co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046680: response to DDT	0.00E+00
2	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:0006903: vesicle targeting	0.00E+00
8	GO:0006216: cytidine catabolic process	0.00E+00
9	GO:0006858: extracellular transport	0.00E+00
10	GO:0002084: protein depalmitoylation	0.00E+00
11	GO:0010102: lateral root morphogenesis	3.04E-05
12	GO:0046686: response to cadmium ion	3.12E-05
13	GO:0046283: anthocyanin-containing compound metabolic process	6.05E-05
14	GO:0006564: L-serine biosynthetic process	6.05E-05
15	GO:0006102: isocitrate metabolic process	2.06E-04
16	GO:0042964: thioredoxin reduction	2.32E-04
17	GO:0006680: glucosylceramide catabolic process	2.32E-04
18	GO:1900384: regulation of flavonol biosynthetic process	2.32E-04
19	GO:0006144: purine nucleobase metabolic process	2.32E-04
20	GO:0019628: urate catabolic process	2.32E-04
21	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.32E-04
22	GO:0000032: cell wall mannoprotein biosynthetic process	2.32E-04
23	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.67E-04
24	GO:1901703: protein localization involved in auxin polar transport	5.15E-04
25	GO:0080026: response to indolebutyric acid	5.15E-04
26	GO:0042814: monopolar cell growth	5.15E-04
27	GO:0015709: thiosulfate transport	5.15E-04
28	GO:0071422: succinate transmembrane transport	5.15E-04
29	GO:0046939: nucleotide phosphorylation	5.15E-04
30	GO:0009805: coumarin biosynthetic process	5.15E-04
31	GO:0006672: ceramide metabolic process	5.15E-04
32	GO:0010372: positive regulation of gibberellin biosynthetic process	5.15E-04
33	GO:0006807: nitrogen compound metabolic process	6.45E-04
34	GO:0006099: tricarboxylic acid cycle	7.81E-04
35	GO:0007031: peroxisome organization	8.11E-04
36	GO:0009062: fatty acid catabolic process	8.37E-04
37	GO:0055074: calcium ion homeostasis	8.37E-04
38	GO:0010359: regulation of anion channel activity	8.37E-04
39	GO:0090630: activation of GTPase activity	8.37E-04
40	GO:0072661: protein targeting to plasma membrane	8.37E-04
41	GO:0006517: protein deglycosylation	8.37E-04
42	GO:0010272: response to silver ion	8.37E-04
43	GO:0033591: response to L-ascorbic acid	8.37E-04
44	GO:0000162: tryptophan biosynthetic process	9.01E-04
45	GO:0006887: exocytosis	9.15E-04
46	GO:0080024: indolebutyric acid metabolic process	1.19E-03
47	GO:0009298: GDP-mannose biosynthetic process	1.19E-03
48	GO:0015729: oxaloacetate transport	1.19E-03
49	GO:0006612: protein targeting to membrane	1.19E-03
50	GO:0006893: Golgi to plasma membrane transport	1.19E-03
51	GO:0010227: floral organ abscission	1.42E-03
52	GO:0009306: protein secretion	1.55E-03
53	GO:0010188: response to microbial phytotoxin	1.59E-03
54	GO:0006878: cellular copper ion homeostasis	1.59E-03
55	GO:0010222: stem vascular tissue pattern formation	1.59E-03
56	GO:0010363: regulation of plant-type hypersensitive response	1.59E-03
57	GO:0000919: cell plate assembly	1.59E-03
58	GO:0006096: glycolytic process	1.81E-03
59	GO:0006662: glycerol ether metabolic process	1.95E-03
60	GO:0071423: malate transmembrane transport	2.03E-03
61	GO:0009823: cytokinin catabolic process	2.03E-03
62	GO:0005513: detection of calcium ion	2.03E-03
63	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.03E-03
64	GO:0006465: signal peptide processing	2.03E-03
65	GO:0009851: auxin biosynthetic process	2.24E-03
66	GO:0016192: vesicle-mediated transport	2.39E-03
67	GO:0009228: thiamine biosynthetic process	2.50E-03
68	GO:0035435: phosphate ion transmembrane transport	2.50E-03
69	GO:0009972: cytidine deamination	2.50E-03
70	GO:0006555: methionine metabolic process	2.50E-03
71	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.50E-03
72	GO:0060918: auxin transport	2.50E-03
73	GO:1901657: glycosyl compound metabolic process	2.73E-03
74	GO:0030163: protein catabolic process	2.73E-03
75	GO:0009082: branched-chain amino acid biosynthetic process	3.00E-03
76	GO:0009099: valine biosynthetic process	3.00E-03
77	GO:0009554: megasporogenesis	3.00E-03
78	GO:0019509: L-methionine salvage from methylthioadenosine	3.00E-03
79	GO:0009612: response to mechanical stimulus	3.00E-03
80	GO:0006904: vesicle docking involved in exocytosis	3.08E-03
81	GO:0009058: biosynthetic process	3.26E-03
82	GO:0009615: response to virus	3.46E-03
83	GO:0008272: sulfate transport	3.54E-03
84	GO:0050829: defense response to Gram-negative bacterium	3.54E-03
85	GO:0071669: plant-type cell wall organization or biogenesis	3.54E-03
86	GO:0009751: response to salicylic acid	3.92E-03
87	GO:0015031: protein transport	3.95E-03
88	GO:0006888: ER to Golgi vesicle-mediated transport	4.07E-03
89	GO:0006491: N-glycan processing	4.10E-03
90	GO:0006402: mRNA catabolic process	4.10E-03
91	GO:0010120: camalexin biosynthetic process	4.70E-03
92	GO:0009097: isoleucine biosynthetic process	4.70E-03
93	GO:0010204: defense response signaling pathway, resistance gene-independent	4.70E-03
94	GO:0006972: hyperosmotic response	4.70E-03
95	GO:0009699: phenylpropanoid biosynthetic process	4.70E-03
96	GO:0006002: fructose 6-phosphate metabolic process	4.70E-03
97	GO:0060321: acceptance of pollen	4.70E-03
98	GO:0019430: removal of superoxide radicals	4.70E-03
99	GO:0007186: G-protein coupled receptor signaling pathway	4.70E-03
100	GO:0006499: N-terminal protein myristoylation	4.97E-03
101	GO:0046685: response to arsenic-containing substance	5.32E-03
102	GO:0009821: alkaloid biosynthetic process	5.32E-03
103	GO:0034599: cellular response to oxidative stress	5.97E-03
104	GO:0043067: regulation of programmed cell death	5.97E-03
105	GO:0009098: leucine biosynthetic process	5.97E-03
106	GO:0006032: chitin catabolic process	6.65E-03
107	GO:0009688: abscisic acid biosynthetic process	6.65E-03
108	GO:0043069: negative regulation of programmed cell death	6.65E-03
109	GO:0043085: positive regulation of catalytic activity	7.35E-03
110	GO:0000272: polysaccharide catabolic process	7.35E-03
111	GO:0009682: induced systemic resistance	7.35E-03
112	GO:0052544: defense response by callose deposition in cell wall	7.35E-03
113	GO:0000209: protein polyubiquitination	7.65E-03
114	GO:0016925: protein sumoylation	8.08E-03
115	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.08E-03
116	GO:0006790: sulfur compound metabolic process	8.08E-03
117	GO:0009636: response to toxic substance	8.27E-03
118	GO:0042742: defense response to bacterium	8.43E-03
119	GO:0055046: microgametogenesis	8.84E-03
120	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	8.84E-03
121	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.91E-03
122	GO:0009846: pollen germination	9.24E-03
123	GO:0034605: cellular response to heat	9.62E-03
124	GO:0009651: response to salt stress	9.68E-03
125	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-02
126	GO:0046854: phosphatidylinositol phosphorylation	1.04E-02
127	GO:0010053: root epidermal cell differentiation	1.04E-02
128	GO:0007030: Golgi organization	1.04E-02
129	GO:0010167: response to nitrate	1.04E-02
130	GO:0019853: L-ascorbic acid biosynthetic process	1.04E-02
131	GO:0006417: regulation of translation	1.10E-02
132	GO:0009626: plant-type hypersensitive response	1.25E-02
133	GO:0009620: response to fungus	1.29E-02
134	GO:0006874: cellular calcium ion homeostasis	1.30E-02
135	GO:0045454: cell redox homeostasis	1.32E-02
136	GO:0006886: intracellular protein transport	1.38E-02
137	GO:0016998: cell wall macromolecule catabolic process	1.39E-02
138	GO:0015992: proton transport	1.39E-02
139	GO:0019748: secondary metabolic process	1.48E-02
140	GO:0009814: defense response, incompatible interaction	1.48E-02
141	GO:0006511: ubiquitin-dependent protein catabolic process	1.52E-02
142	GO:0009561: megagametogenesis	1.67E-02
143	GO:0045489: pectin biosynthetic process	1.97E-02
144	GO:0048544: recognition of pollen	2.07E-02
145	GO:0009646: response to absence of light	2.07E-02
146	GO:0006635: fatty acid beta-oxidation	2.29E-02
147	GO:0032502: developmental process	2.40E-02
148	GO:0009630: gravitropism	2.40E-02
149	GO:0031047: gene silencing by RNA	2.40E-02
150	GO:0010150: leaf senescence	2.46E-02
151	GO:0045490: pectin catabolic process	2.46E-02
152	GO:0006464: cellular protein modification process	2.62E-02
153	GO:0006914: autophagy	2.62E-02
154	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.75E-02
155	GO:0009617: response to bacterium	2.93E-02
156	GO:0006906: vesicle fusion	3.22E-02
157	GO:0009627: systemic acquired resistance	3.22E-02
158	GO:0006974: cellular response to DNA damage stimulus	3.22E-02
159	GO:0016049: cell growth	3.47E-02
160	GO:0008219: cell death	3.59E-02
161	GO:0048767: root hair elongation	3.72E-02
162	GO:0009407: toxin catabolic process	3.85E-02
163	GO:0055114: oxidation-reduction process	3.97E-02
164	GO:0010043: response to zinc ion	3.98E-02
165	GO:0007568: aging	3.98E-02
166	GO:0010119: regulation of stomatal movement	3.98E-02
167	GO:0009860: pollen tube growth	4.08E-02
168	GO:0045087: innate immune response	4.25E-02
169	GO:0006839: mitochondrial transport	4.67E-02
170	GO:0006897: endocytosis	4.81E-02
171	GO:0006631: fatty acid metabolic process	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0047844: deoxycytidine deaminase activity	0.00E+00
2	GO:0004846: urate oxidase activity	0.00E+00
3	GO:0001729: ceramide kinase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
8	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
9	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.08E-05
10	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	8.88E-05
11	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	8.88E-05
12	GO:0004791: thioredoxin-disulfide reductase activity	1.96E-04
13	GO:0048037: cofactor binding	2.32E-04
14	GO:0004476: mannose-6-phosphate isomerase activity	2.32E-04
15	GO:0004348: glucosylceramidase activity	2.32E-04
16	GO:0019786: Atg8-specific protease activity	2.32E-04
17	GO:0004649: poly(ADP-ribose) glycohydrolase activity	2.32E-04
18	GO:0016229: steroid dehydrogenase activity	2.32E-04
19	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.32E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.32E-04
21	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.32E-04
22	GO:0070401: NADP+ binding	2.32E-04
23	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.32E-04
24	GO:0030955: potassium ion binding	3.67E-04
25	GO:0004743: pyruvate kinase activity	3.67E-04
26	GO:0019779: Atg8 activating enzyme activity	5.15E-04
27	GO:0019172: glyoxalase III activity	5.15E-04
28	GO:0015117: thiosulfate transmembrane transporter activity	5.15E-04
29	GO:1901677: phosphate transmembrane transporter activity	5.15E-04
30	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.15E-04
31	GO:0010297: heteropolysaccharide binding	5.15E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	5.15E-04
33	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.15E-04
34	GO:0015141: succinate transmembrane transporter activity	8.37E-04
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.37E-04
36	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.37E-04
37	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.37E-04
38	GO:0052656: L-isoleucine transaminase activity	1.19E-03
39	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.19E-03
40	GO:0052654: L-leucine transaminase activity	1.19E-03
41	GO:0017077: oxidative phosphorylation uncoupler activity	1.19E-03
42	GO:0052655: L-valine transaminase activity	1.19E-03
43	GO:0019201: nucleotide kinase activity	1.19E-03
44	GO:0015131: oxaloacetate transmembrane transporter activity	1.19E-03
45	GO:0004298: threonine-type endopeptidase activity	1.20E-03
46	GO:0051287: NAD binding	1.28E-03
47	GO:0000287: magnesium ion binding	1.55E-03
48	GO:0004031: aldehyde oxidase activity	1.59E-03
49	GO:0050302: indole-3-acetaldehyde oxidase activity	1.59E-03
50	GO:0019776: Atg8 ligase activity	1.59E-03
51	GO:0004930: G-protein coupled receptor activity	1.59E-03
52	GO:0004834: tryptophan synthase activity	1.59E-03
53	GO:0070628: proteasome binding	1.59E-03
54	GO:0004084: branched-chain-amino-acid transaminase activity	1.59E-03
55	GO:0047134: protein-disulfide reductase activity	1.67E-03
56	GO:0031386: protein tag	2.03E-03
57	GO:0019139: cytokinin dehydrogenase activity	2.03E-03
58	GO:0035252: UDP-xylosyltransferase activity	2.50E-03
59	GO:0008474: palmitoyl-(protein) hydrolase activity	2.50E-03
60	GO:0004518: nuclease activity	2.56E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.73E-03
62	GO:0004126: cytidine deaminase activity	3.00E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.00E-03
64	GO:0004017: adenylate kinase activity	3.00E-03
65	GO:0008320: protein transmembrane transporter activity	3.54E-03
66	GO:0003872: 6-phosphofructokinase activity	3.54E-03
67	GO:0015140: malate transmembrane transporter activity	3.54E-03
68	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.07E-03
69	GO:0102483: scopolin beta-glucosidase activity	4.07E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	4.10E-03
71	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.10E-03
72	GO:0003951: NAD+ kinase activity	4.70E-03
73	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.21E-03
74	GO:0016844: strictosidine synthase activity	5.97E-03
75	GO:0008422: beta-glucosidase activity	6.23E-03
76	GO:0004568: chitinase activity	6.65E-03
77	GO:0008047: enzyme activator activity	6.65E-03
78	GO:0005509: calcium ion binding	7.32E-03
79	GO:0015116: sulfate transmembrane transporter activity	8.08E-03
80	GO:0005198: structural molecule activity	8.27E-03
81	GO:0031072: heat shock protein binding	8.84E-03
82	GO:0008131: primary amine oxidase activity	9.62E-03
83	GO:0031624: ubiquitin conjugating enzyme binding	9.62E-03
84	GO:0004970: ionotropic glutamate receptor activity	1.04E-02
85	GO:0005217: intracellular ligand-gated ion channel activity	1.04E-02
86	GO:0008061: chitin binding	1.04E-02
87	GO:0061630: ubiquitin protein ligase activity	1.12E-02
88	GO:0051082: unfolded protein binding	1.42E-02
89	GO:0015035: protein disulfide oxidoreductase activity	1.46E-02
90	GO:0005507: copper ion binding	1.63E-02
91	GO:0030170: pyridoxal phosphate binding	1.97E-02
92	GO:0005199: structural constituent of cell wall	1.97E-02
93	GO:0001085: RNA polymerase II transcription factor binding	1.97E-02
94	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.74E-02
95	GO:0008237: metallopeptidase activity	2.74E-02
96	GO:0016597: amino acid binding	2.86E-02
97	GO:0051213: dioxygenase activity	2.98E-02
98	GO:0003824: catalytic activity	3.16E-02
99	GO:0008375: acetylglucosaminyltransferase activity	3.22E-02
100	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.22E-02
101	GO:0004683: calmodulin-dependent protein kinase activity	3.34E-02
102	GO:0005096: GTPase activator activity	3.72E-02
103	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.98E-02
104	GO:0043531: ADP binding	4.15E-02
105	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.25E-02
106	GO:0003746: translation elongation factor activity	4.25E-02
107	GO:0050660: flavin adenine dinucleotide binding	4.38E-02
108	GO:0003993: acid phosphatase activity	4.39E-02
109	GO:0000149: SNARE binding	4.53E-02
110	GO:0008233: peptidase activity	4.61E-02
111	GO:0042393: histone binding	4.67E-02
112	GO:0003729: mRNA binding	4.89E-02
113	GO:0004364: glutathione transferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	4.18E-06
2	GO:0005839: proteasome core complex	8.49E-05
3	GO:0000502: proteasome complex	2.00E-04
4	GO:0016442: RISC complex	2.32E-04
5	GO:0031901: early endosome membrane	3.09E-04
6	GO:0005886: plasma membrane	3.83E-04
7	GO:0030132: clathrin coat of coated pit	8.37E-04
8	GO:0009530: primary cell wall	8.37E-04
9	GO:0030130: clathrin coat of trans-Golgi network vesicle	8.37E-04
10	GO:0070062: extracellular exosome	1.19E-03
11	GO:0005775: vacuolar lumen	1.19E-03
12	GO:0005776: autophagosome	1.59E-03
13	GO:0005768: endosome	1.99E-03
14	GO:0005945: 6-phosphofructokinase complex	2.03E-03
15	GO:0009504: cell plate	2.24E-03
16	GO:0000145: exocyst	2.56E-03
17	GO:0030173: integral component of Golgi membrane	3.00E-03
18	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.54E-03
19	GO:0005794: Golgi apparatus	3.96E-03
20	GO:0000421: autophagosome membrane	4.10E-03
21	GO:0031982: vesicle	4.10E-03
22	GO:0019773: proteasome core complex, alpha-subunit complex	4.70E-03
23	GO:0031090: organelle membrane	5.32E-03
24	GO:0010494: cytoplasmic stress granule	5.32E-03
25	GO:0005802: trans-Golgi network	5.60E-03
26	GO:0048471: perinuclear region of cytoplasm	7.35E-03
27	GO:0090404: pollen tube tip	7.35E-03
28	GO:0008541: proteasome regulatory particle, lid subcomplex	7.35E-03
29	GO:0009506: plasmodesma	7.90E-03
30	GO:0005856: cytoskeleton	8.27E-03
31	GO:0005737: cytoplasm	8.85E-03
32	GO:0005773: vacuole	1.02E-02
33	GO:0005777: peroxisome	1.18E-02
34	GO:0005618: cell wall	1.38E-02
35	GO:0031410: cytoplasmic vesicle	1.48E-02
36	GO:0009524: phragmoplast	1.87E-02
37	GO:0005783: endoplasmic reticulum	1.91E-02
38	GO:0016592: mediator complex	2.40E-02
39	GO:0071944: cell periphery	2.51E-02
40	GO:0032580: Golgi cisterna membrane	2.62E-02
41	GO:0005778: peroxisomal membrane	2.74E-02
42	GO:0000932: P-body	2.98E-02
43	GO:0005788: endoplasmic reticulum lumen	3.10E-02
44	GO:0005667: transcription factor complex	3.22E-02
45	GO:0000151: ubiquitin ligase complex	3.59E-02
46	GO:0031201: SNARE complex	4.81E-02