co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051553: flavone biosynthetic process	0.00E+00
2	GO:0010324: membrane invagination	0.00E+00
3	GO:0010055: atrichoblast differentiation	0.00E+00
4	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
5	GO:1902001: fatty acid transmembrane transport	0.00E+00
6	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
7	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
8	GO:0015690: aluminum cation transport	0.00E+00
9	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
10	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
11	GO:0032515: negative regulation of phosphoprotein phosphatase activity	0.00E+00
12	GO:0046865: terpenoid transport	0.00E+00
13	GO:0018063: cytochrome c-heme linkage	0.00E+00
14	GO:0010112: regulation of systemic acquired resistance	1.26E-06
15	GO:0071456: cellular response to hypoxia	1.43E-06
16	GO:0006952: defense response	3.39E-06
17	GO:0051707: response to other organism	1.03E-05
18	GO:0009751: response to salicylic acid	2.06E-05
19	GO:0042742: defense response to bacterium	2.36E-05
20	GO:0010150: leaf senescence	3.44E-05
21	GO:0045227: capsule polysaccharide biosynthetic process	1.39E-04
22	GO:0033358: UDP-L-arabinose biosynthetic process	1.39E-04
23	GO:0009636: response to toxic substance	1.41E-04
24	GO:0009225: nucleotide-sugar metabolic process	2.36E-04
25	GO:0009759: indole glucosinolate biosynthetic process	3.01E-04
26	GO:0009643: photosynthetic acclimation	3.01E-04
27	GO:0080147: root hair cell development	3.17E-04
28	GO:0006979: response to oxidative stress	3.65E-04
29	GO:0009968: negative regulation of signal transduction	5.00E-04
30	GO:1990542: mitochondrial transmembrane transport	5.00E-04
31	GO:0032107: regulation of response to nutrient levels	5.00E-04
32	GO:1902600: hydrogen ion transmembrane transport	5.00E-04
33	GO:0048508: embryonic meristem development	5.00E-04
34	GO:0015760: glucose-6-phosphate transport	5.00E-04
35	GO:0046256: 2,4,6-trinitrotoluene catabolic process	5.00E-04
36	GO:0043547: positive regulation of GTPase activity	5.00E-04
37	GO:0019567: arabinose biosynthetic process	5.00E-04
38	GO:0080173: male-female gamete recognition during double fertilization	5.00E-04
39	GO:0033306: phytol metabolic process	5.00E-04
40	GO:0010482: regulation of epidermal cell division	5.00E-04
41	GO:0009700: indole phytoalexin biosynthetic process	5.00E-04
42	GO:0010230: alternative respiration	5.00E-04
43	GO:0050691: regulation of defense response to virus by host	5.00E-04
44	GO:0034214: protein hexamerization	5.00E-04
45	GO:1900057: positive regulation of leaf senescence	5.16E-04
46	GO:0006012: galactose metabolic process	5.20E-04
47	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	6.43E-04
48	GO:0042391: regulation of membrane potential	7.10E-04
49	GO:0010120: camalexin biosynthetic process	7.83E-04
50	GO:0006098: pentose-phosphate shunt	9.36E-04
51	GO:0010200: response to chitin	9.39E-04
52	GO:0071668: plant-type cell wall assembly	1.08E-03
53	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.08E-03
54	GO:0009838: abscission	1.08E-03
55	GO:0080181: lateral root branching	1.08E-03
56	GO:0055088: lipid homeostasis	1.08E-03
57	GO:0019521: D-gluconate metabolic process	1.08E-03
58	GO:0010115: regulation of abscisic acid biosynthetic process	1.08E-03
59	GO:0000719: photoreactive repair	1.08E-03
60	GO:0015908: fatty acid transport	1.08E-03
61	GO:0044419: interspecies interaction between organisms	1.08E-03
62	GO:0010271: regulation of chlorophyll catabolic process	1.08E-03
63	GO:0009945: radial axis specification	1.08E-03
64	GO:0015712: hexose phosphate transport	1.08E-03
65	GO:0019725: cellular homeostasis	1.08E-03
66	GO:0051258: protein polymerization	1.08E-03
67	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.10E-03
68	GO:0007166: cell surface receptor signaling pathway	1.36E-03
69	GO:0009617: response to bacterium	1.46E-03
70	GO:0009684: indoleacetic acid biosynthetic process	1.48E-03
71	GO:0009682: induced systemic resistance	1.48E-03
72	GO:0010186: positive regulation of cellular defense response	1.76E-03
73	GO:0015783: GDP-fucose transport	1.76E-03
74	GO:0015692: lead ion transport	1.76E-03
75	GO:0015695: organic cation transport	1.76E-03
76	GO:0015714: phosphoenolpyruvate transport	1.76E-03
77	GO:0080168: abscisic acid transport	1.76E-03
78	GO:1900055: regulation of leaf senescence	1.76E-03
79	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.76E-03
80	GO:0006954: inflammatory response	1.76E-03
81	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	1.76E-03
82	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.76E-03
83	GO:0035436: triose phosphate transmembrane transport	1.76E-03
84	GO:0010116: positive regulation of abscisic acid biosynthetic process	2.56E-03
85	GO:0006020: inositol metabolic process	2.56E-03
86	GO:0002239: response to oomycetes	2.56E-03
87	GO:0010731: protein glutathionylation	2.56E-03
88	GO:0015696: ammonium transport	2.56E-03
89	GO:0051289: protein homotetramerization	2.56E-03
90	GO:0009407: toxin catabolic process	2.58E-03
91	GO:0000162: tryptophan biosynthetic process	2.73E-03
92	GO:0009737: response to abscisic acid	2.98E-03
93	GO:2000377: regulation of reactive oxygen species metabolic process	3.03E-03
94	GO:0050832: defense response to fungus	3.08E-03
95	GO:0006874: cellular calcium ion homeostasis	3.34E-03
96	GO:1901141: regulation of lignin biosynthetic process	3.44E-03
97	GO:0010109: regulation of photosynthesis	3.44E-03
98	GO:0060548: negative regulation of cell death	3.44E-03
99	GO:0048830: adventitious root development	3.44E-03
100	GO:0072488: ammonium transmembrane transport	3.44E-03
101	GO:0051567: histone H3-K9 methylation	3.44E-03
102	GO:0015713: phosphoglycerate transport	3.44E-03
103	GO:0009625: response to insect	4.39E-03
104	GO:0016094: polyprenol biosynthetic process	4.41E-03
105	GO:0034052: positive regulation of plant-type hypersensitive response	4.41E-03
106	GO:0006855: drug transmembrane transport	5.21E-03
107	GO:0010256: endomembrane system organization	5.46E-03
108	GO:0031347: regulation of defense response	5.46E-03
109	GO:0033365: protein localization to organelle	5.46E-03
110	GO:0006574: valine catabolic process	5.46E-03
111	GO:0071470: cellular response to osmotic stress	6.60E-03
112	GO:0042372: phylloquinone biosynthetic process	6.60E-03
113	GO:0045926: negative regulation of growth	6.60E-03
114	GO:0009942: longitudinal axis specification	6.60E-03
115	GO:0006623: protein targeting to vacuole	6.98E-03
116	GO:0009749: response to glucose	6.98E-03
117	GO:0002229: defense response to oomycetes	7.48E-03
118	GO:0010193: response to ozone	7.48E-03
119	GO:0009753: response to jasmonic acid	7.60E-03
120	GO:1902074: response to salt	7.80E-03
121	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	7.80E-03
122	GO:0043090: amino acid import	7.80E-03
123	GO:0071446: cellular response to salicylic acid stimulus	7.80E-03
124	GO:1900056: negative regulation of leaf senescence	7.80E-03
125	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	7.80E-03
126	GO:0050829: defense response to Gram-negative bacterium	7.80E-03
127	GO:0009620: response to fungus	8.75E-03
128	GO:0031540: regulation of anthocyanin biosynthetic process	9.09E-03
129	GO:0010928: regulation of auxin mediated signaling pathway	9.09E-03
130	GO:0030091: protein repair	9.09E-03
131	GO:0009787: regulation of abscisic acid-activated signaling pathway	9.09E-03
132	GO:0009819: drought recovery	9.09E-03
133	GO:0043068: positive regulation of programmed cell death	9.09E-03
134	GO:0017004: cytochrome complex assembly	1.04E-02
135	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.04E-02
136	GO:0010208: pollen wall assembly	1.04E-02
137	GO:0006997: nucleus organization	1.04E-02
138	GO:0010204: defense response signaling pathway, resistance gene-independent	1.04E-02
139	GO:0006468: protein phosphorylation	1.12E-02
140	GO:0015780: nucleotide-sugar transport	1.19E-02
141	GO:0007338: single fertilization	1.19E-02
142	GO:0019432: triglyceride biosynthetic process	1.19E-02
143	GO:0009627: systemic acquired resistance	1.21E-02
144	GO:0080167: response to karrikin	1.27E-02
145	GO:0008202: steroid metabolic process	1.34E-02
146	GO:0090332: stomatal closure	1.34E-02
147	GO:0048268: clathrin coat assembly	1.34E-02
148	GO:0010380: regulation of chlorophyll biosynthetic process	1.34E-02
149	GO:0015031: protein transport	1.43E-02
150	GO:0009641: shade avoidance	1.49E-02
151	GO:0051555: flavonol biosynthetic process	1.49E-02
152	GO:0019538: protein metabolic process	1.49E-02
153	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.49E-02
154	GO:0006032: chitin catabolic process	1.49E-02
155	GO:0048765: root hair cell differentiation	1.65E-02
156	GO:0019684: photosynthesis, light reaction	1.65E-02
157	GO:0009089: lysine biosynthetic process via diaminopimelate	1.65E-02
158	GO:0052544: defense response by callose deposition in cell wall	1.65E-02
159	GO:0007165: signal transduction	1.70E-02
160	GO:0000266: mitochondrial fission	1.82E-02
161	GO:0012501: programmed cell death	1.82E-02
162	GO:0040008: regulation of growth	1.86E-02
163	GO:2000028: regulation of photoperiodism, flowering	1.99E-02
164	GO:0006829: zinc II ion transport	1.99E-02
165	GO:0006887: exocytosis	2.15E-02
166	GO:0006897: endocytosis	2.15E-02
167	GO:0002237: response to molecule of bacterial origin	2.17E-02
168	GO:0006470: protein dephosphorylation	2.34E-02
169	GO:0046688: response to copper ion	2.36E-02
170	GO:0006825: copper ion transport	2.94E-02
171	GO:0051302: regulation of cell division	2.94E-02
172	GO:0010026: trichome differentiation	2.94E-02
173	GO:0006486: protein glycosylation	3.14E-02
174	GO:0016998: cell wall macromolecule catabolic process	3.15E-02
175	GO:0009269: response to desiccation	3.15E-02
176	GO:0016226: iron-sulfur cluster assembly	3.35E-02
177	GO:0009411: response to UV	3.57E-02
178	GO:0042127: regulation of cell proliferation	3.79E-02
179	GO:0009626: plant-type hypersensitive response	3.96E-02
180	GO:0070417: cellular response to cold	4.01E-02
181	GO:0009723: response to ethylene	4.08E-02
182	GO:0000413: protein peptidyl-prolyl isomerization	4.24E-02
183	GO:0000271: polysaccharide biosynthetic process	4.24E-02
184	GO:0009624: response to nematode	4.46E-02
185	GO:0010182: sugar mediated signaling pathway	4.47E-02
186	GO:0048868: pollen tube development	4.47E-02
187	GO:0045489: pectin biosynthetic process	4.47E-02
188	GO:0006520: cellular amino acid metabolic process	4.47E-02
189	GO:0009646: response to absence of light	4.71E-02
190	GO:0055114: oxidation-reduction process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0033759: flavone synthase activity	0.00E+00
3	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
4	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
5	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
6	GO:0004865: protein serine/threonine phosphatase inhibitor activity	0.00E+00
7	GO:0005212: structural constituent of eye lens	0.00E+00
8	GO:0003978: UDP-glucose 4-epimerase activity	1.20E-05
9	GO:0050373: UDP-arabinose 4-epimerase activity	1.39E-04
10	GO:0030552: cAMP binding	2.36E-04
11	GO:0030553: cGMP binding	2.36E-04
12	GO:0005216: ion channel activity	3.63E-04
13	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.02E-04
14	GO:0004656: procollagen-proline 4-dioxygenase activity	4.02E-04
15	GO:0015245: fatty acid transporter activity	5.00E-04
16	GO:0010285: L,L-diaminopimelate aminotransferase activity	5.00E-04
17	GO:0090353: polygalacturonase inhibitor activity	5.00E-04
18	GO:2001227: quercitrin binding	5.00E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	5.00E-04
20	GO:0047940: glucuronokinase activity	5.00E-04
21	GO:2001147: camalexin binding	5.00E-04
22	GO:0043295: glutathione binding	5.16E-04
23	GO:0047893: flavonol 3-O-glucosyltransferase activity	6.43E-04
24	GO:0005249: voltage-gated potassium channel activity	7.10E-04
25	GO:0030551: cyclic nucleotide binding	7.10E-04
26	GO:0047364: desulfoglucosinolate sulfotransferase activity	1.08E-03
27	GO:0015152: glucose-6-phosphate transmembrane transporter activity	1.08E-03
28	GO:0032934: sterol binding	1.08E-03
29	GO:0015036: disulfide oxidoreductase activity	1.08E-03
30	GO:0050736: O-malonyltransferase activity	1.08E-03
31	GO:0048531: beta-1,3-galactosyltransferase activity	1.08E-03
32	GO:0071917: triose-phosphate transmembrane transporter activity	1.76E-03
33	GO:0005457: GDP-fucose transmembrane transporter activity	1.76E-03
34	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.76E-03
35	GO:0004324: ferredoxin-NADP+ reductase activity	1.76E-03
36	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	1.76E-03
37	GO:0016531: copper chaperone activity	1.76E-03
38	GO:0032403: protein complex binding	1.76E-03
39	GO:0008375: acetylglucosaminyltransferase activity	1.87E-03
40	GO:0004970: ionotropic glutamate receptor activity	2.45E-03
41	GO:0005217: intracellular ligand-gated ion channel activity	2.45E-03
42	GO:0017077: oxidative phosphorylation uncoupler activity	2.56E-03
43	GO:0035529: NADH pyrophosphatase activity	2.56E-03
44	GO:0022890: inorganic cation transmembrane transporter activity	2.56E-03
45	GO:0004674: protein serine/threonine kinase activity	2.69E-03
46	GO:0016301: kinase activity	2.94E-03
47	GO:0001046: core promoter sequence-specific DNA binding	3.03E-03
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.09E-03
49	GO:0009916: alternative oxidase activity	3.44E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	3.44E-03
51	GO:0004834: tryptophan synthase activity	3.44E-03
52	GO:0004737: pyruvate decarboxylase activity	3.44E-03
53	GO:0050378: UDP-glucuronate 4-epimerase activity	3.44E-03
54	GO:0004930: G-protein coupled receptor activity	3.44E-03
55	GO:0035251: UDP-glucosyltransferase activity	3.68E-03
56	GO:0004364: glutathione transferase activity	4.06E-03
57	GO:0015297: antiporter activity	4.37E-03
58	GO:0047631: ADP-ribose diphosphatase activity	4.41E-03
59	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.41E-03
60	GO:0002094: polyprenyltransferase activity	4.41E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.41E-03
62	GO:0005496: steroid binding	4.41E-03
63	GO:0004499: N,N-dimethylaniline monooxygenase activity	4.78E-03
64	GO:0008519: ammonium transmembrane transporter activity	5.46E-03
65	GO:0030976: thiamine pyrophosphate binding	5.46E-03
66	GO:0000210: NAD+ diphosphatase activity	5.46E-03
67	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	6.60E-03
68	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	6.60E-03
69	GO:0102391: decanoate--CoA ligase activity	6.60E-03
70	GO:0005261: cation channel activity	6.60E-03
71	GO:0004144: diacylglycerol O-acyltransferase activity	6.60E-03
72	GO:0019901: protein kinase binding	6.98E-03
73	GO:0005509: calcium ion binding	7.23E-03
74	GO:0004467: long-chain fatty acid-CoA ligase activity	7.80E-03
75	GO:0016831: carboxy-lyase activity	7.80E-03
76	GO:0102425: myricetin 3-O-glucosyltransferase activity	7.80E-03
77	GO:0102360: daphnetin 3-O-glucosyltransferase activity	7.80E-03
78	GO:0004714: transmembrane receptor protein tyrosine kinase activity	9.09E-03
79	GO:0005544: calcium-dependent phospholipid binding	9.09E-03
80	GO:0004033: aldo-keto reductase (NADP) activity	9.09E-03
81	GO:0008483: transaminase activity	9.65E-03
82	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.65E-03
83	GO:0008142: oxysterol binding	1.04E-02
84	GO:0016758: transferase activity, transferring hexosyl groups	1.27E-02
85	GO:0004721: phosphoprotein phosphatase activity	1.28E-02
86	GO:0030247: polysaccharide binding	1.28E-02
87	GO:0047617: acyl-CoA hydrolase activity	1.34E-02
88	GO:0004568: chitinase activity	1.49E-02
89	GO:0005545: 1-phosphatidylinositol binding	1.49E-02
90	GO:0004864: protein phosphatase inhibitor activity	1.49E-02
91	GO:0015238: drug transmembrane transporter activity	1.49E-02
92	GO:0008559: xenobiotic-transporting ATPase activity	1.65E-02
93	GO:0015386: potassium:proton antiporter activity	1.65E-02
94	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.81E-02
95	GO:0004722: protein serine/threonine phosphatase activity	1.91E-02
96	GO:0005315: inorganic phosphate transmembrane transporter activity	1.99E-02
97	GO:0050661: NADP binding	2.06E-02
98	GO:0008266: poly(U) RNA binding	2.17E-02
99	GO:0008194: UDP-glycosyltransferase activity	2.27E-02
100	GO:0016757: transferase activity, transferring glycosyl groups	2.34E-02
101	GO:0008146: sulfotransferase activity	2.36E-02
102	GO:0051536: iron-sulfur cluster binding	2.74E-02
103	GO:0031418: L-ascorbic acid binding	2.74E-02
104	GO:0051287: NAD binding	2.83E-02
105	GO:0015079: potassium ion transmembrane transporter activity	2.94E-02
106	GO:0008324: cation transmembrane transporter activity	2.94E-02
107	GO:0019706: protein-cysteine S-palmitoyltransferase activity	3.15E-02
108	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.35E-02
109	GO:0043531: ADP binding	3.82E-02
110	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.08E-02
111	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.08E-02
112	GO:0004497: monooxygenase activity	4.44E-02
113	GO:0005199: structural constituent of cell wall	4.47E-02
114	GO:0046873: metal ion transmembrane transporter activity	4.47E-02
115	GO:0030276: clathrin binding	4.47E-02
116	GO:0015299: solute:proton antiporter activity	4.71E-02
117	GO:0050662: coenzyme binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0016021: integral component of membrane	7.22E-13
3	GO:0005794: Golgi apparatus	3.47E-08
4	GO:0005886: plasma membrane	4.59E-07
5	GO:0005802: trans-Golgi network	4.11E-05
6	GO:0000813: ESCRT I complex	2.13E-04
7	GO:0000164: protein phosphatase type 1 complex	2.13E-04
8	GO:0005768: endosome	2.58E-04
9	GO:0000138: Golgi trans cisterna	5.00E-04
10	GO:0005901: caveola	1.08E-03
11	GO:0031314: extrinsic component of mitochondrial inner membrane	1.08E-03
12	GO:0032580: Golgi cisterna membrane	1.29E-03
13	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.76E-03
14	GO:0008287: protein serine/threonine phosphatase complex	1.76E-03
15	GO:0009530: primary cell wall	1.76E-03
16	GO:0070062: extracellular exosome	2.56E-03
17	GO:0030658: transport vesicle membrane	2.56E-03
18	GO:0005743: mitochondrial inner membrane	5.92E-03
19	GO:0031965: nuclear membrane	6.98E-03
20	GO:0005887: integral component of plasma membrane	1.15E-02
21	GO:0017119: Golgi transport complex	1.49E-02
22	GO:0005578: proteinaceous extracellular matrix	1.99E-02
23	GO:0031012: extracellular matrix	1.99E-02
24	GO:0005789: endoplasmic reticulum membrane	2.10E-02
25	GO:0005777: peroxisome	2.30E-02
26	GO:0005795: Golgi stack	2.36E-02
27	GO:0005769: early endosome	2.55E-02
28	GO:0005758: mitochondrial intermembrane space	2.74E-02
29	GO:0070469: respiratory chain	2.94E-02
30	GO:0005905: clathrin-coated pit	3.15E-02
31	GO:0005741: mitochondrial outer membrane	3.15E-02
32	GO:0031225: anchored component of membrane	3.83E-02
33	GO:0030136: clathrin-coated vesicle	4.01E-02
34	GO:0000139: Golgi membrane	4.04E-02
35	GO:0019898: extrinsic component of membrane	4.94E-02
36	GO:0009504: cell plate	4.94E-02