co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
5	GO:2000023: regulation of lateral root development	0.00E+00
6	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
7	GO:0009451: RNA modification	6.24E-08
8	GO:0009793: embryo development ending in seed dormancy	1.11E-06
9	GO:0009658: chloroplast organization	4.78E-05
10	GO:0042793: transcription from plastid promoter	9.47E-05
11	GO:0034757: negative regulation of iron ion transport	2.41E-04
12	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.41E-04
13	GO:1900865: chloroplast RNA modification	3.89E-04
14	GO:0043039: tRNA aminoacylation	5.34E-04
15	GO:0006650: glycerophospholipid metabolic process	5.34E-04
16	GO:0010271: regulation of chlorophyll catabolic process	5.34E-04
17	GO:0042780: tRNA 3'-end processing	8.68E-04
18	GO:0045493: xylan catabolic process	8.68E-04
19	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.68E-04
20	GO:0045910: negative regulation of DNA recombination	8.68E-04
21	GO:0046168: glycerol-3-phosphate catabolic process	8.68E-04
22	GO:0080117: secondary growth	8.68E-04
23	GO:0006518: peptide metabolic process	8.68E-04
24	GO:0045017: glycerolipid biosynthetic process	1.24E-03
25	GO:0009102: biotin biosynthetic process	1.24E-03
26	GO:0010239: chloroplast mRNA processing	1.24E-03
27	GO:0006072: glycerol-3-phosphate metabolic process	1.24E-03
28	GO:0009800: cinnamic acid biosynthetic process	1.24E-03
29	GO:0009736: cytokinin-activated signaling pathway	1.58E-03
30	GO:0009956: radial pattern formation	1.65E-03
31	GO:0006021: inositol biosynthetic process	1.65E-03
32	GO:0010158: abaxial cell fate specification	2.11E-03
33	GO:0009696: salicylic acid metabolic process	2.11E-03
34	GO:0016554: cytidine to uridine editing	2.60E-03
35	GO:0006559: L-phenylalanine catabolic process	2.60E-03
36	GO:0048831: regulation of shoot system development	2.60E-03
37	GO:0009639: response to red or far red light	3.07E-03
38	GO:0048509: regulation of meristem development	3.12E-03
39	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.12E-03
40	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.68E-03
41	GO:0009610: response to symbiotic fungus	3.68E-03
42	GO:0010050: vegetative phase change	3.68E-03
43	GO:0010098: suspensor development	3.68E-03
44	GO:0009627: systemic acquired resistance	4.08E-03
45	GO:0000105: histidine biosynthetic process	4.27E-03
46	GO:0042255: ribosome assembly	4.27E-03
47	GO:0006353: DNA-templated transcription, termination	4.27E-03
48	GO:0009850: auxin metabolic process	4.27E-03
49	GO:0010411: xyloglucan metabolic process	4.31E-03
50	GO:0032544: plastid translation	4.89E-03
51	GO:0071482: cellular response to light stimulus	4.89E-03
52	GO:0007186: G-protein coupled receptor signaling pathway	4.89E-03
53	GO:0000160: phosphorelay signal transduction system	5.01E-03
54	GO:0000373: Group II intron splicing	5.54E-03
55	GO:0010018: far-red light signaling pathway	6.21E-03
56	GO:0006298: mismatch repair	6.92E-03
57	GO:0010192: mucilage biosynthetic process	6.92E-03
58	GO:0016485: protein processing	7.65E-03
59	GO:0009089: lysine biosynthetic process via diaminopimelate	7.65E-03
60	GO:0006790: sulfur compound metabolic process	8.41E-03
61	GO:0010582: floral meristem determinacy	8.41E-03
62	GO:0009636: response to toxic substance	8.76E-03
63	GO:0009965: leaf morphogenesis	8.76E-03
64	GO:0010540: basipetal auxin transport	1.00E-02
65	GO:0009933: meristem structural organization	1.00E-02
66	GO:0009416: response to light stimulus	1.05E-02
67	GO:0006364: rRNA processing	1.05E-02
68	GO:0046854: phosphatidylinositol phosphorylation	1.09E-02
69	GO:0009825: multidimensional cell growth	1.09E-02
70	GO:0080188: RNA-directed DNA methylation	1.09E-02
71	GO:0009833: plant-type primary cell wall biogenesis	1.17E-02
72	GO:0042753: positive regulation of circadian rhythm	1.17E-02
73	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-02
74	GO:0006338: chromatin remodeling	1.26E-02
75	GO:0006418: tRNA aminoacylation for protein translation	1.35E-02
76	GO:0006874: cellular calcium ion homeostasis	1.35E-02
77	GO:0006306: DNA methylation	1.45E-02
78	GO:0016226: iron-sulfur cluster assembly	1.54E-02
79	GO:0071215: cellular response to abscisic acid stimulus	1.64E-02
80	GO:0009686: gibberellin biosynthetic process	1.64E-02
81	GO:0016117: carotenoid biosynthetic process	1.84E-02
82	GO:0070417: cellular response to cold	1.84E-02
83	GO:0010087: phloem or xylem histogenesis	1.95E-02
84	GO:0006397: mRNA processing	1.96E-02
85	GO:0048868: pollen tube development	2.05E-02
86	GO:0010305: leaf vascular tissue pattern formation	2.05E-02
87	GO:0009958: positive gravitropism	2.05E-02
88	GO:0009790: embryo development	2.20E-02
89	GO:0008654: phospholipid biosynthetic process	2.27E-02
90	GO:0006633: fatty acid biosynthetic process	2.37E-02
91	GO:0080156: mitochondrial mRNA modification	2.38E-02
92	GO:0032502: developmental process	2.50E-02
93	GO:0010583: response to cyclopentenone	2.50E-02
94	GO:0031047: gene silencing by RNA	2.50E-02
95	GO:0009734: auxin-activated signaling pathway	2.85E-02
96	GO:0009739: response to gibberellin	2.91E-02
97	GO:0000910: cytokinesis	2.98E-02
98	GO:0016126: sterol biosynthetic process	3.10E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.23E-02
100	GO:0010029: regulation of seed germination	3.23E-02
101	GO:0009817: defense response to fungus, incompatible interaction	3.75E-02
102	GO:0030244: cellulose biosynthetic process	3.75E-02
103	GO:0009832: plant-type cell wall biogenesis	3.88E-02
104	GO:0006811: ion transport	4.01E-02
105	GO:0006839: mitochondrial transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004519: endonuclease activity	1.90E-09
9	GO:0003723: RNA binding	1.01E-04
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.41E-04
11	GO:0008836: diaminopimelate decarboxylase activity	2.41E-04
12	GO:0004831: tyrosine-tRNA ligase activity	2.41E-04
13	GO:0004047: aminomethyltransferase activity	5.34E-04
14	GO:0052832: inositol monophosphate 3-phosphatase activity	5.34E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.34E-04
16	GO:0008805: carbon-monoxide oxygenase activity	5.34E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	5.34E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	5.34E-04
19	GO:0050736: O-malonyltransferase activity	5.34E-04
20	GO:0009884: cytokinin receptor activity	5.34E-04
21	GO:0004222: metalloendopeptidase activity	6.66E-04
22	GO:0005034: osmosensor activity	8.68E-04
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.68E-04
24	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.68E-04
25	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.68E-04
26	GO:0045548: phenylalanine ammonia-lyase activity	8.68E-04
27	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.68E-04
28	GO:0080031: methyl salicylate esterase activity	1.24E-03
29	GO:0046556: alpha-L-arabinofuranosidase activity	1.65E-03
30	GO:0004930: G-protein coupled receptor activity	1.65E-03
31	GO:0009044: xylan 1,4-beta-xylosidase activity	1.65E-03
32	GO:0030983: mismatched DNA binding	2.60E-03
33	GO:0080030: methyl indole-3-acetate esterase activity	2.60E-03
34	GO:0019900: kinase binding	3.12E-03
35	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.12E-03
36	GO:0008237: metallopeptidase activity	3.26E-03
37	GO:0019843: rRNA binding	3.28E-03
38	GO:0003678: DNA helicase activity	5.54E-03
39	GO:0004673: protein histidine kinase activity	6.92E-03
40	GO:0000155: phosphorelay sensor kinase activity	9.20E-03
41	GO:0004970: ionotropic glutamate receptor activity	1.09E-02
42	GO:0005217: intracellular ligand-gated ion channel activity	1.09E-02
43	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.17E-02
44	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.17E-02
45	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.17E-02
46	GO:0031418: L-ascorbic acid binding	1.26E-02
47	GO:0004857: enzyme inhibitor activity	1.26E-02
48	GO:0008134: transcription factor binding	1.26E-02
49	GO:0043424: protein histidine kinase binding	1.35E-02
50	GO:0004176: ATP-dependent peptidase activity	1.45E-02
51	GO:0016760: cellulose synthase (UDP-forming) activity	1.64E-02
52	GO:0004386: helicase activity	1.64E-02
53	GO:0030570: pectate lyase activity	1.64E-02
54	GO:0003727: single-stranded RNA binding	1.74E-02
55	GO:0004812: aminoacyl-tRNA ligase activity	1.84E-02
56	GO:0019901: protein kinase binding	2.27E-02
57	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.38E-02
58	GO:0000156: phosphorelay response regulator activity	2.62E-02
59	GO:0016759: cellulose synthase activity	2.73E-02
60	GO:0003684: damaged DNA binding	2.73E-02
61	GO:0008483: transaminase activity	2.85E-02
62	GO:0016887: ATPase activity	3.21E-02
63	GO:0042802: identical protein binding	3.30E-02
64	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.48E-02
65	GO:0004806: triglyceride lipase activity	3.48E-02
66	GO:0016301: kinase activity	3.68E-02
67	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.01E-02
68	GO:0003697: single-stranded DNA binding	4.43E-02
69	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009507: chloroplast	1.09E-05
3	GO:0009513: etioplast	5.34E-04
4	GO:0009707: chloroplast outer membrane	5.88E-04
5	GO:0009509: chromoplast	8.68E-04
6	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.24E-03
7	GO:0005739: mitochondrion	2.77E-03
8	GO:0009501: amyloplast	4.27E-03
9	GO:0042644: chloroplast nucleoid	5.54E-03
10	GO:0016602: CCAAT-binding factor complex	9.20E-03
11	GO:0009508: plastid chromosome	9.20E-03
12	GO:0000419: DNA-directed RNA polymerase V complex	1.17E-02
13	GO:0009295: nucleoid	2.85E-02
14	GO:0009570: chloroplast stroma	4.33E-02