co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006903: vesicle targeting	0.00E+00
2	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	1.29E-05
6	GO:0006491: N-glycan processing	1.30E-04
7	GO:0006102: isocitrate metabolic process	1.30E-04
8	GO:0030163: protein catabolic process	1.57E-04
9	GO:0019628: urate catabolic process	1.71E-04
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.71E-04
11	GO:0006144: purine nucleobase metabolic process	1.71E-04
12	GO:0006499: N-terminal protein myristoylation	3.58E-04
13	GO:0009805: coumarin biosynthetic process	3.87E-04
14	GO:0002215: defense response to nematode	3.87E-04
15	GO:0010372: positive regulation of gibberellin biosynthetic process	3.87E-04
16	GO:0080026: response to indolebutyric acid	3.87E-04
17	GO:2000072: regulation of defense response to fungus, incompatible interaction	3.87E-04
18	GO:0046939: nucleotide phosphorylation	3.87E-04
19	GO:0006568: tryptophan metabolic process	3.87E-04
20	GO:0015031: protein transport	4.48E-04
21	GO:0006099: tricarboxylic acid cycle	4.54E-04
22	GO:0009062: fatty acid catabolic process	6.32E-04
23	GO:0010359: regulation of anion channel activity	6.32E-04
24	GO:0090630: activation of GTPase activity	6.32E-04
25	GO:0006517: protein deglycosylation	6.32E-04
26	GO:0046686: response to cadmium ion	7.06E-04
27	GO:0051603: proteolysis involved in cellular protein catabolic process	8.97E-04
28	GO:0002679: respiratory burst involved in defense response	9.04E-04
29	GO:0006612: protein targeting to membrane	9.04E-04
30	GO:0006893: Golgi to plasma membrane transport	9.04E-04
31	GO:0071786: endoplasmic reticulum tubular network organization	9.04E-04
32	GO:0080024: indolebutyric acid metabolic process	9.04E-04
33	GO:0009306: protein secretion	1.02E-03
34	GO:0042147: retrograde transport, endosome to Golgi	1.10E-03
35	GO:0006221: pyrimidine nucleotide biosynthetic process	1.20E-03
36	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.20E-03
37	GO:0010222: stem vascular tissue pattern formation	1.20E-03
38	GO:0016192: vesicle-mediated transport	1.24E-03
39	GO:0009823: cytokinin catabolic process	1.52E-03
40	GO:0005513: detection of calcium ion	1.52E-03
41	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.52E-03
42	GO:0006555: methionine metabolic process	1.87E-03
43	GO:0043248: proteasome assembly	1.87E-03
44	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.87E-03
45	GO:0019509: L-methionine salvage from methylthioadenosine	2.24E-03
46	GO:0009612: response to mechanical stimulus	2.24E-03
47	GO:0048280: vesicle fusion with Golgi apparatus	2.24E-03
48	GO:0009554: megasporogenesis	2.24E-03
49	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.64E-03
50	GO:0006888: ER to Golgi vesicle-mediated transport	2.65E-03
51	GO:0009817: defense response to fungus, incompatible interaction	2.94E-03
52	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.06E-03
53	GO:0006402: mRNA catabolic process	3.06E-03
54	GO:0050821: protein stabilization	3.06E-03
55	GO:0009699: phenylpropanoid biosynthetic process	3.50E-03
56	GO:0060321: acceptance of pollen	3.50E-03
57	GO:0006367: transcription initiation from RNA polymerase II promoter	3.50E-03
58	GO:0006972: hyperosmotic response	3.50E-03
59	GO:0045087: innate immune response	3.71E-03
60	GO:0046685: response to arsenic-containing substance	3.95E-03
61	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.44E-03
62	GO:0006896: Golgi to vacuole transport	4.93E-03
63	GO:0009688: abscisic acid biosynthetic process	4.93E-03
64	GO:0043069: negative regulation of programmed cell death	4.93E-03
65	GO:0043085: positive regulation of catalytic activity	5.45E-03
66	GO:0006790: sulfur compound metabolic process	5.98E-03
67	GO:0016925: protein sumoylation	5.98E-03
68	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.98E-03
69	GO:0009846: pollen germination	5.99E-03
70	GO:0055046: microgametogenesis	6.54E-03
71	GO:0034605: cellular response to heat	7.11E-03
72	GO:0007031: peroxisome organization	7.69E-03
73	GO:0007030: Golgi organization	7.69E-03
74	GO:0010167: response to nitrate	7.69E-03
75	GO:0046854: phosphatidylinositol phosphorylation	7.69E-03
76	GO:0006886: intracellular protein transport	7.94E-03
77	GO:0009626: plant-type hypersensitive response	8.11E-03
78	GO:0000162: tryptophan biosynthetic process	8.30E-03
79	GO:0010187: negative regulation of seed germination	8.92E-03
80	GO:0006406: mRNA export from nucleus	8.92E-03
81	GO:0015992: proton transport	1.02E-02
82	GO:0030433: ubiquitin-dependent ERAD pathway	1.09E-02
83	GO:0019748: secondary metabolic process	1.09E-02
84	GO:0009651: response to salt stress	1.12E-02
85	GO:0010227: floral organ abscission	1.16E-02
86	GO:0009561: megagametogenesis	1.23E-02
87	GO:0006662: glycerol ether metabolic process	1.45E-02
88	GO:0006623: protein targeting to vacuole	1.60E-02
89	GO:0009851: auxin biosynthetic process	1.60E-02
90	GO:0006891: intra-Golgi vesicle-mediated transport	1.68E-02
91	GO:0006635: fatty acid beta-oxidation	1.68E-02
92	GO:0031047: gene silencing by RNA	1.76E-02
93	GO:0009630: gravitropism	1.76E-02
94	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.78E-02
95	GO:0006914: autophagy	1.93E-02
96	GO:0006904: vesicle docking involved in exocytosis	2.01E-02
97	GO:0016579: protein deubiquitination	2.10E-02
98	GO:0009816: defense response to bacterium, incompatible interaction	2.27E-02
99	GO:0055114: oxidation-reduction process	2.34E-02
100	GO:0006950: response to stress	2.45E-02
101	GO:0048767: root hair elongation	2.73E-02
102	GO:0009407: toxin catabolic process	2.83E-02
103	GO:0010119: regulation of stomatal movement	2.93E-02
104	GO:0000724: double-strand break repair via homologous recombination	3.02E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	3.12E-02
106	GO:0034599: cellular response to oxidative stress	3.22E-02
107	GO:0006887: exocytosis	3.53E-02
108	GO:0051707: response to other organism	3.74E-02
109	GO:0000209: protein polyubiquitination	3.85E-02
110	GO:0009636: response to toxic substance	4.06E-02
111	GO:0031347: regulation of defense response	4.29E-02
112	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.29E-02
113	GO:0006629: lipid metabolic process	4.49E-02
114	GO:0006486: protein glycosylation	4.62E-02
115	GO:0042742: defense response to bacterium	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0004846: urate oxidase activity	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.06E-06
5	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.21E-05
6	GO:0019786: Atg8-specific protease activity	1.71E-04
7	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.71E-04
8	GO:0048037: cofactor binding	1.71E-04
9	GO:0004127: cytidylate kinase activity	3.87E-04
10	GO:0008805: carbon-monoxide oxygenase activity	3.87E-04
11	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.87E-04
12	GO:0019779: Atg8 activating enzyme activity	3.87E-04
13	GO:0004640: phosphoribosylanthranilate isomerase activity	3.87E-04
14	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.87E-04
15	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.87E-04
16	GO:0010297: heteropolysaccharide binding	3.87E-04
17	GO:0051879: Hsp90 protein binding	3.87E-04
18	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.87E-04
19	GO:0004190: aspartic-type endopeptidase activity	5.37E-04
20	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.32E-04
21	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.32E-04
22	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	9.04E-04
23	GO:0019201: nucleotide kinase activity	9.04E-04
24	GO:0009041: uridylate kinase activity	9.04E-04
25	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.04E-04
26	GO:0008233: peptidase activity	1.12E-03
27	GO:0070628: proteasome binding	1.20E-03
28	GO:0008022: protein C-terminus binding	1.20E-03
29	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.20E-03
30	GO:0004031: aldehyde oxidase activity	1.20E-03
31	GO:0050302: indole-3-acetaldehyde oxidase activity	1.20E-03
32	GO:0019776: Atg8 ligase activity	1.20E-03
33	GO:0008374: O-acyltransferase activity	1.52E-03
34	GO:0019139: cytokinin dehydrogenase activity	1.52E-03
35	GO:0031386: protein tag	1.52E-03
36	GO:0004518: nuclease activity	1.68E-03
37	GO:0031593: polyubiquitin binding	1.87E-03
38	GO:0036402: proteasome-activating ATPase activity	1.87E-03
39	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.24E-03
40	GO:0004017: adenylate kinase activity	2.24E-03
41	GO:0004656: procollagen-proline 4-dioxygenase activity	2.24E-03
42	GO:0004559: alpha-mannosidase activity	2.24E-03
43	GO:0008320: protein transmembrane transporter activity	2.64E-03
44	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.39E-03
45	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.50E-03
46	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.71E-03
47	GO:0004743: pyruvate kinase activity	4.44E-03
48	GO:0030955: potassium ion binding	4.44E-03
49	GO:0008047: enzyme activator activity	4.93E-03
50	GO:0005198: structural molecule activity	5.37E-03
51	GO:0050660: flavin adenine dinucleotide binding	5.55E-03
52	GO:0008131: primary amine oxidase activity	7.11E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.11E-03
54	GO:0017025: TBP-class protein binding	7.69E-03
55	GO:0043130: ubiquitin binding	8.92E-03
56	GO:0031418: L-ascorbic acid binding	8.92E-03
57	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.02E-02
58	GO:0047134: protein-disulfide reductase activity	1.30E-02
59	GO:0008565: protein transporter activity	1.38E-02
60	GO:0004791: thioredoxin-disulfide reductase activity	1.52E-02
61	GO:0004872: receptor activity	1.60E-02
62	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.68E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.84E-02
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.01E-02
65	GO:0008237: metallopeptidase activity	2.01E-02
66	GO:0051213: dioxygenase activity	2.18E-02
67	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.36E-02
68	GO:0000287: magnesium ion binding	2.42E-02
69	GO:0004683: calmodulin-dependent protein kinase activity	2.45E-02
70	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.45E-02
71	GO:0043531: ADP binding	2.70E-02
72	GO:0005096: GTPase activator activity	2.73E-02
73	GO:0003746: translation elongation factor activity	3.12E-02
74	GO:0061630: ubiquitin protein ligase activity	3.21E-02
75	GO:0000149: SNARE binding	3.33E-02
76	GO:0004364: glutathione transferase activity	3.64E-02
77	GO:0005484: SNAP receptor activity	3.74E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	3.96E-02
79	GO:0004722: protein serine/threonine phosphatase activity	4.00E-02
80	GO:0051287: NAD binding	4.29E-02
81	GO:0016787: hydrolase activity	4.42E-02
82	GO:0005509: calcium ion binding	4.47E-02
83	GO:0016298: lipase activity	4.74E-02
84	GO:0009055: electron carrier activity	4.81E-02
85	GO:0031625: ubiquitin protein ligase binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.87E-10
2	GO:0005839: proteasome core complex	1.57E-08
3	GO:0005829: cytosol	1.01E-04
4	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.30E-04
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.62E-04
6	GO:0009510: plasmodesmatal desmotubule	1.71E-04
7	GO:0016442: RISC complex	1.71E-04
8	GO:0008541: proteasome regulatory particle, lid subcomplex	3.25E-04
9	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.32E-04
10	GO:0030132: clathrin coat of coated pit	6.32E-04
11	GO:0005802: trans-Golgi network	6.55E-04
12	GO:0005775: vacuolar lumen	9.04E-04
13	GO:0071782: endoplasmic reticulum tubular network	9.04E-04
14	GO:0005783: endoplasmic reticulum	9.41E-04
15	GO:0030660: Golgi-associated vesicle membrane	1.20E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.20E-03
17	GO:0005776: autophagosome	1.20E-03
18	GO:0030904: retromer complex	1.87E-03
19	GO:0030140: trans-Golgi network transport vesicle	1.87E-03
20	GO:0032580: Golgi cisterna membrane	1.90E-03
21	GO:0005794: Golgi apparatus	2.23E-03
22	GO:0030173: integral component of Golgi membrane	2.24E-03
23	GO:0031597: cytosolic proteasome complex	2.24E-03
24	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.64E-03
25	GO:0031595: nuclear proteasome complex	2.64E-03
26	GO:0000421: autophagosome membrane	3.06E-03
27	GO:0031982: vesicle	3.06E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	3.06E-03
29	GO:0005768: endosome	3.27E-03
30	GO:0031901: early endosome membrane	3.95E-03
31	GO:0031090: organelle membrane	3.95E-03
32	GO:0010494: cytoplasmic stress granule	3.95E-03
33	GO:0031902: late endosome membrane	4.41E-03
34	GO:0008540: proteasome regulatory particle, base subcomplex	4.44E-03
35	GO:0005765: lysosomal membrane	5.45E-03
36	GO:0048471: perinuclear region of cytoplasm	5.45E-03
37	GO:0005789: endoplasmic reticulum membrane	8.25E-03
38	GO:0031410: cytoplasmic vesicle	1.09E-02
39	GO:0005770: late endosome	1.45E-02
40	GO:0005737: cytoplasm	1.51E-02
41	GO:0009504: cell plate	1.60E-02
42	GO:0016592: mediator complex	1.76E-02
43	GO:0000145: exocyst	1.76E-02
44	GO:0000932: P-body	2.18E-02
45	GO:0005788: endoplasmic reticulum lumen	2.27E-02
46	GO:0019005: SCF ubiquitin ligase complex	2.64E-02
47	GO:0000325: plant-type vacuole	2.93E-02
48	GO:0031201: SNARE complex	3.53E-02
49	GO:0005856: cytoskeleton	4.06E-02
50	GO:0005618: cell wall	4.15E-02
51	GO:0005635: nuclear envelope	4.85E-02