GO:2001141: regulation of RNA biosynthetic process	2.63E-05
18	GO:0010236: plastoquinone biosynthetic process	7.56E-05
19	GO:0016123: xanthophyll biosynthetic process	7.56E-05
20	GO:0009734: auxin-activated signaling pathway	1.18E-04
21	GO:0007275: multicellular organism development	1.45E-04
22	GO:0040008: regulation of growth	1.72E-04
23	GO:0016117: carotenoid biosynthetic process	1.86E-04
24	GO:0030307: positive regulation of cell growth	1.99E-04
25	GO:0009664: plant-type cell wall organization	2.45E-04
26	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.65E-04
27	GO:0015969: guanosine tetraphosphate metabolic process	2.65E-04
28	GO:0070509: calcium ion import	2.65E-04
29	GO:0043266: regulation of potassium ion transport	2.65E-04
30	GO:0010063: positive regulation of trichoblast fate specification	2.65E-04
31	GO:2000021: regulation of ion homeostasis	2.65E-04
32	GO:0051247: positive regulation of protein metabolic process	2.65E-04
33	GO:1902458: positive regulation of stomatal opening	2.65E-04
34	GO:2000905: negative regulation of starch metabolic process	2.65E-04
35	GO:0010450: inflorescence meristem growth	2.65E-04
36	GO:0006419: alanyl-tRNA aminoacylation	2.65E-04
37	GO:0071482: cellular response to light stimulus	3.10E-04
38	GO:0000373: Group II intron splicing	3.74E-04
39	GO:0009828: plant-type cell wall loosening	3.96E-04
40	GO:0009658: chloroplast organization	4.34E-04
41	GO:1900865: chloroplast RNA modification	4.44E-04
42	GO:0060359: response to ammonium ion	5.83E-04
43	GO:0048255: mRNA stabilization	5.83E-04
44	GO:1900871: chloroplast mRNA modification	5.83E-04
45	GO:1901959: positive regulation of cutin biosynthetic process	5.83E-04
46	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.83E-04
47	GO:0006352: DNA-templated transcription, initiation	5.99E-04
48	GO:2000012: regulation of auxin polar transport	7.76E-04
49	GO:0010207: photosystem II assembly	8.73E-04
50	GO:0048586: regulation of long-day photoperiodism, flowering	9.47E-04
51	GO:1904278: positive regulation of wax biosynthetic process	9.47E-04
52	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.47E-04
53	GO:0010623: programmed cell death involved in cell development	9.47E-04
54	GO:0006696: ergosterol biosynthetic process	9.47E-04
55	GO:0090153: regulation of sphingolipid biosynthetic process	9.47E-04
56	GO:0043157: response to cation stress	9.47E-04
57	GO:0005977: glycogen metabolic process	9.47E-04
58	GO:0045165: cell fate commitment	9.47E-04
59	GO:0048281: inflorescence morphogenesis	9.47E-04
60	GO:0070588: calcium ion transmembrane transport	9.75E-04
61	GO:0009944: polarity specification of adaxial/abaxial axis	1.20E-03
62	GO:0009926: auxin polar transport	1.28E-03
63	GO:0019048: modulation by virus of host morphology or physiology	1.35E-03
64	GO:0009226: nucleotide-sugar biosynthetic process	1.35E-03
65	GO:0031048: chromatin silencing by small RNA	1.35E-03
66	GO:0010148: transpiration	1.35E-03
67	GO:0046739: transport of virus in multicellular host	1.35E-03
68	GO:0016556: mRNA modification	1.35E-03
69	GO:0010071: root meristem specification	1.35E-03
70	GO:0051513: regulation of monopolar cell growth	1.35E-03
71	GO:0007231: osmosensory signaling pathway	1.35E-03
72	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.72E-03
73	GO:0022622: root system development	1.81E-03
74	GO:0045723: positive regulation of fatty acid biosynthetic process	1.81E-03
75	GO:0033500: carbohydrate homeostasis	1.81E-03
76	GO:0051567: histone H3-K9 methylation	1.81E-03
77	GO:0010508: positive regulation of autophagy	1.81E-03
78	GO:0008295: spermidine biosynthetic process	1.81E-03
79	GO:0010021: amylopectin biosynthetic process	1.81E-03
80	GO:0010109: regulation of photosynthesis	1.81E-03
81	GO:0006661: phosphatidylinositol biosynthetic process	1.81E-03
82	GO:0009765: photosynthesis, light harvesting	1.81E-03
83	GO:2000306: positive regulation of photomorphogenesis	1.81E-03
84	GO:0006109: regulation of carbohydrate metabolic process	1.81E-03
85	GO:0009826: unidimensional cell growth	2.03E-03
86	GO:0016120: carotene biosynthetic process	2.31E-03
87	GO:1902183: regulation of shoot apical meristem development	2.31E-03
88	GO:0010158: abaxial cell fate specification	2.31E-03
89	GO:0010305: leaf vascular tissue pattern formation	2.36E-03
90	GO:0009646: response to absence of light	2.53E-03
91	GO:0016554: cytidine to uridine editing	2.85E-03
92	GO:0006655: phosphatidylglycerol biosynthetic process	2.85E-03
93	GO:0032973: amino acid export	2.85E-03
94	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.85E-03
95	GO:0016458: gene silencing	2.85E-03
96	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.85E-03
97	GO:0009959: negative gravitropism	2.85E-03
98	GO:0080086: stamen filament development	3.43E-03
99	GO:0009416: response to light stimulus	3.46E-03
100	GO:0048437: floral organ development	4.04E-03
101	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.04E-03
102	GO:0070370: cellular heat acclimation	4.04E-03
103	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.04E-03
104	GO:0006400: tRNA modification	4.04E-03
105	GO:0010103: stomatal complex morphogenesis	4.04E-03
106	GO:0032880: regulation of protein localization	4.04E-03
107	GO:0009395: phospholipid catabolic process	4.04E-03
108	GO:0048528: post-embryonic root development	4.04E-03
109	GO:0043090: amino acid import	4.04E-03
110	GO:0010027: thylakoid membrane organization	4.19E-03
111	GO:0042255: ribosome assembly	4.69E-03
112	GO:0006353: DNA-templated transcription, termination	4.69E-03
113	GO:0006605: protein targeting	4.69E-03
114	GO:2000070: regulation of response to water deprivation	4.69E-03
115	GO:0048564: photosystem I assembly	4.69E-03
116	GO:0015995: chlorophyll biosynthetic process	4.93E-03
117	GO:0001558: regulation of cell growth	5.37E-03
118	GO:0007186: G-protein coupled receptor signaling pathway	5.37E-03
119	GO:0010497: plasmodesmata-mediated intercellular transport	5.37E-03
120	GO:0009657: plastid organization	5.37E-03
121	GO:0010093: specification of floral organ identity	5.37E-03
122	GO:0015996: chlorophyll catabolic process	5.37E-03
123	GO:0080144: amino acid homeostasis	6.09E-03
124	GO:0048507: meristem development	6.09E-03
125	GO:2000024: regulation of leaf development	6.09E-03
126	GO:0000902: cell morphogenesis	6.09E-03
127	GO:0048527: lateral root development	6.32E-03
128	GO:0006779: porphyrin-containing compound biosynthetic process	6.83E-03
129	GO:0009299: mRNA transcription	7.61E-03
130	GO:0006782: protoporphyrinogen IX biosynthetic process	7.61E-03
131	GO:0030422: production of siRNA involved in RNA interference	7.61E-03
132	GO:0006949: syncytium formation	7.61E-03
133	GO:0005975: carbohydrate metabolic process	8.20E-03
134	GO:0006816: calcium ion transport	8.42E-03
135	GO:0009773: photosynthetic electron transport in photosystem I	8.42E-03
136	GO:0019684: photosynthesis, light reaction	8.42E-03
137	GO:0009089: lysine biosynthetic process via diaminopimelate	8.42E-03
138	GO:0043085: positive regulation of catalytic activity	8.42E-03
139	GO:0006415: translational termination	8.42E-03
140	GO:0016024: CDP-diacylglycerol biosynthetic process	9.26E-03
141	GO:0045037: protein import into chloroplast stroma	9.26E-03
142	GO:0010628: positive regulation of gene expression	1.01E-02
143	GO:0009718: anthocyanin-containing compound biosynthetic process	1.01E-02
144	GO:0009725: response to hormone	1.01E-02
145	GO:0009933: meristem structural organization	1.10E-02
146	GO:0009887: animal organ morphogenesis	1.10E-02
147	GO:0010030: positive regulation of seed germination	1.20E-02
148	GO:0009909: regulation of flower development	1.34E-02
149	GO:0007010: cytoskeleton organization	1.39E-02
150	GO:0008299: isoprenoid biosynthetic process	1.49E-02
151	GO:0016575: histone deacetylation	1.49E-02
152	GO:0007017: microtubule-based process	1.49E-02
153	GO:0051302: regulation of cell division	1.49E-02
154	GO:0006306: DNA methylation	1.59E-02
155	GO:0010431: seed maturation	1.59E-02
156	GO:0009740: gibberellic acid mediated signaling pathway	1.62E-02
157	GO:0006730: one-carbon metabolic process	1.70E-02
158	GO:0001944: vasculature development	1.81E-02
159	GO:0042127: regulation of cell proliferation	1.92E-02
160	GO:0010089: xylem development	1.92E-02
161	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.03E-02
162	GO:0008284: positive regulation of cell proliferation	2.03E-02
163	GO:0008033: tRNA processing	2.15E-02
164	GO:0042631: cellular response to water deprivation	2.15E-02
165	GO:0009958: positive gravitropism	2.26E-02
166	GO:0010154: fruit development	2.26E-02
167	GO:0006662: glycerol ether metabolic process	2.26E-02
168	GO:0010182: sugar mediated signaling pathway	2.26E-02
169	GO:0048868: pollen tube development	2.26E-02
170	GO:0006342: chromatin silencing	2.26E-02
171	GO:0006397: mRNA processing	2.33E-02
172	GO:0019252: starch biosynthetic process	2.51E-02
173	GO:0008654: phospholipid biosynthetic process	2.51E-02
174	GO:0046686: response to cadmium ion	2.52E-02
175	GO:0032502: developmental process	2.76E-02
176	GO:0009630: gravitropism	2.76E-02
177	GO:0010090: trichome morphogenesis	2.88E-02
178	GO:0045490: pectin catabolic process	2.98E-02
179	GO:0010252: auxin homeostasis	3.02E-02
180	GO:0006464: cellular protein modification process	3.02E-02
181	GO:0009451: RNA modification	3.05E-02
182	GO:0051607: defense response to virus	3.28E-02
183	GO:0007166: cell surface receptor signaling pathway	3.41E-02
184	GO:0010029: regulation of seed germination	3.56E-02
185	GO:0009816: defense response to bacterium, incompatible interaction	3.56E-02
186	GO:0009627: systemic acquired resistance	3.70E-02
187	GO:0048481: plant ovule development	4.13E-02
188	GO:0018298: protein-chromophore linkage	4.13E-02
189	GO:0006499: N-terminal protein myristoylation	4.43E-02
190	GO:0009407: toxin catabolic process	4.43E-02
191	GO:0009910: negative regulation of flower development	4.58E-02
192	GO:0045087: innate immune response	4.88E-02
193	GO:0009637: response to blue light	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0043014: alpha-tubulin binding	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
12	GO:0016987: sigma factor activity	4.76E-05
13	GO:0001053: plastid sigma factor activity	4.76E-05
14	GO:0004462: lactoylglutathione lyase activity	1.10E-04
15	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.65E-04
16	GO:0004813: alanine-tRNA ligase activity	2.65E-04
17	GO:0051996: squalene synthase activity	2.65E-04
18	GO:0008158: hedgehog receptor activity	2.65E-04
19	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.65E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.65E-04
21	GO:0005227: calcium activated cation channel activity	2.65E-04
22	GO:0008805: carbon-monoxide oxygenase activity	5.83E-04
23	GO:0019156: isoamylase activity	5.83E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.83E-04
25	GO:0008728: GTP diphosphokinase activity	5.83E-04
26	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.83E-04
27	GO:0017118: lipoyltransferase activity	5.83E-04
28	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.83E-04
29	GO:0043425: bHLH transcription factor binding	5.83E-04
30	GO:0004766: spermidine synthase activity	5.83E-04
31	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.85E-04
32	GO:0005262: calcium channel activity	7.76E-04
33	GO:0003913: DNA photolyase activity	9.47E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	9.47E-04
35	GO:0016805: dipeptidase activity	9.47E-04
36	GO:0070402: NADPH binding	9.47E-04
37	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	9.47E-04
38	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.47E-04
39	GO:0004180: carboxypeptidase activity	9.47E-04
40	GO:0048487: beta-tubulin binding	1.35E-03
41	GO:0016149: translation release factor activity, codon specific	1.35E-03
42	GO:0035197: siRNA binding	1.35E-03
43	GO:0001872: (1->3)-beta-D-glucan binding	1.35E-03
44	GO:0030570: pectate lyase activity	1.72E-03
45	GO:0019199: transmembrane receptor protein kinase activity	1.81E-03
46	GO:0042277: peptide binding	1.81E-03
47	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.81E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.31E-03
49	GO:0004556: alpha-amylase activity	2.85E-03
50	GO:0009881: photoreceptor activity	4.04E-03
51	GO:0016829: lyase activity	4.32E-03
52	GO:0043022: ribosome binding	4.69E-03
53	GO:0008312: 7S RNA binding	4.69E-03
54	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.37E-03
55	GO:0003747: translation release factor activity	6.09E-03
56	GO:0004519: endonuclease activity	6.13E-03
57	GO:0030955: potassium ion binding	6.83E-03
58	GO:0004743: pyruvate kinase activity	6.83E-03
59	GO:0003993: acid phosphatase activity	7.24E-03
60	GO:0008047: enzyme activator activity	7.61E-03
61	GO:0004161: dimethylallyltranstransferase activity	8.42E-03
62	GO:0000049: tRNA binding	9.26E-03
63	GO:0004521: endoribonuclease activity	9.26E-03
64	GO:0008083: growth factor activity	1.10E-02
65	GO:0008266: poly(U) RNA binding	1.10E-02
66	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.10E-02
67	GO:0008146: sulfotransferase activity	1.20E-02
68	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.21E-02
69	GO:0003690: double-stranded DNA binding	1.25E-02
70	GO:0005528: FK506 binding	1.39E-02
71	GO:0004857: enzyme inhibitor activity	1.39E-02
72	GO:0004407: histone deacetylase activity	1.39E-02
73	GO:0005345: purine nucleobase transmembrane transporter activity	1.49E-02
74	GO:0003723: RNA binding	1.70E-02
75	GO:0003727: single-stranded RNA binding	1.92E-02
76	GO:0047134: protein-disulfide reductase activity	2.03E-02
77	GO:0003924: GTPase activity	2.21E-02
78	GO:0008080: N-acetyltransferase activity	2.26E-02
79	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
80	GO:0016853: isomerase activity	2.38E-02
81	GO:0019901: protein kinase binding	2.51E-02
82	GO:0005525: GTP binding	2.70E-02
83	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.78E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
85	GO:0008483: transaminase activity	3.15E-02
86	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.15E-02
87	GO:0005200: structural constituent of cytoskeleton	3.15E-02
88	GO:0016597: amino acid binding	3.28E-02
89	GO:0004721: phosphoprotein phosphatase activity	3.84E-02
90	GO:0030247: polysaccharide binding	3.84E-02
91	GO:0004222: metalloendopeptidase activity	4.43E-02
92	GO:0050897: cobalt ion binding	4.58E-02
93	GO:0030145: manganese ion binding	4.58E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.29E-18
3	GO:0009570: chloroplast stroma	6.22E-09
4	GO:0080085: signal recognition particle, chloroplast targeting	3.24E-06
5	GO:0009535: chloroplast thylakoid membrane	2.21E-04
6	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.10E-04
7	GO:0010319: stromule	4.29E-04
8	GO:0030529: intracellular ribonucleoprotein complex	4.98E-04
9	GO:0031969: chloroplast membrane	6.39E-04
10	GO:0019897: extrinsic component of plasma membrane	9.47E-04
11	GO:0009528: plastid inner membrane	9.47E-04
12	GO:0005719: nuclear euchromatin	1.35E-03
13	GO:0015630: microtubule cytoskeleton	1.35E-03
14	GO:0009532: plastid stroma	1.44E-03
15	GO:0030663: COPI-coated vesicle membrane	1.81E-03
16	GO:0009527: plastid outer membrane	1.81E-03
17	GO:0009941: chloroplast envelope	1.85E-03
18	GO:0005886: plasma membrane	2.52E-03
19	GO:0015030: Cajal body	6.83E-03
20	GO:0030125: clathrin vesicle coat	7.61E-03
21	GO:0046658: anchored component of plasma membrane	8.41E-03
22	GO:0000311: plastid large ribosomal subunit	9.26E-03
23	GO:0005578: proteinaceous extracellular matrix	1.01E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.49E-02
25	GO:0042651: thylakoid membrane	1.49E-02
26	GO:0009579: thylakoid	1.68E-02
27	GO:0009543: chloroplast thylakoid lumen	2.16E-02
28	GO:0031225: anchored component of membrane	2.50E-02
29	GO:0019898: extrinsic component of membrane	2.51E-02
30	GO:0005773: vacuole	3.75E-02
31	GO:0009707: chloroplast outer membrane	4.13E-02
32	GO:0015934: large ribosomal subunit	4.58E-02