co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0009955: adaxial/abaxial pattern specification	2.78E-05
3	GO:0032544: plastid translation	6.27E-05
4	GO:0080112: seed growth	9.14E-05
5	GO:0030198: extracellular matrix organization	9.14E-05
6	GO:0000476: maturation of 4.5S rRNA	9.14E-05
7	GO:0000967: rRNA 5'-end processing	9.14E-05
8	GO:1905039: carboxylic acid transmembrane transport	9.14E-05
9	GO:1905200: gibberellic acid transmembrane transport	9.14E-05
10	GO:0000023: maltose metabolic process	9.14E-05
11	GO:0005983: starch catabolic process	1.54E-04
12	GO:0009629: response to gravity	2.16E-04
13	GO:0007154: cell communication	2.16E-04
14	GO:0042325: regulation of phosphorylation	2.16E-04
15	GO:0010270: photosystem II oxygen evolving complex assembly	2.16E-04
16	GO:0034470: ncRNA processing	2.16E-04
17	GO:0006696: ergosterol biosynthetic process	3.61E-04
18	GO:0045338: farnesyl diphosphate metabolic process	5.20E-04
19	GO:0006020: inositol metabolic process	5.20E-04
20	GO:0051085: chaperone mediated protein folding requiring cofactor	5.20E-04
21	GO:0022622: root system development	6.90E-04
22	GO:0006021: inositol biosynthetic process	6.90E-04
23	GO:0006828: manganese ion transport	1.07E-03
24	GO:0046855: inositol phosphate dephosphorylation	1.07E-03
25	GO:0010190: cytochrome b6f complex assembly	1.07E-03
26	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.07E-03
27	GO:0009959: negative gravitropism	1.07E-03
28	GO:0015995: chlorophyll biosynthetic process	1.15E-03
29	GO:0042026: protein refolding	1.27E-03
30	GO:1901259: chloroplast rRNA processing	1.27E-03
31	GO:0010196: nonphotochemical quenching	1.49E-03
32	GO:0032880: regulation of protein localization	1.49E-03
33	GO:0010161: red light signaling pathway	1.49E-03
34	GO:0006353: DNA-templated transcription, termination	1.72E-03
35	GO:0052543: callose deposition in cell wall	1.72E-03
36	GO:0010100: negative regulation of photomorphogenesis	1.96E-03
37	GO:0010099: regulation of photomorphogenesis	1.96E-03
38	GO:0006457: protein folding	1.97E-03
39	GO:0006783: heme biosynthetic process	2.21E-03
40	GO:0015979: photosynthesis	2.41E-03
41	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	2.48E-03
42	GO:0015770: sucrose transport	3.03E-03
43	GO:0006415: translational termination	3.03E-03
44	GO:0000038: very long-chain fatty acid metabolic process	3.03E-03
45	GO:0006816: calcium ion transport	3.03E-03
46	GO:0006790: sulfur compound metabolic process	3.32E-03
47	GO:2000012: regulation of auxin polar transport	3.63E-03
48	GO:0010102: lateral root morphogenesis	3.63E-03
49	GO:0006541: glutamine metabolic process	3.93E-03
50	GO:0010207: photosystem II assembly	3.93E-03
51	GO:0009901: anther dehiscence	4.26E-03
52	GO:0046854: phosphatidylinositol phosphorylation	4.26E-03
53	GO:0000162: tryptophan biosynthetic process	4.58E-03
54	GO:0009733: response to auxin	4.63E-03
55	GO:0010187: negative regulation of seed germination	4.92E-03
56	GO:0009768: photosynthesis, light harvesting in photosystem I	5.27E-03
57	GO:0016226: iron-sulfur cluster assembly	5.98E-03
58	GO:0007005: mitochondrion organization	5.98E-03
59	GO:0019748: secondary metabolic process	5.98E-03
60	GO:0006633: fatty acid biosynthetic process	6.10E-03
61	GO:0009686: gibberellin biosynthetic process	6.35E-03
62	GO:0008284: positive regulation of cell proliferation	7.11E-03
63	GO:0016117: carotenoid biosynthetic process	7.11E-03
64	GO:0042335: cuticle development	7.51E-03
65	GO:0009958: positive gravitropism	7.91E-03
66	GO:0019252: starch biosynthetic process	8.74E-03
67	GO:1901657: glycosyl compound metabolic process	1.00E-02
68	GO:0010027: thylakoid membrane organization	1.19E-02
69	GO:0016126: sterol biosynthetic process	1.19E-02
70	GO:0010029: regulation of seed germination	1.23E-02
71	GO:0009607: response to biotic stimulus	1.23E-02
72	GO:0009627: systemic acquired resistance	1.28E-02
73	GO:0008219: cell death	1.43E-02
74	GO:0000160: phosphorelay signal transduction system	1.48E-02
75	GO:0048527: lateral root development	1.59E-02
76	GO:0016042: lipid catabolic process	1.85E-02
77	GO:0008283: cell proliferation	2.03E-02
78	GO:0008152: metabolic process	2.10E-02
79	GO:0015031: protein transport	2.28E-02
80	GO:0009409: response to cold	2.47E-02
81	GO:0009736: cytokinin-activated signaling pathway	2.51E-02
82	GO:0009734: auxin-activated signaling pathway	2.69E-02
83	GO:0005975: carbohydrate metabolic process	2.85E-02
84	GO:0048367: shoot system development	2.89E-02
85	GO:0046686: response to cadmium ion	2.94E-02
86	GO:0009740: gibberellic acid mediated signaling pathway	3.09E-02
87	GO:0009735: response to cytokinin	3.09E-02
88	GO:0009624: response to nematode	3.22E-02
89	GO:0006396: RNA processing	3.29E-02
90	GO:0009742: brassinosteroid mediated signaling pathway	3.36E-02
91	GO:0009555: pollen development	3.38E-02
92	GO:0009416: response to light stimulus	3.38E-02
93	GO:0040008: regulation of growth	4.60E-02
94	GO:0007623: circadian rhythm	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0090711: FMN hydrolase activity	0.00E+00
7	GO:0010313: phytochrome binding	9.14E-05
8	GO:1905201: gibberellin transmembrane transporter activity	9.14E-05
9	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.16E-04
10	GO:0008934: inositol monophosphate 1-phosphatase activity	2.16E-04
11	GO:0052833: inositol monophosphate 4-phosphatase activity	2.16E-04
12	GO:0016630: protochlorophyllide reductase activity	2.16E-04
13	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.16E-04
14	GO:0052832: inositol monophosphate 3-phosphatase activity	2.16E-04
15	GO:0004049: anthranilate synthase activity	3.61E-04
16	GO:0016149: translation release factor activity, codon specific	5.20E-04
17	GO:0003959: NADPH dehydrogenase activity	8.73E-04
18	GO:0004556: alpha-amylase activity	1.07E-03
19	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.27E-03
20	GO:0004525: ribonuclease III activity	1.72E-03
21	GO:0003747: translation release factor activity	2.21E-03
22	GO:0005384: manganese ion transmembrane transporter activity	2.48E-03
23	GO:0016298: lipase activity	2.84E-03
24	GO:0008515: sucrose transmembrane transporter activity	3.03E-03
25	GO:0008559: xenobiotic-transporting ATPase activity	3.03E-03
26	GO:0044183: protein binding involved in protein folding	3.03E-03
27	GO:0003725: double-stranded RNA binding	3.63E-03
28	GO:0015095: magnesium ion transmembrane transporter activity	3.63E-03
29	GO:0031072: heat shock protein binding	3.63E-03
30	GO:0019888: protein phosphatase regulator activity	3.63E-03
31	GO:0051082: unfolded protein binding	3.89E-03
32	GO:0008083: growth factor activity	3.93E-03
33	GO:0004535: poly(A)-specific ribonuclease activity	3.93E-03
34	GO:0051119: sugar transmembrane transporter activity	4.26E-03
35	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.58E-03
36	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.58E-03
37	GO:0031409: pigment binding	4.58E-03
38	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.58E-03
39	GO:0051536: iron-sulfur cluster binding	4.92E-03
40	GO:0003713: transcription coactivator activity	7.91E-03
41	GO:0042802: identical protein binding	8.51E-03
42	GO:0000156: phosphorelay response regulator activity	1.00E-02
43	GO:0016168: chlorophyll binding	1.23E-02
44	GO:0102483: scopolin beta-glucosidase activity	1.33E-02
45	GO:0003993: acid phosphatase activity	1.75E-02
46	GO:0008422: beta-glucosidase activity	1.80E-02
47	GO:0004185: serine-type carboxypeptidase activity	2.03E-02
48	GO:0043621: protein self-association	2.14E-02
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.89E-02
51	GO:0003723: RNA binding	3.03E-02
52	GO:0019843: rRNA binding	3.78E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.85E-02
54	GO:0004252: serine-type endopeptidase activity	4.07E-02
55	GO:0016787: hydrolase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.63E-16
3	GO:0009535: chloroplast thylakoid membrane	3.70E-09
4	GO:0009570: chloroplast stroma	1.17E-06
5	GO:0009534: chloroplast thylakoid	4.65E-06
6	GO:0031969: chloroplast membrane	3.07E-04
7	GO:0009941: chloroplast envelope	1.16E-03
8	GO:0009579: thylakoid	1.75E-03
9	GO:0031977: thylakoid lumen	1.89E-03
10	GO:0005763: mitochondrial small ribosomal subunit	2.21E-03
11	GO:0000159: protein phosphatase type 2A complex	3.03E-03
12	GO:0030076: light-harvesting complex	4.26E-03
13	GO:0010287: plastoglobule	4.61E-03
14	GO:0009543: chloroplast thylakoid lumen	4.86E-03
15	GO:0042651: thylakoid membrane	5.27E-03
16	GO:0009654: photosystem II oxygen evolving complex	5.27E-03
17	GO:0015935: small ribosomal subunit	5.62E-03
18	GO:0019898: extrinsic component of membrane	8.74E-03
19	GO:0046658: anchored component of plasma membrane	8.87E-03
20	GO:0010319: stromule	1.09E-02
21	GO:0000325: plant-type vacuole	1.59E-02
22	GO:0009706: chloroplast inner membrane	3.22E-02