co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0000819: sister chromatid segregation	0.00E+00
4	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
5	GO:0000082: G1/S transition of mitotic cell cycle	4.27E-05
6	GO:0010583: response to cyclopentenone	4.66E-05
7	GO:0032958: inositol phosphate biosynthetic process	9.88E-05
8	GO:0048016: inositol phosphate-mediated signaling	9.88E-05
9	GO:0006438: valyl-tRNA aminoacylation	9.88E-05
10	GO:0061062: regulation of nematode larval development	2.32E-04
11	GO:0001736: establishment of planar polarity	2.32E-04
12	GO:0000086: G2/M transition of mitotic cell cycle	2.32E-04
13	GO:1901529: positive regulation of anion channel activity	2.32E-04
14	GO:0016045: detection of bacterium	3.86E-04
15	GO:0001578: microtubule bundle formation	3.86E-04
16	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	3.86E-04
17	GO:0042127: regulation of cell proliferation	4.98E-04
18	GO:0006020: inositol metabolic process	5.54E-04
19	GO:0007276: gamete generation	5.54E-04
20	GO:0016572: histone phosphorylation	5.54E-04
21	GO:0051726: regulation of cell cycle	5.61E-04
22	GO:0042991: transcription factor import into nucleus	7.37E-04
23	GO:0009755: hormone-mediated signaling pathway	7.37E-04
24	GO:0051322: anaphase	7.37E-04
25	GO:0048497: maintenance of floral organ identity	9.32E-04
26	GO:0032957: inositol trisphosphate metabolic process	9.32E-04
27	GO:0010389: regulation of G2/M transition of mitotic cell cycle	1.14E-03
28	GO:0046855: inositol phosphate dephosphorylation	1.14E-03
29	GO:0009733: response to auxin	1.26E-03
30	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.36E-03
31	GO:0010067: procambium histogenesis	1.36E-03
32	GO:0010444: guard mother cell differentiation	1.59E-03
33	GO:0000712: resolution of meiotic recombination intermediates	1.59E-03
34	GO:1900056: negative regulation of leaf senescence	1.59E-03
35	GO:0051301: cell division	1.78E-03
36	GO:0010492: maintenance of shoot apical meristem identity	1.84E-03
37	GO:0051276: chromosome organization	1.84E-03
38	GO:0048574: long-day photoperiodism, flowering	2.10E-03
39	GO:0048589: developmental growth	2.37E-03
40	GO:0010332: response to gamma radiation	2.37E-03
41	GO:0048829: root cap development	2.95E-03
42	GO:0009641: shade avoidance	2.95E-03
43	GO:0006949: syncytium formation	2.95E-03
44	GO:0006259: DNA metabolic process	2.95E-03
45	GO:0006782: protoporphyrinogen IX biosynthetic process	2.95E-03
46	GO:0009736: cytokinin-activated signaling pathway	3.04E-03
47	GO:0006265: DNA topological change	3.25E-03
48	GO:0048765: root hair cell differentiation	3.25E-03
49	GO:0046856: phosphatidylinositol dephosphorylation	3.25E-03
50	GO:0008285: negative regulation of cell proliferation	3.25E-03
51	GO:0010152: pollen maturation	3.57E-03
52	GO:0006312: mitotic recombination	3.57E-03
53	GO:0016024: CDP-diacylglycerol biosynthetic process	3.57E-03
54	GO:0010588: cotyledon vascular tissue pattern formation	3.89E-03
55	GO:0009887: animal organ morphogenesis	4.22E-03
56	GO:0009934: regulation of meristem structural organization	4.22E-03
57	GO:0009624: response to nematode	4.31E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	4.92E-03
59	GO:0006833: water transport	4.92E-03
60	GO:0019953: sexual reproduction	5.65E-03
61	GO:0006418: tRNA aminoacylation for protein translation	5.65E-03
62	GO:0003333: amino acid transmembrane transport	6.03E-03
63	GO:0071215: cellular response to abscisic acid stimulus	6.82E-03
64	GO:0009735: response to cytokinin	7.02E-03
65	GO:0010091: trichome branching	7.23E-03
66	GO:0048443: stamen development	7.23E-03
67	GO:0070417: cellular response to cold	7.64E-03
68	GO:0008284: positive regulation of cell proliferation	7.64E-03
69	GO:0009416: response to light stimulus	7.86E-03
70	GO:0034220: ion transmembrane transport	8.07E-03
71	GO:0010051: xylem and phloem pattern formation	8.07E-03
72	GO:0000226: microtubule cytoskeleton organization	8.07E-03
73	GO:0009958: positive gravitropism	8.50E-03
74	GO:0009741: response to brassinosteroid	8.50E-03
75	GO:0010305: leaf vascular tissue pattern formation	8.50E-03
76	GO:0007018: microtubule-based movement	8.94E-03
77	GO:0007059: chromosome segregation	8.94E-03
78	GO:0048825: cotyledon development	9.39E-03
79	GO:0071554: cell wall organization or biogenesis	9.85E-03
80	GO:0032502: developmental process	1.03E-02
81	GO:0009828: plant-type cell wall loosening	1.13E-02
82	GO:0006310: DNA recombination	1.13E-02
83	GO:0019760: glucosinolate metabolic process	1.13E-02
84	GO:0000910: cytokinesis	1.23E-02
85	GO:0048366: leaf development	1.36E-02
86	GO:0006974: cellular response to DNA damage stimulus	1.38E-02
87	GO:0015995: chlorophyll biosynthetic process	1.43E-02
88	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.48E-02
89	GO:0009817: defense response to fungus, incompatible interaction	1.54E-02
90	GO:0000160: phosphorelay signal transduction system	1.60E-02
91	GO:0010311: lateral root formation	1.60E-02
92	GO:0000724: double-strand break repair via homologous recombination	1.76E-02
93	GO:0006865: amino acid transport	1.76E-02
94	GO:0030001: metal ion transport	2.00E-02
95	GO:0016042: lipid catabolic process	2.05E-02
96	GO:0030154: cell differentiation	2.14E-02
97	GO:0009926: auxin polar transport	2.18E-02
98	GO:0009744: response to sucrose	2.18E-02
99	GO:0051707: response to other organism	2.18E-02
100	GO:0048364: root development	2.21E-02
101	GO:0006260: DNA replication	2.50E-02
102	GO:0009664: plant-type cell wall organization	2.57E-02
103	GO:0009734: auxin-activated signaling pathway	2.98E-02
104	GO:0006351: transcription, DNA-templated	3.03E-02
105	GO:0048316: seed development	3.11E-02
106	GO:0009626: plant-type hypersensitive response	3.18E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	3.62E-02
108	GO:0007275: multicellular organism development	4.46E-02
109	GO:0006633: fatty acid biosynthetic process	4.78E-02
110	GO:0040008: regulation of growth	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010011: auxin binding	8.78E-06
2	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.00E-05
3	GO:0004832: valine-tRNA ligase activity	9.88E-05
4	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	9.88E-05
5	GO:0000829: inositol heptakisphosphate kinase activity	9.88E-05
6	GO:0046030: inositol trisphosphate phosphatase activity	9.88E-05
7	GO:0000828: inositol hexakisphosphate kinase activity	9.88E-05
8	GO:0004109: coproporphyrinogen oxidase activity	2.32E-04
9	GO:0003916: DNA topoisomerase activity	5.54E-04
10	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.37E-04
11	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	7.37E-04
12	GO:0010328: auxin influx transmembrane transporter activity	7.37E-04
13	GO:0030332: cyclin binding	1.14E-03
14	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.14E-03
15	GO:0009378: four-way junction helicase activity	1.14E-03
16	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	1.14E-03
17	GO:0043138: 3'-5' DNA helicase activity	1.36E-03
18	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.10E-03
19	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	2.10E-03
20	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.10E-03
21	GO:0052689: carboxylic ester hydrolase activity	2.63E-03
22	GO:0003777: microtubule motor activity	3.36E-03
23	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.57E-03
24	GO:0003725: double-stranded RNA binding	3.89E-03
25	GO:0004565: beta-galactosidase activity	3.89E-03
26	GO:0003779: actin binding	4.18E-03
27	GO:0016746: transferase activity, transferring acyl groups	4.44E-03
28	GO:0003712: transcription cofactor activity	4.57E-03
29	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.92E-03
30	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.92E-03
31	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.92E-03
32	GO:0005515: protein binding	6.01E-03
33	GO:0008094: DNA-dependent ATPase activity	6.03E-03
34	GO:0030570: pectate lyase activity	6.82E-03
35	GO:0004812: aminoacyl-tRNA ligase activity	7.64E-03
36	GO:0008017: microtubule binding	7.77E-03
37	GO:0004672: protein kinase activity	8.15E-03
38	GO:0001085: RNA polymerase II transcription factor binding	8.50E-03
39	GO:0016853: isomerase activity	8.94E-03
40	GO:0000156: phosphorelay response regulator activity	1.08E-02
41	GO:0016791: phosphatase activity	1.13E-02
42	GO:0016788: hydrolase activity, acting on ester bonds	1.17E-02
43	GO:0016413: O-acetyltransferase activity	1.23E-02
44	GO:0015250: water channel activity	1.28E-02
45	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.65E-02
46	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.71E-02
47	GO:0042803: protein homodimerization activity	1.80E-02
48	GO:0005524: ATP binding	2.10E-02
49	GO:0015293: symporter activity	2.37E-02
50	GO:0016298: lipase activity	2.77E-02
51	GO:0015171: amino acid transmembrane transporter activity	2.90E-02
52	GO:0008026: ATP-dependent helicase activity	3.62E-02
53	GO:0016829: lyase activity	4.30E-02
54	GO:0004252: serine-type endopeptidase activity	4.38E-02
55	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.46E-02
56	GO:0004674: protein serine/threonine kinase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0005828: kinetochore microtubule	7.37E-04
3	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	7.37E-04
4	GO:0000793: condensed chromosome	1.14E-03
5	GO:0009986: cell surface	1.59E-03
6	GO:0000794: condensed nuclear chromosome	1.59E-03
7	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	2.10E-03
8	GO:0005874: microtubule	2.22E-03
9	GO:0000922: spindle pole	2.37E-03
10	GO:0009574: preprophase band	3.89E-03
11	GO:0005871: kinesin complex	7.64E-03
12	GO:0005694: chromosome	1.03E-02
13	GO:0005667: transcription factor complex	1.38E-02
14	GO:0005819: spindle	1.94E-02
15	GO:0009524: phragmoplast	4.22E-02