co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0043488: regulation of mRNA stability	0.00E+00
4	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0006573: valine metabolic process	0.00E+00
7	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0008298: intracellular mRNA localization	0.00E+00
12	GO:0071474: cellular hyperosmotic response	0.00E+00
13	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.37E-06
14	GO:0005977: glycogen metabolic process	8.63E-06
15	GO:0010239: chloroplast mRNA processing	1.97E-05
16	GO:0010021: amylopectin biosynthetic process	3.60E-05
17	GO:0009658: chloroplast organization	3.68E-05
18	GO:0019252: starch biosynthetic process	2.03E-04
19	GO:0070574: cadmium ion transmembrane transport	2.25E-04
20	GO:0010028: xanthophyll cycle	2.25E-04
21	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.25E-04
22	GO:0000476: maturation of 4.5S rRNA	2.25E-04
23	GO:0000967: rRNA 5'-end processing	2.25E-04
24	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.25E-04
25	GO:0031426: polycistronic mRNA processing	2.25E-04
26	GO:0006637: acyl-CoA metabolic process	2.25E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.25E-04
28	GO:0043266: regulation of potassium ion transport	2.25E-04
29	GO:0010063: positive regulation of trichoblast fate specification	2.25E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.25E-04
31	GO:0006551: leucine metabolic process	2.25E-04
32	GO:2000021: regulation of ion homeostasis	2.25E-04
33	GO:0009098: leucine biosynthetic process	3.51E-04
34	GO:0019684: photosynthesis, light reaction	4.76E-04
35	GO:0010024: phytochromobilin biosynthetic process	5.00E-04
36	GO:0051262: protein tetramerization	5.00E-04
37	GO:0034470: ncRNA processing	5.00E-04
38	GO:0060359: response to ammonium ion	5.00E-04
39	GO:1900871: chloroplast mRNA modification	5.00E-04
40	GO:0000256: allantoin catabolic process	5.00E-04
41	GO:1904143: positive regulation of carotenoid biosynthetic process	5.00E-04
42	GO:0009767: photosynthetic electron transport chain	6.19E-04
43	GO:0019853: L-ascorbic acid biosynthetic process	7.77E-04
44	GO:0043157: response to cation stress	8.13E-04
45	GO:0006788: heme oxidation	8.13E-04
46	GO:0006954: inflammatory response	8.13E-04
47	GO:0010136: ureide catabolic process	8.13E-04
48	GO:0034051: negative regulation of plant-type hypersensitive response	8.13E-04
49	GO:0031145: anaphase-promoting complex-dependent catabolic process	8.13E-04
50	GO:0015940: pantothenate biosynthetic process	8.13E-04
51	GO:0010071: root meristem specification	1.16E-03
52	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.16E-03
53	GO:0006145: purine nucleobase catabolic process	1.16E-03
54	GO:0009226: nucleotide-sugar biosynthetic process	1.16E-03
55	GO:0016556: mRNA modification	1.16E-03
56	GO:0090308: regulation of methylation-dependent chromatin silencing	1.16E-03
57	GO:0048442: sepal development	1.54E-03
58	GO:0031122: cytoplasmic microtubule organization	1.54E-03
59	GO:0006021: inositol biosynthetic process	1.54E-03
60	GO:0010087: phloem or xylem histogenesis	1.73E-03
61	GO:0009107: lipoate biosynthetic process	1.97E-03
62	GO:0032876: negative regulation of DNA endoreduplication	1.97E-03
63	GO:0080110: sporopollenin biosynthetic process	1.97E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	1.97E-03
65	GO:0009416: response to light stimulus	2.27E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.43E-03
67	GO:0009959: negative gravitropism	2.43E-03
68	GO:0032973: amino acid export	2.43E-03
69	GO:0046855: inositol phosphate dephosphorylation	2.43E-03
70	GO:0050665: hydrogen peroxide biosynthetic process	2.43E-03
71	GO:0032502: developmental process	2.45E-03
72	GO:0019761: glucosinolate biosynthetic process	2.45E-03
73	GO:1901259: chloroplast rRNA processing	2.91E-03
74	GO:0010076: maintenance of floral meristem identity	2.91E-03
75	GO:0009082: branched-chain amino acid biosynthetic process	2.91E-03
76	GO:0048280: vesicle fusion with Golgi apparatus	2.91E-03
77	GO:0009099: valine biosynthetic process	2.91E-03
78	GO:0009854: oxidative photosynthetic carbon pathway	2.91E-03
79	GO:0010019: chloroplast-nucleus signaling pathway	2.91E-03
80	GO:0010027: thylakoid membrane organization	3.31E-03
81	GO:0009395: phospholipid catabolic process	3.43E-03
82	GO:0043090: amino acid import	3.43E-03
83	GO:0048437: floral organ development	3.43E-03
84	GO:0006400: tRNA modification	3.43E-03
85	GO:0015995: chlorophyll biosynthetic process	3.89E-03
86	GO:0007155: cell adhesion	3.98E-03
87	GO:0048564: photosystem I assembly	3.98E-03
88	GO:0006875: cellular metal ion homeostasis	3.98E-03
89	GO:0009690: cytokinin metabolic process	3.98E-03
90	GO:0010078: maintenance of root meristem identity	3.98E-03
91	GO:0032875: regulation of DNA endoreduplication	3.98E-03
92	GO:0009451: RNA modification	4.47E-03
93	GO:0043562: cellular response to nitrogen levels	4.56E-03
94	GO:0017004: cytochrome complex assembly	4.56E-03
95	GO:0009097: isoleucine biosynthetic process	4.56E-03
96	GO:0010204: defense response signaling pathway, resistance gene-independent	4.56E-03
97	GO:0032544: plastid translation	4.56E-03
98	GO:0000902: cell morphogenesis	5.16E-03
99	GO:0098656: anion transmembrane transport	5.16E-03
100	GO:0048507: meristem development	5.16E-03
101	GO:0080144: amino acid homeostasis	5.16E-03
102	GO:0006896: Golgi to vacuole transport	6.45E-03
103	GO:0019538: protein metabolic process	6.45E-03
104	GO:0048441: petal development	6.45E-03
105	GO:0010216: maintenance of DNA methylation	7.13E-03
106	GO:0009684: indoleacetic acid biosynthetic process	7.13E-03
107	GO:0009089: lysine biosynthetic process via diaminopimelate	7.13E-03
108	GO:0006415: translational termination	7.13E-03
109	GO:0043085: positive regulation of catalytic activity	7.13E-03
110	GO:0006790: sulfur compound metabolic process	7.84E-03
111	GO:0009718: anthocyanin-containing compound biosynthetic process	8.57E-03
112	GO:0010588: cotyledon vascular tissue pattern formation	8.57E-03
113	GO:0048467: gynoecium development	9.33E-03
114	GO:0048440: carpel development	9.33E-03
115	GO:0010207: photosystem II assembly	9.33E-03
116	GO:0046854: phosphatidylinositol phosphorylation	1.01E-02
117	GO:0048367: shoot system development	1.16E-02
118	GO:0015979: photosynthesis	1.18E-02
119	GO:0008299: isoprenoid biosynthetic process	1.26E-02
120	GO:0006730: one-carbon metabolic process	1.43E-02
121	GO:0006012: galactose metabolic process	1.53E-02
122	GO:0009686: gibberellin biosynthetic process	1.53E-02
123	GO:0010584: pollen exine formation	1.62E-02
124	GO:0048443: stamen development	1.62E-02
125	GO:0042127: regulation of cell proliferation	1.62E-02
126	GO:0009306: protein secretion	1.62E-02
127	GO:0042147: retrograde transport, endosome to Golgi	1.71E-02
128	GO:0080022: primary root development	1.81E-02
129	GO:0009741: response to brassinosteroid	1.91E-02
130	GO:0010268: brassinosteroid homeostasis	1.91E-02
131	GO:0045489: pectin biosynthetic process	1.91E-02
132	GO:0009958: positive gravitropism	1.91E-02
133	GO:0010305: leaf vascular tissue pattern formation	1.91E-02
134	GO:0009646: response to absence of light	2.01E-02
135	GO:0055072: iron ion homeostasis	2.11E-02
136	GO:0009851: auxin biosynthetic process	2.11E-02
137	GO:0006623: protein targeting to vacuole	2.11E-02
138	GO:0009791: post-embryonic development	2.11E-02
139	GO:0048825: cotyledon development	2.11E-02
140	GO:0006413: translational initiation	2.19E-02
141	GO:0016132: brassinosteroid biosynthetic process	2.22E-02
142	GO:0071554: cell wall organization or biogenesis	2.22E-02
143	GO:0006891: intra-Golgi vesicle-mediated transport	2.22E-02
144	GO:0009630: gravitropism	2.32E-02
145	GO:0016125: sterol metabolic process	2.54E-02
146	GO:0008380: RNA splicing	2.80E-02
147	GO:0016126: sterol biosynthetic process	2.88E-02
148	GO:0006888: ER to Golgi vesicle-mediated transport	3.24E-02
149	GO:0016311: dephosphorylation	3.36E-02
150	GO:0048481: plant ovule development	3.48E-02
151	GO:0018298: protein-chromophore linkage	3.48E-02
152	GO:0055114: oxidation-reduction process	3.51E-02
153	GO:0048527: lateral root development	3.86E-02
154	GO:0045087: innate immune response	4.12E-02
155	GO:0016051: carbohydrate biosynthetic process	4.12E-02
156	GO:0009723: response to ethylene	4.19E-02
157	GO:0006839: mitochondrial transport	4.52E-02
158	GO:0030001: metal ion transport	4.52E-02
159	GO:0051707: response to other organism	4.93E-02
160	GO:0008283: cell proliferation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
6	GO:0019156: isoamylase activity	2.37E-06
7	GO:0004556: alpha-amylase activity	8.46E-05
8	GO:0019899: enzyme binding	1.54E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.25E-04
10	GO:0046906: tetrapyrrole binding	2.25E-04
11	GO:0005227: calcium activated cation channel activity	2.25E-04
12	GO:0004451: isocitrate lyase activity	2.25E-04
13	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.25E-04
14	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.25E-04
15	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.25E-04
16	GO:0051777: ent-kaurenoate oxidase activity	2.25E-04
17	GO:0008568: microtubule-severing ATPase activity	2.25E-04
18	GO:0003984: acetolactate synthase activity	2.25E-04
19	GO:0005080: protein kinase C binding	2.25E-04
20	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.00E-04
21	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.00E-04
22	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.00E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	5.00E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	5.00E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	5.00E-04
26	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.00E-04
27	GO:0048531: beta-1,3-galactosyltransferase activity	5.00E-04
28	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.00E-04
29	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.00E-04
30	GO:0003993: acid phosphatase activity	7.39E-04
31	GO:0070402: NADPH binding	8.13E-04
32	GO:0016992: lipoate synthase activity	8.13E-04
33	GO:0003913: DNA photolyase activity	8.13E-04
34	GO:0004848: ureidoglycolate hydrolase activity	8.13E-04
35	GO:0003861: 3-isopropylmalate dehydratase activity	8.13E-04
36	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.16E-03
37	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.16E-03
38	GO:0048027: mRNA 5'-UTR binding	1.16E-03
39	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.16E-03
40	GO:0015086: cadmium ion transmembrane transporter activity	1.16E-03
41	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.16E-03
42	GO:0016836: hydro-lyase activity	1.54E-03
43	GO:0004045: aminoacyl-tRNA hydrolase activity	1.54E-03
44	GO:0080032: methyl jasmonate esterase activity	1.54E-03
45	GO:0043495: protein anchor	1.54E-03
46	GO:0009011: starch synthase activity	1.54E-03
47	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.54E-03
48	GO:0004392: heme oxygenase (decyclizing) activity	1.54E-03
49	GO:0008891: glycolate oxidase activity	1.54E-03
50	GO:0016846: carbon-sulfur lyase activity	1.97E-03
51	GO:0008200: ion channel inhibitor activity	2.43E-03
52	GO:0080030: methyl indole-3-acetate esterase activity	2.43E-03
53	GO:0003824: catalytic activity	2.71E-03
54	GO:0008195: phosphatidate phosphatase activity	2.91E-03
55	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.91E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.91E-03
57	GO:0005261: cation channel activity	2.91E-03
58	GO:0003730: mRNA 3'-UTR binding	2.91E-03
59	GO:0015103: inorganic anion transmembrane transporter activity	3.43E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	3.98E-03
61	GO:0004222: metalloendopeptidase activity	4.75E-03
62	GO:0003747: translation release factor activity	5.16E-03
63	GO:0047617: acyl-CoA hydrolase activity	5.79E-03
64	GO:0015020: glucuronosyltransferase activity	6.45E-03
65	GO:0035091: phosphatidylinositol binding	7.61E-03
66	GO:0009982: pseudouridine synthase activity	8.57E-03
67	GO:0005315: inorganic phosphate transmembrane transporter activity	8.57E-03
68	GO:0008266: poly(U) RNA binding	9.33E-03
69	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.33E-03
70	GO:0003723: RNA binding	9.36E-03
71	GO:0005528: FK506 binding	1.17E-02
72	GO:0016491: oxidoreductase activity	1.26E-02
73	GO:0022891: substrate-specific transmembrane transporter activity	1.53E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.62E-02
75	GO:0004519: endonuclease activity	1.82E-02
76	GO:0046873: metal ion transmembrane transporter activity	1.91E-02
77	GO:0008080: N-acetyltransferase activity	1.91E-02
78	GO:0016853: isomerase activity	2.01E-02
79	GO:0010181: FMN binding	2.01E-02
80	GO:0050662: coenzyme binding	2.01E-02
81	GO:0008565: protein transporter activity	2.04E-02
82	GO:0048038: quinone binding	2.22E-02
83	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.65E-02
84	GO:0008237: metallopeptidase activity	2.65E-02
85	GO:0003743: translation initiation factor activity	2.75E-02
86	GO:0016413: O-acetyltransferase activity	2.77E-02
87	GO:0016597: amino acid binding	2.77E-02
88	GO:0042802: identical protein binding	2.99E-02
89	GO:0016168: chlorophyll binding	3.00E-02
90	GO:0008375: acetylglucosaminyltransferase activity	3.12E-02
91	GO:0004721: phosphoprotein phosphatase activity	3.24E-02
92	GO:0016788: hydrolase activity, acting on ester bonds	3.70E-02
93	GO:0030145: manganese ion binding	3.86E-02
94	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.86E-02
95	GO:0000149: SNARE binding	4.39E-02
96	GO:0004185: serine-type carboxypeptidase activity	4.93E-02
97	GO:0005484: SNAP receptor activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	1.12E-27
4	GO:0009570: chloroplast stroma	2.20E-07
5	GO:0009535: chloroplast thylakoid membrane	2.09E-05
6	GO:0009344: nitrite reductase complex [NAD(P)H]	2.25E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	5.00E-04
8	GO:0033281: TAT protein transport complex	8.13E-04
9	GO:0009654: photosystem II oxygen evolving complex	1.05E-03
10	GO:0019898: extrinsic component of membrane	2.15E-03
11	GO:0009706: chloroplast inner membrane	2.17E-03
12	GO:0009941: chloroplast envelope	2.60E-03
13	GO:0009543: chloroplast thylakoid lumen	2.88E-03
14	GO:0030529: intracellular ribonucleoprotein complex	3.31E-03
15	GO:0009536: plastid	3.37E-03
16	GO:0012507: ER to Golgi transport vesicle membrane	3.98E-03
17	GO:0009501: amyloplast	3.98E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.56E-03
19	GO:0005680: anaphase-promoting complex	5.16E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.16E-03
21	GO:0042644: chloroplast nucleoid	5.16E-03
22	GO:0005720: nuclear heterochromatin	5.16E-03
23	GO:0016604: nuclear body	5.79E-03
24	GO:0009508: plastid chromosome	8.57E-03
25	GO:0030095: chloroplast photosystem II	9.33E-03
26	GO:0031969: chloroplast membrane	9.96E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	1.01E-02
28	GO:0042651: thylakoid membrane	1.26E-02
29	GO:0043231: intracellular membrane-bounded organelle	1.85E-02
30	GO:0009523: photosystem II	2.11E-02
31	GO:0009705: plant-type vacuole membrane	2.35E-02
32	GO:0009295: nucleoid	2.65E-02
33	GO:0009707: chloroplast outer membrane	3.48E-02
34	GO:0009534: chloroplast thylakoid	4.23E-02
35	GO:0031201: SNARE complex	4.66E-02
36	GO:0031902: late endosome membrane	4.66E-02
37	GO:0031977: thylakoid lumen	4.66E-02