GO Enrichment Analysis of Co-expressed Genes with
AT3G02890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 2 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0006438: valyl-tRNA aminoacylation | 2.20E-04 |
| 5 | GO:0070509: calcium ion import | 2.20E-04 |
| 6 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.00E-04 |
| 7 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.90E-04 |
| 8 | GO:0006650: glycerophospholipid metabolic process | 4.90E-04 |
| 9 | GO:0061062: regulation of nematode larval development | 4.90E-04 |
| 10 | GO:0001736: establishment of planar polarity | 4.90E-04 |
| 11 | GO:0080009: mRNA methylation | 4.90E-04 |
| 12 | GO:0009733: response to auxin | 7.64E-04 |
| 13 | GO:0046168: glycerol-3-phosphate catabolic process | 7.98E-04 |
| 14 | GO:0010226: response to lithium ion | 7.98E-04 |
| 15 | GO:0016045: detection of bacterium | 7.98E-04 |
| 16 | GO:0030029: actin filament-based process | 7.98E-04 |
| 17 | GO:0045910: negative regulation of DNA recombination | 7.98E-04 |
| 18 | GO:0051017: actin filament bundle assembly | 9.27E-04 |
| 19 | GO:0006418: tRNA aminoacylation for protein translation | 1.02E-03 |
| 20 | GO:0051639: actin filament network formation | 1.14E-03 |
| 21 | GO:0007276: gamete generation | 1.14E-03 |
| 22 | GO:0006072: glycerol-3-phosphate metabolic process | 1.14E-03 |
| 23 | GO:0045017: glycerolipid biosynthetic process | 1.14E-03 |
| 24 | GO:0009734: auxin-activated signaling pathway | 1.43E-03 |
| 25 | GO:0051764: actin crosslink formation | 1.51E-03 |
| 26 | GO:0006021: inositol biosynthetic process | 1.51E-03 |
| 27 | GO:0009958: positive gravitropism | 1.81E-03 |
| 28 | GO:0009624: response to nematode | 2.09E-03 |
| 29 | GO:0016554: cytidine to uridine editing | 2.38E-03 |
| 30 | GO:0048528: post-embryonic root development | 3.36E-03 |
| 31 | GO:1900056: negative regulation of leaf senescence | 3.36E-03 |
| 32 | GO:0010098: suspensor development | 3.36E-03 |
| 33 | GO:0015693: magnesium ion transport | 3.36E-03 |
| 34 | GO:0009610: response to symbiotic fungus | 3.36E-03 |
| 35 | GO:0015995: chlorophyll biosynthetic process | 3.78E-03 |
| 36 | GO:0051276: chromosome organization | 3.90E-03 |
| 37 | GO:0046620: regulation of organ growth | 3.90E-03 |
| 38 | GO:0010492: maintenance of shoot apical meristem identity | 3.90E-03 |
| 39 | GO:0000105: histidine biosynthetic process | 3.90E-03 |
| 40 | GO:0040008: regulation of growth | 3.94E-03 |
| 41 | GO:0010311: lateral root formation | 4.40E-03 |
| 42 | GO:0000160: phosphorelay signal transduction system | 4.40E-03 |
| 43 | GO:0032544: plastid translation | 4.47E-03 |
| 44 | GO:0000373: Group II intron splicing | 5.06E-03 |
| 45 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.68E-03 |
| 46 | GO:1900865: chloroplast RNA modification | 5.68E-03 |
| 47 | GO:0016571: histone methylation | 5.68E-03 |
| 48 | GO:0016573: histone acetylation | 5.68E-03 |
| 49 | GO:0030001: metal ion transport | 6.04E-03 |
| 50 | GO:0048829: root cap development | 6.32E-03 |
| 51 | GO:0009641: shade avoidance | 6.32E-03 |
| 52 | GO:0006298: mismatch repair | 6.32E-03 |
| 53 | GO:0006949: syncytium formation | 6.32E-03 |
| 54 | GO:0009926: auxin polar transport | 6.83E-03 |
| 55 | GO:0008285: negative regulation of cell proliferation | 6.98E-03 |
| 56 | GO:0048765: root hair cell differentiation | 6.98E-03 |
| 57 | GO:0009658: chloroplast organization | 7.29E-03 |
| 58 | GO:0006790: sulfur compound metabolic process | 7.68E-03 |
| 59 | GO:0005983: starch catabolic process | 7.68E-03 |
| 60 | GO:0045037: protein import into chloroplast stroma | 7.68E-03 |
| 61 | GO:0010020: chloroplast fission | 9.13E-03 |
| 62 | GO:0009887: animal organ morphogenesis | 9.13E-03 |
| 63 | GO:0009266: response to temperature stimulus | 9.13E-03 |
| 64 | GO:0009736: cytokinin-activated signaling pathway | 9.22E-03 |
| 65 | GO:0070588: calcium ion transmembrane transport | 9.90E-03 |
| 66 | GO:0046854: phosphatidylinositol phosphorylation | 9.90E-03 |
| 67 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.00E-02 |
| 68 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.07E-02 |
| 69 | GO:0006833: water transport | 1.07E-02 |
| 70 | GO:0006338: chromatin remodeling | 1.15E-02 |
| 71 | GO:0007010: cytoskeleton organization | 1.15E-02 |
| 72 | GO:0045892: negative regulation of transcription, DNA-templated | 1.23E-02 |
| 73 | GO:0003333: amino acid transmembrane transport | 1.32E-02 |
| 74 | GO:0016226: iron-sulfur cluster assembly | 1.40E-02 |
| 75 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.49E-02 |
| 76 | GO:0071215: cellular response to abscisic acid stimulus | 1.49E-02 |
| 77 | GO:0010082: regulation of root meristem growth | 1.49E-02 |
| 78 | GO:0016042: lipid catabolic process | 1.52E-02 |
| 79 | GO:0005975: carbohydrate metabolic process | 1.53E-02 |
| 80 | GO:0006281: DNA repair | 1.57E-02 |
| 81 | GO:0006284: base-excision repair | 1.58E-02 |
| 82 | GO:0042127: regulation of cell proliferation | 1.58E-02 |
| 83 | GO:0070417: cellular response to cold | 1.68E-02 |
| 84 | GO:0000271: polysaccharide biosynthetic process | 1.77E-02 |
| 85 | GO:0034220: ion transmembrane transport | 1.77E-02 |
| 86 | GO:0045489: pectin biosynthetic process | 1.87E-02 |
| 87 | GO:0007018: microtubule-based movement | 1.97E-02 |
| 88 | GO:0008654: phospholipid biosynthetic process | 2.07E-02 |
| 89 | GO:0045490: pectin catabolic process | 2.28E-02 |
| 90 | GO:0032502: developmental process | 2.28E-02 |
| 91 | GO:0019760: glucosinolate metabolic process | 2.49E-02 |
| 92 | GO:0009828: plant-type cell wall loosening | 2.49E-02 |
| 93 | GO:0006310: DNA recombination | 2.49E-02 |
| 94 | GO:0006974: cellular response to DNA damage stimulus | 3.05E-02 |
| 95 | GO:0009627: systemic acquired resistance | 3.05E-02 |
| 96 | GO:0010411: xyloglucan metabolic process | 3.17E-02 |
| 97 | GO:0016311: dephosphorylation | 3.29E-02 |
| 98 | GO:0018298: protein-chromophore linkage | 3.41E-02 |
| 99 | GO:0009910: negative regulation of flower development | 3.78E-02 |
| 100 | GO:0006865: amino acid transport | 3.91E-02 |
| 101 | GO:0000724: double-strand break repair via homologous recombination | 3.91E-02 |
| 102 | GO:0016051: carbohydrate biosynthetic process | 4.03E-02 |
| 103 | GO:0048366: leaf development | 4.14E-02 |
| 104 | GO:0006839: mitochondrial transport | 4.43E-02 |
| 105 | GO:0051707: response to other organism | 4.83E-02 |
| 106 | GO:0008283: cell proliferation | 4.83E-02 |
| 107 | GO:0042546: cell wall biogenesis | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 2 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 3 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 2.20E-04 |
| 4 | GO:0005227: calcium activated cation channel activity | 2.20E-04 |
| 5 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.20E-04 |
| 6 | GO:0004832: valine-tRNA ligase activity | 2.20E-04 |
| 7 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.20E-04 |
| 8 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.90E-04 |
| 9 | GO:0004817: cysteine-tRNA ligase activity | 4.90E-04 |
| 10 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.90E-04 |
| 11 | GO:0004109: coproporphyrinogen oxidase activity | 4.90E-04 |
| 12 | GO:0008805: carbon-monoxide oxygenase activity | 4.90E-04 |
| 13 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.90E-04 |
| 14 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.90E-04 |
| 15 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.90E-04 |
| 16 | GO:0019156: isoamylase activity | 4.90E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 4.90E-04 |
| 18 | GO:0003913: DNA photolyase activity | 7.98E-04 |
| 19 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.98E-04 |
| 20 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 7.98E-04 |
| 21 | GO:0001872: (1->3)-beta-D-glucan binding | 1.14E-03 |
| 22 | GO:0030570: pectate lyase activity | 1.33E-03 |
| 23 | GO:0010328: auxin influx transmembrane transporter activity | 1.51E-03 |
| 24 | GO:0010011: auxin binding | 1.51E-03 |
| 25 | GO:0004812: aminoacyl-tRNA ligase activity | 1.56E-03 |
| 26 | GO:0005471: ATP:ADP antiporter activity | 1.93E-03 |
| 27 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.93E-03 |
| 28 | GO:0052689: carboxylic ester hydrolase activity | 2.31E-03 |
| 29 | GO:0043140: ATP-dependent 3'-5' DNA helicase activity | 2.38E-03 |
| 30 | GO:0004556: alpha-amylase activity | 2.38E-03 |
| 31 | GO:0009378: four-way junction helicase activity | 2.38E-03 |
| 32 | GO:0030983: mismatched DNA binding | 2.38E-03 |
| 33 | GO:0000156: phosphorelay response regulator activity | 2.54E-03 |
| 34 | GO:0051015: actin filament binding | 2.54E-03 |
| 35 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.86E-03 |
| 36 | GO:0043138: 3'-5' DNA helicase activity | 2.86E-03 |
| 37 | GO:0009881: photoreceptor activity | 3.36E-03 |
| 38 | GO:0003723: RNA binding | 3.51E-03 |
| 39 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.47E-03 |
| 40 | GO:0016788: hydrolase activity, acting on ester bonds | 7.46E-03 |
| 41 | GO:0004565: beta-galactosidase activity | 8.39E-03 |
| 42 | GO:0003725: double-stranded RNA binding | 8.39E-03 |
| 43 | GO:0015095: magnesium ion transmembrane transporter activity | 8.39E-03 |
| 44 | GO:0005262: calcium channel activity | 8.39E-03 |
| 45 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.13E-03 |
| 46 | GO:0008061: chitin binding | 9.90E-03 |
| 47 | GO:0003712: transcription cofactor activity | 9.90E-03 |
| 48 | GO:0003777: microtubule motor activity | 1.02E-02 |
| 49 | GO:0003779: actin binding | 1.28E-02 |
| 50 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.30E-02 |
| 51 | GO:0004707: MAP kinase activity | 1.32E-02 |
| 52 | GO:0004722: protein serine/threonine phosphatase activity | 1.36E-02 |
| 53 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.40E-02 |
| 54 | GO:0004519: endonuclease activity | 1.75E-02 |
| 55 | GO:0016829: lyase activity | 1.79E-02 |
| 56 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.17E-02 |
| 57 | GO:0003684: damaged DNA binding | 2.49E-02 |
| 58 | GO:0016791: phosphatase activity | 2.49E-02 |
| 59 | GO:0005200: structural constituent of cytoskeleton | 2.60E-02 |
| 60 | GO:0015250: water channel activity | 2.82E-02 |
| 61 | GO:0030247: polysaccharide binding | 3.17E-02 |
| 62 | GO:0004721: phosphoprotein phosphatase activity | 3.17E-02 |
| 63 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.17E-02 |
| 64 | GO:0005096: GTPase activator activity | 3.53E-02 |
| 65 | GO:0050897: cobalt ion binding | 3.78E-02 |
| 66 | GO:0003746: translation elongation factor activity | 4.03E-02 |
| 67 | GO:0003697: single-stranded DNA binding | 4.03E-02 |
| 68 | GO:0003993: acid phosphatase activity | 4.16E-02 |
| 69 | GO:0004672: protein kinase activity | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009569: chloroplast starch grain | 4.90E-04 |
| 2 | GO:0031357: integral component of chloroplast inner membrane | 4.90E-04 |
| 3 | GO:0009507: chloroplast | 8.28E-04 |
| 4 | GO:0009941: chloroplast envelope | 8.71E-04 |
| 5 | GO:0032432: actin filament bundle | 1.14E-03 |
| 6 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.14E-03 |
| 7 | GO:0009986: cell surface | 3.36E-03 |
| 8 | GO:0005884: actin filament | 6.98E-03 |
| 9 | GO:0016602: CCAAT-binding factor complex | 8.39E-03 |
| 10 | GO:0009706: chloroplast inner membrane | 1.32E-02 |
| 11 | GO:0009532: plastid stroma | 1.32E-02 |
| 12 | GO:0015629: actin cytoskeleton | 1.49E-02 |
| 13 | GO:0005871: kinesin complex | 1.68E-02 |
| 14 | GO:0005759: mitochondrial matrix | 2.07E-02 |
| 15 | GO:0031965: nuclear membrane | 2.07E-02 |
| 16 | GO:0005694: chromosome | 2.28E-02 |
| 17 | GO:0030529: intracellular ribonucleoprotein complex | 2.82E-02 |
| 18 | GO:0046658: anchored component of plasma membrane | 3.02E-02 |
| 19 | GO:0009536: plastid | 3.33E-02 |
| 20 | GO:0009570: chloroplast stroma | 3.33E-02 |
| 21 | GO:0009707: chloroplast outer membrane | 3.41E-02 |
| 22 | GO:0031969: chloroplast membrane | 4.36E-02 |