Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G05625

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0042352: GDP-L-fucose salvage0.00E+00
3GO:0061157: mRNA destabilization0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
6GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0009734: auxin-activated signaling pathway9.72E-08
14GO:0046620: regulation of organ growth8.15E-07
15GO:0009733: response to auxin1.06E-06
16GO:1900865: chloroplast RNA modification3.24E-06
17GO:0040008: regulation of growth7.55E-06
18GO:2000012: regulation of auxin polar transport2.35E-04
19GO:0048497: maintenance of floral organ identity2.73E-04
20GO:0010020: chloroplast fission2.78E-04
21GO:0010027: thylakoid membrane organization3.33E-04
22GO:0016554: cytidine to uridine editing3.83E-04
23GO:0042793: transcription from plastid promoter3.83E-04
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.02E-04
25GO:0009793: embryo development ending in seed dormancy5.01E-04
26GO:0042372: phylloquinone biosynthetic process5.09E-04
27GO:0043007: maintenance of rDNA5.87E-04
28GO:1902458: positive regulation of stomatal opening5.87E-04
29GO:0015904: tetracycline transport5.87E-04
30GO:0042659: regulation of cell fate specification5.87E-04
31GO:0070509: calcium ion import5.87E-04
32GO:0005980: glycogen catabolic process5.87E-04
33GO:0030198: extracellular matrix organization5.87E-04
34GO:0006438: valyl-tRNA aminoacylation5.87E-04
35GO:0090558: plant epidermis development5.87E-04
36GO:0046520: sphingoid biosynthetic process5.87E-04
37GO:0010063: positive regulation of trichoblast fate specification5.87E-04
38GO:0010480: microsporocyte differentiation5.87E-04
39GO:0042759: long-chain fatty acid biosynthetic process5.87E-04
40GO:0042371: vitamin K biosynthetic process5.87E-04
41GO:0043686: co-translational protein modification5.87E-04
42GO:0035987: endodermal cell differentiation5.87E-04
43GO:0048437: floral organ development6.51E-04
44GO:0010098: suspensor development6.51E-04
45GO:2000070: regulation of response to water deprivation8.10E-04
46GO:0016042: lipid catabolic process8.41E-04
47GO:0009658: chloroplast organization9.24E-04
48GO:0010305: leaf vascular tissue pattern formation1.05E-03
49GO:0009640: photomorphogenesis1.08E-03
50GO:0009926: auxin polar transport1.08E-03
51GO:1903426: regulation of reactive oxygen species biosynthetic process1.26E-03
52GO:0006568: tryptophan metabolic process1.26E-03
53GO:2000123: positive regulation of stomatal complex development1.26E-03
54GO:0019388: galactose catabolic process1.26E-03
55GO:1900871: chloroplast mRNA modification1.26E-03
56GO:0006432: phenylalanyl-tRNA aminoacylation1.26E-03
57GO:0018026: peptidyl-lysine monomethylation1.26E-03
58GO:0071497: cellular response to freezing1.26E-03
59GO:0080009: mRNA methylation1.26E-03
60GO:0009786: regulation of asymmetric cell division1.26E-03
61GO:0031648: protein destabilization1.26E-03
62GO:0009638: phototropism1.39E-03
63GO:0010583: response to cyclopentenone1.49E-03
64GO:0048829: root cap development1.62E-03
65GO:0033591: response to L-ascorbic acid2.07E-03
66GO:0090708: specification of plant organ axis polarity2.07E-03
67GO:1902448: positive regulation of shade avoidance2.07E-03
68GO:0007166: cell surface receptor signaling pathway2.08E-03
69GO:0010588: cotyledon vascular tissue pattern formation2.45E-03
70GO:0010102: lateral root morphogenesis2.45E-03
71GO:0010071: root meristem specification3.01E-03
72GO:0007231: osmosensory signaling pathway3.01E-03
73GO:0009102: biotin biosynthetic process3.01E-03
74GO:0009647: skotomorphogenesis3.01E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.01E-03
76GO:0046739: transport of virus in multicellular host3.01E-03
77GO:0009590: detection of gravity3.01E-03
78GO:0016556: mRNA modification3.01E-03
79GO:0043572: plastid fission3.01E-03
80GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis3.01E-03
81GO:0070588: calcium ion transmembrane transport3.11E-03
82GO:0009416: response to light stimulus3.16E-03
83GO:0009742: brassinosteroid mediated signaling pathway3.21E-03
84GO:0042274: ribosomal small subunit biogenesis4.06E-03
85GO:0009765: photosynthesis, light harvesting4.06E-03
86GO:0030104: water homeostasis4.06E-03
87GO:0033500: carbohydrate homeostasis4.06E-03
88GO:0022622: root system development4.06E-03
89GO:2000038: regulation of stomatal complex development4.06E-03
90GO:0009755: hormone-mediated signaling pathway4.06E-03
91GO:0006808: regulation of nitrogen utilization4.06E-03
92GO:1901141: regulation of lignin biosynthetic process4.06E-03
93GO:0016123: xanthophyll biosynthetic process5.21E-03
94GO:0010438: cellular response to sulfur starvation5.21E-03
95GO:0010375: stomatal complex patterning5.21E-03
96GO:0016131: brassinosteroid metabolic process5.21E-03
97GO:0016120: carotene biosynthetic process5.21E-03
98GO:0010236: plastoquinone biosynthetic process5.21E-03
99GO:0045038: protein import into chloroplast thylakoid membrane5.21E-03
100GO:0031365: N-terminal protein amino acid modification5.21E-03
101GO:0006631: fatty acid metabolic process5.24E-03
102GO:0009790: embryo development5.26E-03
103GO:0009959: negative gravitropism6.46E-03
104GO:0009913: epidermal cell differentiation6.46E-03
105GO:1902456: regulation of stomatal opening6.46E-03
106GO:0048831: regulation of shoot system development6.46E-03
107GO:0018258: protein O-linked glycosylation via hydroxyproline6.46E-03
108GO:0010405: arabinogalactan protein metabolic process6.46E-03
109GO:0080022: primary root development7.14E-03
110GO:0006662: glycerol ether metabolic process7.71E-03
111GO:0010182: sugar mediated signaling pathway7.71E-03
112GO:0080086: stamen filament development7.81E-03
113GO:2000067: regulation of root morphogenesis7.81E-03
114GO:0017148: negative regulation of translation7.81E-03
115GO:2000033: regulation of seed dormancy process7.81E-03
116GO:0031930: mitochondria-nucleus signaling pathway7.81E-03
117GO:0030488: tRNA methylation7.81E-03
118GO:0010161: red light signaling pathway9.25E-03
119GO:0048528: post-embryonic root development9.25E-03
120GO:0009772: photosynthetic electron transport in photosystem II9.25E-03
121GO:0030497: fatty acid elongation9.25E-03
122GO:0010444: guard mother cell differentiation9.25E-03
123GO:0030307: positive regulation of cell growth9.25E-03
124GO:0015693: magnesium ion transport9.25E-03
125GO:0032880: regulation of protein localization9.25E-03
126GO:0010439: regulation of glucosinolate biosynthetic process1.08E-02
127GO:0005978: glycogen biosynthetic process1.08E-02
128GO:0009819: drought recovery1.08E-02
129GO:0009704: de-etiolation1.08E-02
130GO:0055075: potassium ion homeostasis1.08E-02
131GO:0000105: histidine biosynthetic process1.08E-02
132GO:1901657: glycosyl compound metabolic process1.09E-02
133GO:0006468: protein phosphorylation1.22E-02
134GO:0010099: regulation of photomorphogenesis1.24E-02
135GO:0015996: chlorophyll catabolic process1.24E-02
136GO:0007186: G-protein coupled receptor signaling pathway1.24E-02
137GO:0009740: gibberellic acid mediated signaling pathway1.24E-02
138GO:0010497: plasmodesmata-mediated intercellular transport1.24E-02
139GO:0010100: negative regulation of photomorphogenesis1.24E-02
140GO:0051865: protein autoubiquitination1.41E-02
141GO:0046916: cellular transition metal ion homeostasis1.41E-02
142GO:0048507: meristem development1.41E-02
143GO:0006783: heme biosynthetic process1.41E-02
144GO:0000902: cell morphogenesis1.41E-02
145GO:0006508: proteolysis1.53E-02
146GO:2000280: regulation of root development1.59E-02
147GO:0031425: chloroplast RNA processing1.59E-02
148GO:0015995: chlorophyll biosynthetic process1.64E-02
149GO:0010162: seed dormancy process1.77E-02
150GO:0009299: mRNA transcription1.77E-02
151GO:0009641: shade avoidance1.77E-02
152GO:0000160: phosphorelay signal transduction system1.91E-02
153GO:0009813: flavonoid biosynthetic process1.91E-02
154GO:0006816: calcium ion transport1.96E-02
155GO:0009773: photosynthetic electron transport in photosystem I1.96E-02
156GO:0009073: aromatic amino acid family biosynthetic process1.96E-02
157GO:0043085: positive regulation of catalytic activity1.96E-02
158GO:0009682: induced systemic resistance1.96E-02
159GO:0000272: polysaccharide catabolic process1.96E-02
160GO:0048229: gametophyte development1.96E-02
161GO:0006351: transcription, DNA-templated1.98E-02
162GO:0012501: programmed cell death2.16E-02
163GO:0006820: anion transport2.16E-02
164GO:0010105: negative regulation of ethylene-activated signaling pathway2.16E-02
165GO:0045037: protein import into chloroplast stroma2.16E-02
166GO:0006865: amino acid transport2.20E-02
167GO:0010075: regulation of meristem growth2.37E-02
168GO:0009725: response to hormone2.37E-02
169GO:0009767: photosynthetic electron transport chain2.37E-02
170GO:0010628: positive regulation of gene expression2.37E-02
171GO:0009785: blue light signaling pathway2.37E-02
172GO:0006006: glucose metabolic process2.37E-02
173GO:0050826: response to freezing2.37E-02
174GO:0045454: cell redox homeostasis2.39E-02
175GO:0034599: cellular response to oxidative stress2.41E-02
176GO:0009266: response to temperature stimulus2.58E-02
177GO:0009934: regulation of meristem structural organization2.58E-02
178GO:0010207: photosystem II assembly2.58E-02
179GO:0007275: multicellular organism development2.58E-02
180GO:0030001: metal ion transport2.63E-02
181GO:0009451: RNA modification2.76E-02
182GO:0080188: RNA-directed DNA methylation2.80E-02
183GO:0090351: seedling development2.80E-02
184GO:0010030: positive regulation of seed germination2.80E-02
185GO:0006071: glycerol metabolic process3.03E-02
186GO:0006833: water transport3.03E-02
187GO:0000162: tryptophan biosynthetic process3.03E-02
188GO:0010025: wax biosynthetic process3.03E-02
189GO:0051017: actin filament bundle assembly3.26E-02
190GO:0010187: negative regulation of seed germination3.26E-02
191GO:0005975: carbohydrate metabolic process3.41E-02
192GO:0051302: regulation of cell division3.50E-02
193GO:0006418: tRNA aminoacylation for protein translation3.50E-02
194GO:0048511: rhythmic process3.74E-02
195GO:0048278: vesicle docking3.74E-02
196GO:0003333: amino acid transmembrane transport3.74E-02
197GO:2000022: regulation of jasmonic acid mediated signaling pathway3.99E-02
198GO:0009736: cytokinin-activated signaling pathway4.00E-02
199GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.25E-02
200GO:0010082: regulation of root meristem growth4.25E-02
201GO:0009686: gibberellin biosynthetic process4.25E-02
202GO:0009294: DNA mediated transformation4.25E-02
203GO:0009625: response to insect4.25E-02
204GO:0009826: unidimensional cell growth4.39E-02
205GO:0010091: trichome branching4.51E-02
206GO:0042127: regulation of cell proliferation4.51E-02
207GO:0016117: carotenoid biosynthetic process4.77E-02
208GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.77E-02
209GO:0008284: positive regulation of cell proliferation4.77E-02
210GO:0048367: shoot system development4.87E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
3GO:0005201: extracellular matrix structural constituent0.00E+00
4GO:0047341: fucose-1-phosphate guanylyltransferase activity0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0050201: fucokinase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0047661: amino-acid racemase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0015267: channel activity0.00E+00
13GO:0008237: metallopeptidase activity2.58E-05
14GO:0004176: ATP-dependent peptidase activity4.72E-05
15GO:0000170: sphingosine hydroxylase activity5.87E-04
16GO:0050139: nicotinate-N-glucosyltransferase activity5.87E-04
17GO:0047259: glucomannan 4-beta-mannosyltransferase activity5.87E-04
18GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.87E-04
19GO:0004425: indole-3-glycerol-phosphate synthase activity5.87E-04
20GO:0008184: glycogen phosphorylase activity5.87E-04
21GO:0004645: phosphorylase activity5.87E-04
22GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.87E-04
23GO:0009374: biotin binding5.87E-04
24GO:0042586: peptide deformylase activity5.87E-04
25GO:0010313: phytochrome binding5.87E-04
26GO:0004832: valine-tRNA ligase activity5.87E-04
27GO:0004519: endonuclease activity1.08E-03
28GO:0043425: bHLH transcription factor binding1.26E-03
29GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.26E-03
30GO:0016630: protochlorophyllide reductase activity1.26E-03
31GO:0008805: carbon-monoxide oxygenase activity1.26E-03
32GO:0042284: sphingolipid delta-4 desaturase activity1.26E-03
33GO:0004614: phosphoglucomutase activity1.26E-03
34GO:0008493: tetracycline transporter activity1.26E-03
35GO:0004826: phenylalanine-tRNA ligase activity1.26E-03
36GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.26E-03
37GO:0017118: lipoyltransferase activity1.26E-03
38GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.45E-03
39GO:0052689: carboxylic ester hydrolase activity1.73E-03
40GO:0004180: carboxypeptidase activity2.07E-03
41GO:0070330: aromatase activity2.07E-03
42GO:0005504: fatty acid binding2.07E-03
43GO:0017150: tRNA dihydrouridine synthase activity2.07E-03
44GO:0003913: DNA photolyase activity2.07E-03
45GO:0016805: dipeptidase activity2.07E-03
46GO:0005262: calcium channel activity2.45E-03
47GO:0031072: heat shock protein binding2.45E-03
48GO:0001872: (1->3)-beta-D-glucan binding3.01E-03
49GO:0043023: ribosomal large subunit binding3.01E-03
50GO:0015035: protein disulfide oxidoreductase activity3.07E-03
51GO:0016788: hydrolase activity, acting on ester bonds3.68E-03
52GO:0005528: FK506 binding3.85E-03
53GO:0045430: chalcone isomerase activity4.06E-03
54GO:0019199: transmembrane receptor protein kinase activity4.06E-03
55GO:0004335: galactokinase activity4.06E-03
56GO:0004659: prenyltransferase activity4.06E-03
57GO:0016279: protein-lysine N-methyltransferase activity4.06E-03
58GO:0003989: acetyl-CoA carboxylase activity5.21E-03
59GO:0018685: alkane 1-monooxygenase activity5.21E-03
60GO:0003727: single-stranded RNA binding6.09E-03
61GO:0003723: RNA binding6.34E-03
62GO:0043621: protein self-association6.43E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity6.46E-03
64GO:0016208: AMP binding6.46E-03
65GO:0102229: amylopectin maltohydrolase activity6.46E-03
66GO:0047134: protein-disulfide reductase activity6.60E-03
67GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.81E-03
68GO:0051753: mannan synthase activity7.81E-03
69GO:0016832: aldehyde-lyase activity7.81E-03
70GO:0016161: beta-amylase activity7.81E-03
71GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.81E-03
72GO:0004791: thioredoxin-disulfide reductase activity8.29E-03
73GO:0016298: lipase activity8.91E-03
74GO:0000156: phosphorelay response regulator activity1.09E-02
75GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.09E-02
76GO:0051015: actin filament binding1.09E-02
77GO:0046914: transition metal ion binding1.24E-02
78GO:0008173: RNA methyltransferase activity1.24E-02
79GO:0008889: glycerophosphodiester phosphodiesterase activity1.41E-02
80GO:0102483: scopolin beta-glucosidase activity1.64E-02
81GO:0008047: enzyme activator activity1.77E-02
82GO:0004222: metalloendopeptidase activity2.00E-02
83GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.10E-02
84GO:0000049: tRNA binding2.16E-02
85GO:0003697: single-stranded DNA binding2.31E-02
86GO:0003725: double-stranded RNA binding2.37E-02
87GO:0015095: magnesium ion transmembrane transporter activity2.37E-02
88GO:0008422: beta-glucosidase activity2.52E-02
89GO:0004674: protein serine/threonine kinase activity2.53E-02
90GO:0004871: signal transducer activity2.56E-02
91GO:0042803: protein homodimerization activity2.56E-02
92GO:0008083: growth factor activity2.58E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.58E-02
94GO:0008266: poly(U) RNA binding2.58E-02
95GO:0046983: protein dimerization activity2.63E-02
96GO:0003712: transcription cofactor activity2.80E-02
97GO:0008146: sulfotransferase activity2.80E-02
98GO:0004190: aspartic-type endopeptidase activity2.80E-02
99GO:0035091: phosphatidylinositol binding3.22E-02
100GO:0005524: ATP binding3.38E-02
101GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.47E-02
102GO:0008408: 3'-5' exonuclease activity3.74E-02
103GO:0033612: receptor serine/threonine kinase binding3.74E-02
104GO:0008168: methyltransferase activity4.39E-02
105GO:0015171: amino acid transmembrane transporter activity4.43E-02
106GO:0000287: magnesium ion binding4.49E-02
107GO:0003756: protein disulfide isomerase activity4.51E-02
108GO:0004812: aminoacyl-tRNA ligase activity4.77E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.02E-09
2GO:0009941: chloroplast envelope3.64E-07
3GO:0009570: chloroplast stroma1.34E-06
4GO:0009534: chloroplast thylakoid1.50E-04
5GO:0009508: plastid chromosome2.35E-04
6GO:0000427: plastid-encoded plastid RNA polymerase complex1.26E-03
7GO:0031357: integral component of chloroplast inner membrane1.26E-03
8GO:0009536: plastid1.27E-03
9GO:0010319: stromule1.90E-03
10GO:0009295: nucleoid1.90E-03
11GO:0009528: plastid inner membrane2.07E-03
12GO:0019897: extrinsic component of plasma membrane2.07E-03
13GO:0030139: endocytic vesicle2.07E-03
14GO:0009317: acetyl-CoA carboxylase complex2.07E-03
15GO:0009535: chloroplast thylakoid membrane2.76E-03
16GO:0032585: multivesicular body membrane3.01E-03
17GO:0009527: plastid outer membrane4.06E-03
18GO:0009544: chloroplast ATP synthase complex4.06E-03
19GO:0009654: photosystem II oxygen evolving complex4.25E-03
20GO:0005886: plasma membrane4.80E-03
21GO:0015629: actin cytoskeleton5.60E-03
22GO:0005655: nucleolar ribonuclease P complex7.81E-03
23GO:0019898: extrinsic component of membrane8.91E-03
24GO:0009986: cell surface9.25E-03
25GO:0048226: Casparian strip1.08E-02
26GO:0009706: chloroplast inner membrane1.34E-02
27GO:0000418: DNA-directed RNA polymerase IV complex1.77E-02
28GO:0009543: chloroplast thylakoid lumen1.78E-02
29GO:0009707: chloroplast outer membrane1.82E-02
30GO:0031969: chloroplast membrane1.83E-02
31GO:0090404: pollen tube tip1.96E-02
32GO:0005884: actin filament1.96E-02
33GO:0030095: chloroplast photosystem II2.58E-02
34GO:0005856: cytoskeleton3.34E-02
35GO:0009532: plastid stroma3.74E-02
36GO:0043231: intracellular membrane-bounded organelle3.75E-02
37GO:0046658: anchored component of plasma membrane3.79E-02
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Gene type



Gene DE type