GO Enrichment Analysis of Co-expressed Genes with
AT3G05650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035266: meristem growth | 2.30E-05 |
| 2 | GO:0007292: female gamete generation | 2.30E-05 |
| 3 | GO:0043687: post-translational protein modification | 2.30E-05 |
| 4 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.66E-05 |
| 5 | GO:0035335: peptidyl-tyrosine dephosphorylation | 5.89E-05 |
| 6 | GO:0051788: response to misfolded protein | 5.89E-05 |
| 7 | GO:0060968: regulation of gene silencing | 1.04E-04 |
| 8 | GO:0051782: negative regulation of cell division | 1.55E-04 |
| 9 | GO:0072334: UDP-galactose transmembrane transport | 1.55E-04 |
| 10 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 1.55E-04 |
| 11 | GO:0033320: UDP-D-xylose biosynthetic process | 2.12E-04 |
| 12 | GO:0033356: UDP-L-arabinose metabolic process | 2.12E-04 |
| 13 | GO:0018279: protein N-linked glycosylation via asparagine | 2.73E-04 |
| 14 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.37E-04 |
| 15 | GO:0048827: phyllome development | 3.37E-04 |
| 16 | GO:0048232: male gamete generation | 3.37E-04 |
| 17 | GO:0043248: proteasome assembly | 3.37E-04 |
| 18 | GO:0042732: D-xylose metabolic process | 3.37E-04 |
| 19 | GO:0042176: regulation of protein catabolic process | 3.37E-04 |
| 20 | GO:0009612: response to mechanical stimulus | 4.04E-04 |
| 21 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 4.04E-04 |
| 22 | GO:0006744: ubiquinone biosynthetic process | 4.74E-04 |
| 23 | GO:0000338: protein deneddylation | 4.74E-04 |
| 24 | GO:0010078: maintenance of root meristem identity | 5.46E-04 |
| 25 | GO:0010100: negative regulation of photomorphogenesis | 6.21E-04 |
| 26 | GO:0030968: endoplasmic reticulum unfolded protein response | 6.21E-04 |
| 27 | GO:0000902: cell morphogenesis | 6.98E-04 |
| 28 | GO:0015780: nucleotide-sugar transport | 6.98E-04 |
| 29 | GO:0043067: regulation of programmed cell death | 7.77E-04 |
| 30 | GO:0048829: root cap development | 8.59E-04 |
| 31 | GO:0072593: reactive oxygen species metabolic process | 9.42E-04 |
| 32 | GO:0010015: root morphogenesis | 9.42E-04 |
| 33 | GO:0009790: embryo development | 9.96E-04 |
| 34 | GO:0000266: mitochondrial fission | 1.03E-03 |
| 35 | GO:0009933: meristem structural organization | 1.20E-03 |
| 36 | GO:0090351: seedling development | 1.30E-03 |
| 37 | GO:0009225: nucleotide-sugar metabolic process | 1.30E-03 |
| 38 | GO:0042023: DNA endoreduplication | 1.39E-03 |
| 39 | GO:0034976: response to endoplasmic reticulum stress | 1.39E-03 |
| 40 | GO:0000027: ribosomal large subunit assembly | 1.49E-03 |
| 41 | GO:0008299: isoprenoid biosynthetic process | 1.59E-03 |
| 42 | GO:0016192: vesicle-mediated transport | 2.30E-03 |
| 43 | GO:0000302: response to reactive oxygen species | 2.72E-03 |
| 44 | GO:0030163: protein catabolic process | 2.96E-03 |
| 45 | GO:0046686: response to cadmium ion | 3.04E-03 |
| 46 | GO:0019760: glucosinolate metabolic process | 3.09E-03 |
| 47 | GO:0009408: response to heat | 3.21E-03 |
| 48 | GO:0030244: cellulose biosynthetic process | 4.17E-03 |
| 49 | GO:0009832: plant-type cell wall biogenesis | 4.32E-03 |
| 50 | GO:0010311: lateral root formation | 4.32E-03 |
| 51 | GO:0006499: N-terminal protein myristoylation | 4.46E-03 |
| 52 | GO:0010043: response to zinc ion | 4.60E-03 |
| 53 | GO:0045087: innate immune response | 4.90E-03 |
| 54 | GO:0034599: cellular response to oxidative stress | 5.05E-03 |
| 55 | GO:0009735: response to cytokinin | 5.19E-03 |
| 56 | GO:0009926: auxin polar transport | 5.84E-03 |
| 57 | GO:0009640: photomorphogenesis | 5.84E-03 |
| 58 | GO:0000209: protein polyubiquitination | 6.00E-03 |
| 59 | GO:0008643: carbohydrate transport | 6.16E-03 |
| 60 | GO:0051301: cell division | 6.18E-03 |
| 61 | GO:0009965: leaf morphogenesis | 6.33E-03 |
| 62 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 6.66E-03 |
| 63 | GO:0009846: pollen germination | 6.83E-03 |
| 64 | GO:0006486: protein glycosylation | 7.18E-03 |
| 65 | GO:0009585: red, far-red light phototransduction | 7.18E-03 |
| 66 | GO:0006457: protein folding | 7.34E-03 |
| 67 | GO:0006511: ubiquitin-dependent protein catabolic process | 7.70E-03 |
| 68 | GO:0048367: shoot system development | 8.24E-03 |
| 69 | GO:0048316: seed development | 8.24E-03 |
| 70 | GO:0009553: embryo sac development | 8.98E-03 |
| 71 | GO:0009058: biosynthetic process | 1.11E-02 |
| 72 | GO:0042744: hydrogen peroxide catabolic process | 1.18E-02 |
| 73 | GO:0006413: translational initiation | 1.28E-02 |
| 74 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.46E-02 |
| 75 | GO:0009617: response to bacterium | 1.53E-02 |
| 76 | GO:0009860: pollen tube growth | 1.94E-02 |
| 77 | GO:0007049: cell cycle | 1.99E-02 |
| 78 | GO:0045454: cell redox homeostasis | 2.43E-02 |
| 79 | GO:0006886: intracellular protein transport | 2.49E-02 |
| 80 | GO:0016042: lipid catabolic process | 2.77E-02 |
| 81 | GO:0048364: root development | 2.91E-02 |
| 82 | GO:0050832: defense response to fungus | 3.42E-02 |
| 83 | GO:0006508: proteolysis | 3.54E-02 |
| 84 | GO:0009651: response to salt stress | 3.86E-02 |
| 85 | GO:0009555: pollen development | 4.25E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990381: ubiquitin-specific protease binding | 2.30E-05 |
| 2 | GO:0019784: NEDD8-specific protease activity | 2.30E-05 |
| 3 | GO:0004190: aspartic-type endopeptidase activity | 3.12E-05 |
| 4 | GO:0050347: trans-octaprenyltranstransferase activity | 5.89E-05 |
| 5 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 5.89E-05 |
| 6 | GO:0000030: mannosyltransferase activity | 1.04E-04 |
| 7 | GO:0004576: oligosaccharyl transferase activity | 2.12E-04 |
| 8 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 2.12E-04 |
| 9 | GO:0004659: prenyltransferase activity | 2.12E-04 |
| 10 | GO:0005459: UDP-galactose transmembrane transporter activity | 2.73E-04 |
| 11 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 2.73E-04 |
| 12 | GO:0031593: polyubiquitin binding | 3.37E-04 |
| 13 | GO:0016688: L-ascorbate peroxidase activity | 3.37E-04 |
| 14 | GO:0036402: proteasome-activating ATPase activity | 3.37E-04 |
| 15 | GO:0048040: UDP-glucuronate decarboxylase activity | 3.37E-04 |
| 16 | GO:0004130: cytochrome-c peroxidase activity | 3.37E-04 |
| 17 | GO:0070403: NAD+ binding | 4.04E-04 |
| 18 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 4.74E-04 |
| 19 | GO:0030234: enzyme regulator activity | 8.59E-04 |
| 20 | GO:0004161: dimethylallyltranstransferase activity | 9.42E-04 |
| 21 | GO:0017025: TBP-class protein binding | 1.30E-03 |
| 22 | GO:0004725: protein tyrosine phosphatase activity | 1.39E-03 |
| 23 | GO:0043130: ubiquitin binding | 1.49E-03 |
| 24 | GO:0003756: protein disulfide isomerase activity | 2.02E-03 |
| 25 | GO:0016887: ATPase activity | 4.95E-03 |
| 26 | GO:0045735: nutrient reservoir activity | 8.06E-03 |
| 27 | GO:0022857: transmembrane transporter activity | 8.79E-03 |
| 28 | GO:0051082: unfolded protein binding | 9.17E-03 |
| 29 | GO:0015297: antiporter activity | 1.30E-02 |
| 30 | GO:0008017: microtubule binding | 1.39E-02 |
| 31 | GO:0003743: translation initiation factor activity | 1.50E-02 |
| 32 | GO:0046982: protein heterodimerization activity | 1.81E-02 |
| 33 | GO:0004601: peroxidase activity | 1.84E-02 |
| 34 | GO:0016787: hydrolase activity | 2.47E-02 |
| 35 | GO:0004722: protein serine/threonine phosphatase activity | 2.60E-02 |
| 36 | GO:0003924: GTPase activity | 2.83E-02 |
| 37 | GO:0000166: nucleotide binding | 4.25E-02 |
| 38 | GO:0016740: transferase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0000502: proteasome complex | 2.05E-05 |
| 3 | GO:0000836: Hrd1p ubiquitin ligase complex | 2.30E-05 |
| 4 | GO:0044322: endoplasmic reticulum quality control compartment | 2.30E-05 |
| 5 | GO:0036513: Derlin-1 retrotranslocation complex | 1.55E-04 |
| 6 | GO:0005788: endoplasmic reticulum lumen | 1.81E-04 |
| 7 | GO:0030660: Golgi-associated vesicle membrane | 2.12E-04 |
| 8 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 2.12E-04 |
| 9 | GO:0008250: oligosaccharyltransferase complex | 2.73E-04 |
| 10 | GO:0031597: cytosolic proteasome complex | 4.04E-04 |
| 11 | GO:0031595: nuclear proteasome complex | 4.74E-04 |
| 12 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 5.46E-04 |
| 13 | GO:0030131: clathrin adaptor complex | 5.46E-04 |
| 14 | GO:0000326: protein storage vacuole | 6.21E-04 |
| 15 | GO:0008180: COP9 signalosome | 6.98E-04 |
| 16 | GO:0030665: clathrin-coated vesicle membrane | 7.77E-04 |
| 17 | GO:0008540: proteasome regulatory particle, base subcomplex | 7.77E-04 |
| 18 | GO:0030125: clathrin vesicle coat | 8.59E-04 |
| 19 | GO:0005765: lysosomal membrane | 9.42E-04 |
| 20 | GO:0008541: proteasome regulatory particle, lid subcomplex | 9.42E-04 |
| 21 | GO:0005783: endoplasmic reticulum | 1.05E-03 |
| 22 | GO:0043234: protein complex | 1.39E-03 |
| 23 | GO:0016592: mediator complex | 2.84E-03 |
| 24 | GO:0005667: transcription factor complex | 3.75E-03 |
| 25 | GO:0016020: membrane | 3.98E-03 |
| 26 | GO:0005886: plasma membrane | 4.25E-03 |
| 27 | GO:0005829: cytosol | 4.93E-03 |
| 28 | GO:0005774: vacuolar membrane | 8.36E-03 |
| 29 | GO:0009524: phragmoplast | 1.11E-02 |
| 30 | GO:0009506: plasmodesma | 1.25E-02 |
| 31 | GO:0005773: vacuole | 1.44E-02 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 1.76E-02 |
| 33 | GO:0005730: nucleolus | 1.95E-02 |
| 34 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.96E-02 |
| 35 | GO:0005794: Golgi apparatus | 1.97E-02 |
| 36 | GO:0005874: microtubule | 2.09E-02 |
| 37 | GO:0009579: thylakoid | 4.83E-02 |