co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:2000023: regulation of lateral root development	0.00E+00
7	GO:0071000: response to magnetism	0.00E+00
8	GO:0046460: neutral lipid biosynthetic process	0.00E+00
9	GO:0000372: Group I intron splicing	0.00E+00
10	GO:0043972: histone H3-K23 acetylation	0.00E+00
11	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
12	GO:0000373: Group II intron splicing	2.72E-05
13	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.60E-04
14	GO:0034757: negative regulation of iron ion transport	3.75E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.75E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	3.75E-04
17	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.75E-04
18	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.75E-04
19	GO:0043971: histone H3-K18 acetylation	3.75E-04
20	GO:0048657: anther wall tapetum cell differentiation	3.75E-04
21	GO:0072387: flavin adenine dinucleotide metabolic process	3.75E-04
22	GO:0043087: regulation of GTPase activity	3.75E-04
23	GO:0043609: regulation of carbon utilization	3.75E-04
24	GO:0006436: tryptophanyl-tRNA aminoacylation	3.75E-04
25	GO:0000066: mitochondrial ornithine transport	3.75E-04
26	GO:0009926: auxin polar transport	3.88E-04
27	GO:0006002: fructose 6-phosphate metabolic process	5.17E-04
28	GO:0007389: pattern specification process	5.17E-04
29	GO:0010583: response to cyclopentenone	6.47E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.15E-04
31	GO:0010343: singlet oxygen-mediated programmed cell death	8.15E-04
32	GO:1901529: positive regulation of anion channel activity	8.15E-04
33	GO:0080005: photosystem stoichiometry adjustment	8.15E-04
34	GO:0010617: circadian regulation of calcium ion oscillation	8.15E-04
35	GO:0010271: regulation of chlorophyll catabolic process	8.15E-04
36	GO:0006898: receptor-mediated endocytosis	8.15E-04
37	GO:0006435: threonyl-tRNA aminoacylation	8.15E-04
38	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.15E-04
39	GO:0099402: plant organ development	8.15E-04
40	GO:0001736: establishment of planar polarity	8.15E-04
41	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.32E-03
42	GO:1902448: positive regulation of shade avoidance	1.32E-03
43	GO:0006000: fructose metabolic process	1.32E-03
44	GO:0080117: secondary growth	1.32E-03
45	GO:0006013: mannose metabolic process	1.32E-03
46	GO:1901672: positive regulation of systemic acquired resistance	1.32E-03
47	GO:0071705: nitrogen compound transport	1.32E-03
48	GO:0042780: tRNA 3'-end processing	1.32E-03
49	GO:0045493: xylan catabolic process	1.32E-03
50	GO:0010540: basipetal auxin transport	1.43E-03
51	GO:0009734: auxin-activated signaling pathway	1.58E-03
52	GO:0051639: actin filament network formation	1.91E-03
53	GO:0034059: response to anoxia	1.91E-03
54	GO:0009800: cinnamic acid biosynthetic process	1.91E-03
55	GO:0010306: rhamnogalacturonan II biosynthetic process	1.91E-03
56	GO:0010255: glucose mediated signaling pathway	1.91E-03
57	GO:1901332: negative regulation of lateral root development	1.91E-03
58	GO:2001141: regulation of RNA biosynthetic process	1.91E-03
59	GO:0009451: RNA modification	2.51E-03
60	GO:0051764: actin crosslink formation	2.56E-03
61	GO:0071249: cellular response to nitrate	2.56E-03
62	GO:0015846: polyamine transport	2.56E-03
63	GO:0006021: inositol biosynthetic process	2.56E-03
64	GO:1902347: response to strigolactone	2.56E-03
65	GO:0009956: radial pattern formation	2.56E-03
66	GO:0009793: embryo development ending in seed dormancy	3.01E-03
67	GO:0010158: abaxial cell fate specification	3.28E-03
68	GO:0006465: signal peptide processing	3.28E-03
69	GO:0010117: photoprotection	3.28E-03
70	GO:0046283: anthocyanin-containing compound metabolic process	3.28E-03
71	GO:0031365: N-terminal protein amino acid modification	3.28E-03
72	GO:0009736: cytokinin-activated signaling pathway	3.60E-03
73	GO:0060918: auxin transport	4.05E-03
74	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.05E-03
75	GO:0048831: regulation of shoot system development	4.05E-03
76	GO:1901371: regulation of leaf morphogenesis	4.05E-03
77	GO:0006559: L-phenylalanine catabolic process	4.05E-03
78	GO:0048827: phyllome development	4.05E-03
79	GO:0042549: photosystem II stabilization	4.05E-03
80	GO:0010310: regulation of hydrogen peroxide metabolic process	4.88E-03
81	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.88E-03
82	GO:0034389: lipid particle organization	4.88E-03
83	GO:0009942: longitudinal axis specification	4.88E-03
84	GO:0048509: regulation of meristem development	4.88E-03
85	GO:0010050: vegetative phase change	5.77E-03
86	GO:0019745: pentacyclic triterpenoid biosynthetic process	5.77E-03
87	GO:0051510: regulation of unidimensional cell growth	5.77E-03
88	GO:0006401: RNA catabolic process	5.77E-03
89	GO:0009610: response to symbiotic fungus	5.77E-03
90	GO:0010252: auxin homeostasis	5.88E-03
91	GO:0080167: response to karrikin	6.55E-03
92	GO:0007155: cell adhesion	6.70E-03
93	GO:0009850: auxin metabolic process	6.70E-03
94	GO:0006353: DNA-templated transcription, termination	6.70E-03
95	GO:0000105: histidine biosynthetic process	6.70E-03
96	GO:0009911: positive regulation of flower development	7.02E-03
97	GO:0009932: cell tip growth	7.69E-03
98	GO:0071482: cellular response to light stimulus	7.69E-03
99	GO:0022900: electron transport chain	7.69E-03
100	GO:0009827: plant-type cell wall modification	7.69E-03
101	GO:0010052: guard cell differentiation	7.69E-03
102	GO:0009657: plastid organization	7.69E-03
103	GO:0032544: plastid translation	7.69E-03
104	GO:0044030: regulation of DNA methylation	7.69E-03
105	GO:0009416: response to light stimulus	8.57E-03
106	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.73E-03
107	GO:0019432: triglyceride biosynthetic process	8.73E-03
108	GO:0030244: cellulose biosynthetic process	9.17E-03
109	GO:0000160: phosphorelay signal transduction system	9.64E-03
110	GO:0010311: lateral root formation	9.64E-03
111	GO:0009638: phototropism	9.82E-03
112	GO:0010380: regulation of chlorophyll biosynthetic process	9.82E-03
113	GO:0008202: steroid metabolic process	9.82E-03
114	GO:1900426: positive regulation of defense response to bacterium	9.82E-03
115	GO:0006535: cysteine biosynthetic process from serine	1.10E-02
116	GO:0048829: root cap development	1.10E-02
117	GO:0006415: translational termination	1.21E-02
118	GO:0006352: DNA-templated transcription, initiation	1.21E-02
119	GO:0009750: response to fructose	1.21E-02
120	GO:0048765: root hair cell differentiation	1.21E-02
121	GO:0006790: sulfur compound metabolic process	1.34E-02
122	GO:0015706: nitrate transport	1.34E-02
123	GO:0010582: floral meristem determinacy	1.34E-02
124	GO:0009785: blue light signaling pathway	1.46E-02
125	GO:0010229: inflorescence development	1.46E-02
126	GO:0010075: regulation of meristem growth	1.46E-02
127	GO:0010020: chloroplast fission	1.59E-02
128	GO:0009933: meristem structural organization	1.59E-02
129	GO:0009825: multidimensional cell growth	1.73E-02
130	GO:0080188: RNA-directed DNA methylation	1.73E-02
131	GO:0010167: response to nitrate	1.73E-02
132	GO:0046854: phosphatidylinositol phosphorylation	1.73E-02
133	GO:0010053: root epidermal cell differentiation	1.73E-02
134	GO:0006863: purine nucleobase transport	1.87E-02
135	GO:0009833: plant-type primary cell wall biogenesis	1.87E-02
136	GO:0006071: glycerol metabolic process	1.87E-02
137	GO:0009658: chloroplast organization	1.98E-02
138	GO:0019344: cysteine biosynthetic process	2.01E-02
139	GO:0006338: chromatin remodeling	2.01E-02
140	GO:0010187: negative regulation of seed germination	2.01E-02
141	GO:0051017: actin filament bundle assembly	2.01E-02
142	GO:0006289: nucleotide-excision repair	2.01E-02
143	GO:2000377: regulation of reactive oxygen species metabolic process	2.01E-02
144	GO:0006364: rRNA processing	2.03E-02
145	GO:0006418: tRNA aminoacylation for protein translation	2.15E-02
146	GO:0043622: cortical microtubule organization	2.15E-02
147	GO:0010073: meristem maintenance	2.15E-02
148	GO:0003333: amino acid transmembrane transport	2.30E-02
149	GO:0016226: iron-sulfur cluster assembly	2.46E-02
150	GO:0035428: hexose transmembrane transport	2.46E-02
151	GO:0019748: secondary metabolic process	2.46E-02
152	GO:0071215: cellular response to abscisic acid stimulus	2.62E-02
153	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.71E-02
154	GO:0009740: gibberellic acid mediated signaling pathway	2.73E-02
155	GO:0010584: pollen exine formation	2.78E-02
156	GO:0046777: protein autophosphorylation	2.82E-02
157	GO:0009624: response to nematode	2.90E-02
158	GO:0070417: cellular response to cold	2.94E-02
159	GO:0051726: regulation of cell cycle	3.07E-02
160	GO:0048653: anther development	3.11E-02
161	GO:0010087: phloem or xylem histogenesis	3.11E-02
162	GO:0010118: stomatal movement	3.11E-02
163	GO:0010268: brassinosteroid homeostasis	3.28E-02
164	GO:0009958: positive gravitropism	3.28E-02
165	GO:0045489: pectin biosynthetic process	3.28E-02
166	GO:0010305: leaf vascular tissue pattern formation	3.28E-02
167	GO:0048868: pollen tube development	3.28E-02
168	GO:0046323: glucose import	3.28E-02
169	GO:0009646: response to absence of light	3.45E-02
170	GO:0042752: regulation of circadian rhythm	3.45E-02
171	GO:0006508: proteolysis	3.57E-02
172	GO:0048825: cotyledon development	3.63E-02
173	GO:0009749: response to glucose	3.63E-02
174	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.81E-02
175	GO:0002229: defense response to oomycetes	3.81E-02
176	GO:0016132: brassinosteroid biosynthetic process	3.81E-02
177	GO:0007264: small GTPase mediated signal transduction	3.99E-02
178	GO:0016125: sterol metabolic process	4.36E-02
179	GO:0048364: root development	4.43E-02
180	GO:0006633: fatty acid biosynthetic process	4.54E-02
181	GO:0016126: sterol biosynthetic process	4.94E-02
182	GO:0007623: circadian rhythm	4.98E-02
183	GO:0045490: pectin catabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0008859: exoribonuclease II activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004401: histidinol-phosphatase activity	0.00E+00
9	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
10	GO:0102245: lupan-3beta,20-diol synthase activity	0.00E+00
11	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.75E-04
12	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.75E-04
13	GO:0005290: L-histidine transmembrane transporter activity	3.75E-04
14	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.75E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.75E-04
16	GO:0004830: tryptophan-tRNA ligase activity	3.75E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.75E-04
18	GO:0009672: auxin:proton symporter activity	7.31E-04
19	GO:0004047: aminomethyltransferase activity	8.15E-04
20	GO:0052832: inositol monophosphate 3-phosphatase activity	8.15E-04
21	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	8.15E-04
22	GO:0008805: carbon-monoxide oxygenase activity	8.15E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	8.15E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	8.15E-04
25	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	8.15E-04
26	GO:0000064: L-ornithine transmembrane transporter activity	8.15E-04
27	GO:0004829: threonine-tRNA ligase activity	8.15E-04
28	GO:0009884: cytokinin receptor activity	8.15E-04
29	GO:0050017: L-3-cyanoalanine synthase activity	8.15E-04
30	GO:0005094: Rho GDP-dissociation inhibitor activity	8.15E-04
31	GO:0010329: auxin efflux transmembrane transporter activity	1.27E-03
32	GO:0045548: phenylalanine ammonia-lyase activity	1.32E-03
33	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.32E-03
34	GO:0032549: ribonucleoside binding	1.32E-03
35	GO:0016805: dipeptidase activity	1.32E-03
36	GO:0005034: osmosensor activity	1.32E-03
37	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.32E-03
38	GO:0042300: beta-amyrin synthase activity	1.32E-03
39	GO:0005096: GTPase activator activity	1.40E-03
40	GO:0015189: L-lysine transmembrane transporter activity	1.91E-03
41	GO:0000254: C-4 methylsterol oxidase activity	1.91E-03
42	GO:0015181: arginine transmembrane transporter activity	1.91E-03
43	GO:0042299: lupeol synthase activity	1.91E-03
44	GO:0009882: blue light photoreceptor activity	1.91E-03
45	GO:0010011: auxin binding	2.56E-03
46	GO:0016987: sigma factor activity	2.56E-03
47	GO:0010328: auxin influx transmembrane transporter activity	2.56E-03
48	GO:0010385: double-stranded methylated DNA binding	2.56E-03
49	GO:0070628: proteasome binding	2.56E-03
50	GO:0009044: xylan 1,4-beta-xylosidase activity	2.56E-03
51	GO:0046556: alpha-L-arabinofuranosidase activity	2.56E-03
52	GO:0001053: plastid sigma factor activity	2.56E-03
53	GO:0030570: pectate lyase activity	2.86E-03
54	GO:0005471: ATP:ADP antiporter activity	3.28E-03
55	GO:0031593: polyubiquitin binding	4.05E-03
56	GO:2001070: starch binding	4.05E-03
57	GO:0019901: protein kinase binding	4.53E-03
58	GO:0004124: cysteine synthase activity	4.88E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.88E-03
60	GO:0004144: diacylglycerol O-acyltransferase activity	4.88E-03
61	GO:0019900: kinase binding	4.88E-03
62	GO:0004559: alpha-mannosidase activity	4.88E-03
63	GO:0008235: metalloexopeptidase activity	5.77E-03
64	GO:0003872: 6-phosphofructokinase activity	5.77E-03
65	GO:0019899: enzyme binding	5.77E-03
66	GO:0008237: metallopeptidase activity	6.24E-03
67	GO:0008142: oxysterol binding	7.69E-03
68	GO:0071949: FAD binding	8.73E-03
69	GO:0003678: DNA helicase activity	8.73E-03
70	GO:0003747: translation release factor activity	8.73E-03
71	GO:0004222: metalloendopeptidase activity	1.01E-02
72	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.01E-02
73	GO:0046872: metal ion binding	1.10E-02
74	GO:0015020: glucuronosyltransferase activity	1.10E-02
75	GO:0004673: protein histidine kinase activity	1.10E-02
76	GO:0008327: methyl-CpG binding	1.21E-02
77	GO:0001054: RNA polymerase I activity	1.21E-02
78	GO:0004177: aminopeptidase activity	1.21E-02
79	GO:0004519: endonuclease activity	1.34E-02
80	GO:0003723: RNA binding	1.38E-02
81	GO:0000175: 3'-5'-exoribonuclease activity	1.46E-02
82	GO:0000155: phosphorelay sensor kinase activity	1.46E-02
83	GO:0004185: serine-type carboxypeptidase activity	1.51E-02
84	GO:0042802: identical protein binding	1.54E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.59E-02
86	GO:0043621: protein self-association	1.63E-02
87	GO:0035091: phosphatidylinositol binding	1.63E-02
88	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.87E-02
89	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.87E-02
90	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.87E-02
91	GO:0004857: enzyme inhibitor activity	2.01E-02
92	GO:0043130: ubiquitin binding	2.01E-02
93	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.03E-02
94	GO:0004672: protein kinase activity	2.09E-02
95	GO:0043424: protein histidine kinase binding	2.15E-02
96	GO:0005345: purine nucleobase transmembrane transporter activity	2.15E-02
97	GO:0004540: ribonuclease activity	2.30E-02
98	GO:0004176: ATP-dependent peptidase activity	2.30E-02
99	GO:0016760: cellulose synthase (UDP-forming) activity	2.62E-02
100	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.65E-02
101	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.65E-02
102	GO:0003676: nucleic acid binding	2.92E-02
103	GO:0004812: aminoacyl-tRNA ligase activity	2.94E-02
104	GO:0004402: histone acetyltransferase activity	3.11E-02
105	GO:0008536: Ran GTPase binding	3.28E-02
106	GO:0001085: RNA polymerase II transcription factor binding	3.28E-02
107	GO:0005355: glucose transmembrane transporter activity	3.45E-02
108	GO:0010181: FMN binding	3.45E-02
109	GO:0016829: lyase activity	3.92E-02
110	GO:0004518: nuclease activity	3.99E-02
111	GO:0000156: phosphorelay response regulator activity	4.17E-02
112	GO:0051015: actin filament binding	4.17E-02
113	GO:0003924: GTPase activity	4.20E-02
114	GO:0015144: carbohydrate transmembrane transporter activity	4.33E-02
115	GO:0003684: damaged DNA binding	4.36E-02
116	GO:0016759: cellulose synthase activity	4.36E-02
117	GO:0016413: O-acetyltransferase activity	4.75E-02
118	GO:0005351: sugar:proton symporter activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009507: chloroplast	2.20E-05
4	GO:0010370: perinucleolar chromocenter	3.75E-04
5	GO:0010330: cellulose synthase complex	1.32E-03
6	GO:0016605: PML body	1.32E-03
7	GO:0032432: actin filament bundle	1.91E-03
8	GO:0005945: 6-phosphofructokinase complex	3.28E-03
9	GO:0000178: exosome (RNase complex)	3.28E-03
10	GO:0010005: cortical microtubule, transverse to long axis	4.88E-03
11	GO:0009505: plant-type cell wall	5.46E-03
12	GO:0009986: cell surface	5.77E-03
13	GO:0031982: vesicle	6.70E-03
14	GO:0030529: intracellular ribonucleoprotein complex	7.02E-03
15	GO:0005811: lipid particle	7.69E-03
16	GO:0005768: endosome	8.16E-03
17	GO:0009570: chloroplast stroma	8.46E-03
18	GO:0005736: DNA-directed RNA polymerase I complex	8.73E-03
19	GO:0005720: nuclear heterochromatin	8.73E-03
20	GO:0016604: nuclear body	9.82E-03
21	GO:0005884: actin filament	1.21E-02
22	GO:0043231: intracellular membrane-bounded organelle	1.37E-02
23	GO:0009574: preprophase band	1.46E-02
24	GO:0016602: CCAAT-binding factor complex	1.46E-02
25	GO:0005802: trans-Golgi network	1.93E-02
26	GO:0045271: respiratory chain complex I	2.15E-02
27	GO:0009532: plastid stroma	2.30E-02
28	GO:0005770: late endosome	3.28E-02
29	GO:0000932: P-body	4.94E-02