co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042352: GDP-L-fucose salvage	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:2000469: negative regulation of peroxidase activity	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0009734: auxin-activated signaling pathway	6.67E-09
9	GO:0009733: response to auxin	1.53E-08
10	GO:0040008: regulation of growth	5.72E-06
11	GO:0046620: regulation of organ growth	3.64E-05
12	GO:1900865: chloroplast RNA modification	9.01E-05
13	GO:0016131: brassinosteroid metabolic process	2.52E-04
14	GO:0016554: cytidine to uridine editing	3.54E-04
15	GO:0000023: maltose metabolic process	5.57E-04
16	GO:0000025: maltose catabolic process	5.57E-04
17	GO:0030198: extracellular matrix organization	5.57E-04
18	GO:0046520: sphingoid biosynthetic process	5.57E-04
19	GO:0010480: microsporocyte differentiation	5.57E-04
20	GO:1902458: positive regulation of stomatal opening	5.57E-04
21	GO:0015904: tetracycline transport	5.57E-04
22	GO:0030307: positive regulation of cell growth	6.04E-04
23	GO:2000070: regulation of response to water deprivation	7.52E-04
24	GO:0009416: response to light stimulus	8.44E-04
25	GO:0010182: sugar mediated signaling pathway	9.56E-04
26	GO:0006741: NADP biosynthetic process	1.20E-03
27	GO:0009629: response to gravity	1.20E-03
28	GO:1900871: chloroplast mRNA modification	1.20E-03
29	GO:0007154: cell communication	1.20E-03
30	GO:0018026: peptidyl-lysine monomethylation	1.20E-03
31	GO:0071497: cellular response to freezing	1.20E-03
32	GO:0080009: mRNA methylation	1.20E-03
33	GO:0009786: regulation of asymmetric cell division	1.20E-03
34	GO:0031648: protein destabilization	1.20E-03
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.20E-03
36	GO:0006568: tryptophan metabolic process	1.20E-03
37	GO:0071554: cell wall organization or biogenesis	1.25E-03
38	GO:0009638: phototropism	1.29E-03
39	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.30E-03
40	GO:0007275: multicellular organism development	1.50E-03
41	GO:0048829: root cap development	1.51E-03
42	GO:0090506: axillary shoot meristem initiation	1.97E-03
43	GO:0033591: response to L-ascorbic acid	1.97E-03
44	GO:1902448: positive regulation of shade avoidance	1.97E-03
45	GO:0071398: cellular response to fatty acid	1.97E-03
46	GO:0019674: NAD metabolic process	1.97E-03
47	GO:0005983: starch catabolic process	2.00E-03
48	GO:0010027: thylakoid membrane organization	2.00E-03
49	GO:0010588: cotyledon vascular tissue pattern formation	2.27E-03
50	GO:2000012: regulation of auxin polar transport	2.27E-03
51	GO:0010102: lateral root morphogenesis	2.27E-03
52	GO:0010628: positive regulation of gene expression	2.27E-03
53	GO:0010020: chloroplast fission	2.56E-03
54	GO:0043207: response to external biotic stimulus	2.86E-03
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.86E-03
56	GO:0019363: pyridine nucleotide biosynthetic process	2.86E-03
57	GO:0010371: regulation of gibberellin biosynthetic process	2.86E-03
58	GO:0042274: ribosomal small subunit biogenesis	3.85E-03
59	GO:0009755: hormone-mediated signaling pathway	3.85E-03
60	GO:1901141: regulation of lignin biosynthetic process	3.85E-03
61	GO:0010438: cellular response to sulfur starvation	4.94E-03
62	GO:0045487: gibberellin catabolic process	4.94E-03
63	GO:0045038: protein import into chloroplast thylakoid membrane	4.94E-03
64	GO:0048497: maintenance of floral organ identity	4.94E-03
65	GO:0009686: gibberellin biosynthetic process	5.18E-03
66	GO:0009926: auxin polar transport	5.27E-03
67	GO:0009959: negative gravitropism	6.12E-03
68	GO:0009913: epidermal cell differentiation	6.12E-03
69	GO:1902456: regulation of stomatal opening	6.12E-03
70	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.12E-03
71	GO:0042793: transcription from plastid promoter	6.12E-03
72	GO:0048831: regulation of shoot system development	6.12E-03
73	GO:0003006: developmental process involved in reproduction	6.12E-03
74	GO:0010405: arabinogalactan protein metabolic process	6.12E-03
75	GO:0080022: primary root development	6.61E-03
76	GO:0006662: glycerol ether metabolic process	7.13E-03
77	GO:2000033: regulation of seed dormancy process	7.40E-03
78	GO:0031930: mitochondria-nucleus signaling pathway	7.40E-03
79	GO:0030488: tRNA methylation	7.40E-03
80	GO:0009646: response to absence of light	7.67E-03
81	GO:0016042: lipid catabolic process	8.53E-03
82	GO:0030497: fatty acid elongation	8.76E-03
83	GO:0048437: floral organ development	8.76E-03
84	GO:0010098: suspensor development	8.76E-03
85	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	8.76E-03
86	GO:0010161: red light signaling pathway	8.76E-03
87	GO:0010583: response to cyclopentenone	9.43E-03
88	GO:1901657: glycosyl compound metabolic process	1.01E-02
89	GO:0009819: drought recovery	1.02E-02
90	GO:0006402: mRNA catabolic process	1.02E-02
91	GO:0010439: regulation of glucosinolate biosynthetic process	1.02E-02
92	GO:0009704: de-etiolation	1.02E-02
93	GO:0000105: histidine biosynthetic process	1.02E-02
94	GO:0010099: regulation of photomorphogenesis	1.17E-02
95	GO:0015996: chlorophyll catabolic process	1.17E-02
96	GO:0007186: G-protein coupled receptor signaling pathway	1.17E-02
97	GO:0010100: negative regulation of photomorphogenesis	1.17E-02
98	GO:0009658: chloroplast organization	1.17E-02
99	GO:0009742: brassinosteroid mediated signaling pathway	1.31E-02
100	GO:0051865: protein autoubiquitination	1.33E-02
101	GO:0048507: meristem development	1.33E-02
102	GO:0006783: heme biosynthetic process	1.33E-02
103	GO:0000373: Group II intron splicing	1.33E-02
104	GO:0000902: cell morphogenesis	1.33E-02
105	GO:0009098: leucine biosynthetic process	1.50E-02
106	GO:0031425: chloroplast RNA processing	1.50E-02
107	GO:0048573: photoperiodism, flowering	1.51E-02
108	GO:0010162: seed dormancy process	1.68E-02
109	GO:0009299: mRNA transcription	1.68E-02
110	GO:0009641: shade avoidance	1.68E-02
111	GO:0016441: posttranscriptional gene silencing	1.68E-02
112	GO:0009773: photosynthetic electron transport in photosystem I	1.86E-02
113	GO:0009682: induced systemic resistance	1.86E-02
114	GO:0009073: aromatic amino acid family biosynthetic process	1.86E-02
115	GO:0043085: positive regulation of catalytic activity	1.86E-02
116	GO:0000272: polysaccharide catabolic process	1.86E-02
117	GO:0048229: gametophyte development	1.86E-02
118	GO:0048527: lateral root development	1.94E-02
119	GO:0012501: programmed cell death	2.05E-02
120	GO:0045037: protein import into chloroplast stroma	2.05E-02
121	GO:0010582: floral meristem determinacy	2.05E-02
122	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.05E-02
123	GO:0045454: cell redox homeostasis	2.13E-02
124	GO:0045892: negative regulation of transcription, DNA-templated	2.18E-02
125	GO:0034599: cellular response to oxidative stress	2.23E-02
126	GO:0009785: blue light signaling pathway	2.24E-02
127	GO:0009691: cytokinin biosynthetic process	2.24E-02
128	GO:0006006: glucose metabolic process	2.24E-02
129	GO:2000028: regulation of photoperiodism, flowering	2.24E-02
130	GO:0010075: regulation of meristem growth	2.24E-02
131	GO:0009725: response to hormone	2.24E-02
132	GO:0009767: photosynthetic electron transport chain	2.24E-02
133	GO:0048467: gynoecium development	2.44E-02
134	GO:0010207: photosystem II assembly	2.44E-02
135	GO:0010223: secondary shoot formation	2.44E-02
136	GO:0009266: response to temperature stimulus	2.44E-02
137	GO:0009934: regulation of meristem structural organization	2.44E-02
138	GO:0006631: fatty acid metabolic process	2.54E-02
139	GO:0090351: seedling development	2.65E-02
140	GO:0009739: response to gibberellin	2.80E-02
141	GO:0000162: tryptophan biosynthetic process	2.86E-02
142	GO:0006071: glycerol metabolic process	2.86E-02
143	GO:0019762: glucosinolate catabolic process	2.86E-02
144	GO:0007166: cell surface receptor signaling pathway	2.87E-02
145	GO:0010187: negative regulation of seed germination	3.08E-02
146	GO:0005992: trehalose biosynthetic process	3.08E-02
147	GO:0009793: embryo development ending in seed dormancy	3.11E-02
148	GO:0009753: response to jasmonic acid	3.21E-02
149	GO:0006306: DNA methylation	3.54E-02
150	GO:0048278: vesicle docking	3.54E-02
151	GO:0016114: terpenoid biosynthetic process	3.54E-02
152	GO:0003333: amino acid transmembrane transport	3.54E-02
153	GO:0048511: rhythmic process	3.54E-02
154	GO:0010431: seed maturation	3.54E-02
155	GO:0006468: protein phosphorylation	3.57E-02
156	GO:0006355: regulation of transcription, DNA-templated	3.69E-02
157	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.78E-02
158	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.02E-02
159	GO:0009693: ethylene biosynthetic process	4.02E-02
160	GO:0071215: cellular response to abscisic acid stimulus	4.02E-02
161	GO:0010082: regulation of root meristem growth	4.02E-02
162	GO:0001944: vasculature development	4.02E-02
163	GO:0009625: response to insect	4.02E-02
164	GO:0009909: regulation of flower development	4.10E-02
165	GO:0048653: anther development	4.77E-02
166	GO:0008033: tRNA processing	4.77E-02
167	GO:0010087: phloem or xylem histogenesis	4.77E-02
168	GO:0010118: stomatal movement	4.77E-02
169	GO:0009740: gibberellic acid mediated signaling pathway	4.94E-02
170	GO:0009723: response to ethylene	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0050201: fucokinase activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
7	GO:0005201: extracellular matrix structural constituent	0.00E+00
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.57E-04
9	GO:0005227: calcium activated cation channel activity	5.57E-04
10	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.57E-04
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.57E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	5.57E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	5.57E-04
14	GO:0010313: phytochrome binding	5.57E-04
15	GO:0008395: steroid hydroxylase activity	5.57E-04
16	GO:0042736: NADH kinase activity	5.57E-04
17	GO:0000170: sphingosine hydroxylase activity	5.57E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	5.57E-04
19	GO:0043621: protein self-association	1.09E-03
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.20E-03
21	GO:0008805: carbon-monoxide oxygenase activity	1.20E-03
22	GO:0042284: sphingolipid delta-4 desaturase activity	1.20E-03
23	GO:0008493: tetracycline transporter activity	1.20E-03
24	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.20E-03
25	GO:0017118: lipoyltransferase activity	1.20E-03
26	GO:0003852: 2-isopropylmalate synthase activity	1.20E-03
27	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.20E-03
28	GO:0043425: bHLH transcription factor binding	1.20E-03
29	GO:0016413: O-acetyltransferase activity	1.85E-03
30	GO:0015035: protein disulfide oxidoreductase activity	2.73E-03
31	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.86E-03
32	GO:0001872: (1->3)-beta-D-glucan binding	2.86E-03
33	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.38E-03
34	GO:0005528: FK506 binding	3.56E-03
35	GO:0019199: transmembrane receptor protein kinase activity	3.85E-03
36	GO:0004335: galactokinase activity	3.85E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	3.85E-03
38	GO:0033612: receptor serine/threonine kinase binding	4.33E-03
39	GO:0004523: RNA-DNA hybrid ribonuclease activity	4.94E-03
40	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.94E-03
41	GO:0047134: protein-disulfide reductase activity	6.11E-03
42	GO:0080030: methyl indole-3-acetate esterase activity	6.12E-03
43	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.12E-03
44	GO:0004709: MAP kinase kinase kinase activity	6.12E-03
45	GO:0102229: amylopectin maltohydrolase activity	6.12E-03
46	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	6.12E-03
47	GO:0004871: signal transducer activity	6.74E-03
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.35E-03
49	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.40E-03
50	GO:0016832: aldehyde-lyase activity	7.40E-03
51	GO:0016161: beta-amylase activity	7.40E-03
52	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.40E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	7.67E-03
54	GO:0004518: nuclease activity	9.43E-03
55	GO:0003723: RNA binding	9.75E-03
56	GO:0009055: electron carrier activity	1.01E-02
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.01E-02
58	GO:0016759: cellulose synthase activity	1.07E-02
59	GO:0003951: NAD+ kinase activity	1.17E-02
60	GO:0008173: RNA methyltransferase activity	1.17E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	1.21E-02
62	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.33E-02
63	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.33E-02
64	GO:0102483: scopolin beta-glucosidase activity	1.51E-02
65	GO:0008047: enzyme activator activity	1.68E-02
66	GO:0004805: trehalose-phosphatase activity	1.68E-02
67	GO:0030234: enzyme regulator activity	1.68E-02
68	GO:0052689: carboxylic ester hydrolase activity	1.89E-02
69	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.91E-02
70	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.05E-02
71	GO:0004674: protein serine/threonine kinase activity	2.05E-02
72	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.22E-02
73	GO:0003725: double-stranded RNA binding	2.24E-02
74	GO:0008422: beta-glucosidase activity	2.33E-02
75	GO:0008146: sulfotransferase activity	2.65E-02
76	GO:0003712: transcription cofactor activity	2.65E-02
77	GO:0004190: aspartic-type endopeptidase activity	2.65E-02
78	GO:0031418: L-ascorbic acid binding	3.08E-02
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.21E-02
80	GO:0004519: endonuclease activity	3.28E-02
81	GO:0005345: purine nucleobase transmembrane transporter activity	3.31E-02
82	GO:0051087: chaperone binding	3.31E-02
83	GO:0004176: ATP-dependent peptidase activity	3.54E-02
84	GO:0003964: RNA-directed DNA polymerase activity	3.54E-02
85	GO:0008408: 3'-5' exonuclease activity	3.54E-02
86	GO:0010333: terpene synthase activity	3.54E-02
87	GO:0016298: lipase activity	3.83E-02
88	GO:0008168: methyltransferase activity	3.99E-02
89	GO:0005515: protein binding	4.04E-02
90	GO:0008514: organic anion transmembrane transporter activity	4.26E-02
91	GO:0003727: single-stranded RNA binding	4.26E-02
92	GO:0016874: ligase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.20E-03
2	GO:0031357: integral component of chloroplast inner membrane	1.20E-03
3	GO:0009528: plastid inner membrane	1.97E-03
4	GO:0019897: extrinsic component of plasma membrane	1.97E-03
5	GO:0030139: endocytic vesicle	1.97E-03
6	GO:0032585: multivesicular body membrane	2.86E-03
7	GO:0009544: chloroplast ATP synthase complex	3.85E-03
8	GO:0009527: plastid outer membrane	3.85E-03
9	GO:0009654: photosystem II oxygen evolving complex	3.93E-03
10	GO:0009534: chloroplast thylakoid	4.02E-03
11	GO:0009507: chloroplast	7.72E-03
12	GO:0019898: extrinsic component of membrane	8.23E-03
13	GO:0009986: cell surface	8.76E-03
14	GO:0009501: amyloplast	1.02E-02
15	GO:0010494: cytoplasmic stress granule	1.33E-02
16	GO:0009543: chloroplast thylakoid lumen	1.62E-02
17	GO:0005886: plasma membrane	1.75E-02
18	GO:0009941: chloroplast envelope	1.81E-02
19	GO:0090404: pollen tube tip	1.86E-02
20	GO:0009508: plastid chromosome	2.24E-02
21	GO:0030095: chloroplast photosystem II	2.44E-02
22	GO:0046658: anchored component of plasma membrane	3.45E-02
23	GO:0009532: plastid stroma	3.54E-02
24	GO:0015629: actin cytoskeleton	4.02E-02