co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:0008298: intracellular mRNA localization	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
8	GO:0043488: regulation of mRNA stability	0.00E+00
9	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.52E-06
10	GO:0005977: glycogen metabolic process	5.61E-06
11	GO:0010239: chloroplast mRNA processing	1.30E-05
12	GO:0009767: photosynthetic electron transport chain	1.65E-05
13	GO:0010021: amylopectin biosynthetic process	2.40E-05
14	GO:1901259: chloroplast rRNA processing	8.05E-05
15	GO:0019252: starch biosynthetic process	1.27E-04
16	GO:0009658: chloroplast organization	1.43E-04
17	GO:0009657: plastid organization	1.72E-04
18	GO:0000476: maturation of 4.5S rRNA	1.77E-04
19	GO:0043953: protein transport by the Tat complex	1.77E-04
20	GO:0009443: pyridoxal 5'-phosphate salvage	1.77E-04
21	GO:0000967: rRNA 5'-end processing	1.77E-04
22	GO:0051775: response to redox state	1.77E-04
23	GO:0031426: polycistronic mRNA processing	1.77E-04
24	GO:0006637: acyl-CoA metabolic process	1.77E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	1.77E-04
26	GO:0000481: maturation of 5S rRNA	1.77E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	1.77E-04
28	GO:0065002: intracellular protein transmembrane transport	1.77E-04
29	GO:0010028: xanthophyll cycle	1.77E-04
30	GO:0034337: RNA folding	1.77E-04
31	GO:0015995: chlorophyll biosynthetic process	2.94E-04
32	GO:0019684: photosynthesis, light reaction	3.42E-04
33	GO:1900871: chloroplast mRNA modification	4.01E-04
34	GO:0010541: acropetal auxin transport	4.01E-04
35	GO:0000256: allantoin catabolic process	4.01E-04
36	GO:1904143: positive regulation of carotenoid biosynthetic process	4.01E-04
37	GO:0051262: protein tetramerization	4.01E-04
38	GO:0034470: ncRNA processing	4.01E-04
39	GO:0010020: chloroplast fission	5.04E-04
40	GO:0010160: formation of animal organ boundary	6.55E-04
41	GO:0006954: inflammatory response	6.55E-04
42	GO:0010136: ureide catabolic process	6.55E-04
43	GO:0015940: pantothenate biosynthetic process	6.55E-04
44	GO:0007017: microtubule-based process	7.64E-04
45	GO:0009152: purine ribonucleotide biosynthetic process	9.34E-04
46	GO:0046653: tetrahydrofolate metabolic process	9.34E-04
47	GO:0006107: oxaloacetate metabolic process	9.34E-04
48	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.34E-04
49	GO:0006145: purine nucleobase catabolic process	9.34E-04
50	GO:0051016: barbed-end actin filament capping	9.34E-04
51	GO:0009226: nucleotide-sugar biosynthetic process	9.34E-04
52	GO:0016556: mRNA modification	9.34E-04
53	GO:0010731: protein glutathionylation	9.34E-04
54	GO:2000122: negative regulation of stomatal complex development	1.24E-03
55	GO:0006734: NADH metabolic process	1.24E-03
56	GO:0010037: response to carbon dioxide	1.24E-03
57	GO:0015976: carbon utilization	1.24E-03
58	GO:0009958: positive gravitropism	1.35E-03
59	GO:0080110: sporopollenin biosynthetic process	1.57E-03
60	GO:0043097: pyrimidine nucleoside salvage	1.57E-03
61	GO:0032543: mitochondrial translation	1.57E-03
62	GO:0006564: L-serine biosynthetic process	1.57E-03
63	GO:0006655: phosphatidylglycerol biosynthetic process	1.94E-03
64	GO:0006206: pyrimidine nucleobase metabolic process	1.94E-03
65	GO:0032973: amino acid export	1.94E-03
66	GO:0060918: auxin transport	1.94E-03
67	GO:0050665: hydrogen peroxide biosynthetic process	1.94E-03
68	GO:0048280: vesicle fusion with Golgi apparatus	2.32E-03
69	GO:0009854: oxidative photosynthetic carbon pathway	2.32E-03
70	GO:0010019: chloroplast-nucleus signaling pathway	2.32E-03
71	GO:0010027: thylakoid membrane organization	2.38E-03
72	GO:0043090: amino acid import	2.74E-03
73	GO:0051693: actin filament capping	2.74E-03
74	GO:0009451: RNA modification	2.92E-03
75	GO:0010078: maintenance of root meristem identity	3.17E-03
76	GO:0032508: DNA duplex unwinding	3.17E-03
77	GO:0016559: peroxisome fission	3.17E-03
78	GO:0048527: lateral root development	3.57E-03
79	GO:0010204: defense response signaling pathway, resistance gene-independent	3.63E-03
80	GO:0043562: cellular response to nitrogen levels	3.63E-03
81	GO:0017004: cytochrome complex assembly	3.63E-03
82	GO:0048507: meristem development	4.10E-03
83	GO:0080144: amino acid homeostasis	4.10E-03
84	GO:0098656: anion transmembrane transport	4.10E-03
85	GO:0005982: starch metabolic process	4.60E-03
86	GO:0006896: Golgi to vacuole transport	5.11E-03
87	GO:0009416: response to light stimulus	5.37E-03
88	GO:0009089: lysine biosynthetic process via diaminopimelate	5.65E-03
89	GO:0006415: translational termination	5.65E-03
90	GO:0043085: positive regulation of catalytic activity	5.65E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	5.65E-03
92	GO:0009684: indoleacetic acid biosynthetic process	5.65E-03
93	GO:0016024: CDP-diacylglycerol biosynthetic process	6.20E-03
94	GO:0008361: regulation of cell size	6.20E-03
95	GO:0010588: cotyledon vascular tissue pattern formation	6.78E-03
96	GO:0006108: malate metabolic process	6.78E-03
97	GO:0030036: actin cytoskeleton organization	6.78E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
99	GO:0048467: gynoecium development	7.37E-03
100	GO:0019253: reductive pentose-phosphate cycle	7.37E-03
101	GO:0007015: actin filament organization	7.37E-03
102	GO:0010540: basipetal auxin transport	7.37E-03
103	GO:0015979: photosynthesis	7.68E-03
104	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
105	GO:0005975: carbohydrate metabolic process	8.94E-03
106	GO:0006418: tRNA aminoacylation for protein translation	9.92E-03
107	GO:0019915: lipid storage	1.06E-02
108	GO:0019748: secondary metabolic process	1.13E-02
109	GO:0009686: gibberellin biosynthetic process	1.20E-02
110	GO:0006012: galactose metabolic process	1.20E-02
111	GO:0010584: pollen exine formation	1.27E-02
112	GO:0048443: stamen development	1.27E-02
113	GO:0009306: protein secretion	1.27E-02
114	GO:0009058: biosynthetic process	1.28E-02
115	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
116	GO:0080022: primary root development	1.43E-02
117	GO:0010087: phloem or xylem histogenesis	1.43E-02
118	GO:0010268: brassinosteroid homeostasis	1.50E-02
119	GO:0006520: cellular amino acid metabolic process	1.50E-02
120	GO:0009741: response to brassinosteroid	1.50E-02
121	GO:0006413: translational initiation	1.56E-02
122	GO:0007059: chromosome segregation	1.58E-02
123	GO:0009646: response to absence of light	1.58E-02
124	GO:0006623: protein targeting to vacuole	1.66E-02
125	GO:0009791: post-embryonic development	1.66E-02
126	GO:0048825: cotyledon development	1.66E-02
127	GO:0009851: auxin biosynthetic process	1.66E-02
128	GO:0071554: cell wall organization or biogenesis	1.75E-02
129	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
130	GO:0016132: brassinosteroid biosynthetic process	1.75E-02
131	GO:0007264: small GTPase mediated signal transduction	1.83E-02
132	GO:0032502: developmental process	1.83E-02
133	GO:0009793: embryo development ending in seed dormancy	1.85E-02
134	GO:1901657: glycosyl compound metabolic process	1.91E-02
135	GO:0016125: sterol metabolic process	2.00E-02
136	GO:0009639: response to red or far red light	2.00E-02
137	GO:0008380: RNA splicing	2.00E-02
138	GO:0009567: double fertilization forming a zygote and endosperm	2.00E-02
139	GO:0009409: response to cold	2.45E-02
140	GO:0009627: systemic acquired resistance	2.45E-02
141	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
142	GO:0016311: dephosphorylation	2.64E-02
143	GO:0018298: protein-chromophore linkage	2.74E-02
144	GO:0006970: response to osmotic stress	2.80E-02
145	GO:0006811: ion transport	2.94E-02
146	GO:0010218: response to far red light	2.94E-02
147	GO:0055085: transmembrane transport	2.97E-02
148	GO:0010119: regulation of stomatal movement	3.04E-02
149	GO:0009853: photorespiration	3.24E-02
150	GO:0009637: response to blue light	3.24E-02
151	GO:0006099: tricarboxylic acid cycle	3.35E-02
152	GO:0009640: photomorphogenesis	3.88E-02
153	GO:0009926: auxin polar transport	3.88E-02
154	GO:0051707: response to other organism	3.88E-02
155	GO:0009636: response to toxic substance	4.22E-02
156	GO:0016042: lipid catabolic process	4.60E-02
157	GO:0006364: rRNA processing	4.80E-02
158	GO:0051603: proteolysis involved in cellular protein catabolic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
6	GO:0008974: phosphoribulokinase activity	0.00E+00
7	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
8	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0019156: isoamylase activity	1.52E-06
11	GO:0004556: alpha-amylase activity	5.77E-05
12	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.05E-05
13	GO:0019899: enzyme binding	1.07E-04
14	GO:0004033: aldo-keto reductase (NADP) activity	1.37E-04
15	GO:0005525: GTP binding	1.74E-04
16	GO:0005227: calcium activated cation channel activity	1.77E-04
17	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.77E-04
18	GO:0051777: ent-kaurenoate oxidase activity	1.77E-04
19	GO:0008746: NAD(P)+ transhydrogenase activity	1.77E-04
20	GO:0004328: formamidase activity	1.77E-04
21	GO:0046906: tetrapyrrole binding	1.77E-04
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.01E-04
23	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.01E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.01E-04
25	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.01E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.01E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	4.01E-04
28	GO:0003924: GTPase activity	4.58E-04
29	GO:0003993: acid phosphatase activity	4.86E-04
30	GO:0002161: aminoacyl-tRNA editing activity	6.55E-04
31	GO:0004848: ureidoglycolate hydrolase activity	6.55E-04
32	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.55E-04
33	GO:0070402: NADPH binding	6.55E-04
34	GO:0008864: formyltetrahydrofolate deformylase activity	6.55E-04
35	GO:0048027: mRNA 5'-UTR binding	9.34E-04
36	GO:0016851: magnesium chelatase activity	9.34E-04
37	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.34E-04
38	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	9.34E-04
39	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	9.34E-04
40	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	9.34E-04
41	GO:0004045: aminoacyl-tRNA hydrolase activity	1.24E-03
42	GO:0080032: methyl jasmonate esterase activity	1.24E-03
43	GO:0043495: protein anchor	1.24E-03
44	GO:0009011: starch synthase activity	1.24E-03
45	GO:0008891: glycolate oxidase activity	1.24E-03
46	GO:0016846: carbon-sulfur lyase activity	1.57E-03
47	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.94E-03
48	GO:0042578: phosphoric ester hydrolase activity	1.94E-03
49	GO:0016615: malate dehydrogenase activity	1.94E-03
50	GO:2001070: starch binding	1.94E-03
51	GO:0080030: methyl indole-3-acetate esterase activity	1.94E-03
52	GO:0005200: structural constituent of cytoskeleton	2.12E-03
53	GO:0030060: L-malate dehydrogenase activity	2.32E-03
54	GO:0004849: uridine kinase activity	2.32E-03
55	GO:0005261: cation channel activity	2.32E-03
56	GO:0003730: mRNA 3'-UTR binding	2.32E-03
57	GO:0008195: phosphatidate phosphatase activity	2.32E-03
58	GO:0004519: endonuclease activity	2.55E-03
59	GO:0003747: translation release factor activity	4.10E-03
60	GO:0047617: acyl-CoA hydrolase activity	4.60E-03
61	GO:0004185: serine-type carboxypeptidase activity	5.03E-03
62	GO:0016788: hydrolase activity, acting on ester bonds	5.05E-03
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.87E-03
64	GO:0010329: auxin efflux transmembrane transporter activity	6.78E-03
65	GO:0005315: inorganic phosphate transmembrane transporter activity	6.78E-03
66	GO:0004089: carbonate dehydratase activity	6.78E-03
67	GO:0016491: oxidoreductase activity	6.99E-03
68	GO:0052689: carboxylic ester hydrolase activity	7.37E-03
69	GO:0005528: FK506 binding	9.26E-03
70	GO:0005216: ion channel activity	9.92E-03
71	GO:0003723: RNA binding	1.02E-02
72	GO:0022891: substrate-specific transmembrane transporter activity	1.20E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.27E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	1.35E-02
75	GO:0008565: protein transporter activity	1.45E-02
76	GO:0010181: FMN binding	1.58E-02
77	GO:0050662: coenzyme binding	1.58E-02
78	GO:0048038: quinone binding	1.75E-02
79	GO:0003743: translation initiation factor activity	1.96E-02
80	GO:0008237: metallopeptidase activity	2.09E-02
81	GO:0042802: identical protein binding	2.13E-02
82	GO:0016413: O-acetyltransferase activity	2.18E-02
83	GO:0016597: amino acid binding	2.18E-02
84	GO:0016168: chlorophyll binding	2.36E-02
85	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
86	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
87	GO:0008422: beta-glucosidase activity	3.45E-02
88	GO:0000149: SNARE binding	3.45E-02
89	GO:0004364: glutathione transferase activity	3.78E-02
90	GO:0005484: SNAP receptor activity	3.88E-02
91	GO:0051287: NAD binding	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	5.11E-23
5	GO:0009570: chloroplast stroma	3.86E-11
6	GO:0033281: TAT protein transport complex	5.61E-06
7	GO:0009535: chloroplast thylakoid membrane	2.83E-05
8	GO:0031361: integral component of thylakoid membrane	1.77E-04
9	GO:0042644: chloroplast nucleoid	2.09E-04
10	GO:0009543: chloroplast thylakoid lumen	2.78E-04
11	GO:0043036: starch grain	4.01E-04
12	GO:0008290: F-actin capping protein complex	4.01E-04
13	GO:0030095: chloroplast photosystem II	5.04E-04
14	GO:0010007: magnesium chelatase complex	6.55E-04
15	GO:0009654: photosystem II oxygen evolving complex	7.64E-04
16	GO:0042646: plastid nucleoid	9.34E-04
17	GO:0030658: transport vesicle membrane	9.34E-04
18	GO:0015630: microtubule cytoskeleton	9.34E-04
19	GO:0009526: plastid envelope	1.24E-03
20	GO:0019898: extrinsic component of membrane	1.55E-03
21	GO:0012507: ER to Golgi transport vesicle membrane	3.17E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.10E-03
23	GO:0045298: tubulin complex	4.10E-03
24	GO:0031902: late endosome membrane	4.64E-03
25	GO:0005765: lysosomal membrane	5.65E-03
26	GO:0032040: small-subunit processome	6.20E-03
27	GO:0009941: chloroplast envelope	8.73E-03
28	GO:0009706: chloroplast inner membrane	9.66E-03
29	GO:0042651: thylakoid membrane	9.92E-03
30	GO:0043231: intracellular membrane-bounded organelle	1.21E-02
31	GO:0009522: photosystem I	1.58E-02
32	GO:0009523: photosystem II	1.66E-02
33	GO:0005618: cell wall	1.70E-02
34	GO:0010319: stromule	2.09E-02
35	GO:0030529: intracellular ribonucleoprotein complex	2.27E-02
36	GO:0009707: chloroplast outer membrane	2.74E-02
37	GO:0009534: chloroplast thylakoid	2.79E-02
38	GO:0005773: vacuole	2.95E-02
39	GO:0005874: microtubule	3.11E-02
40	GO:0031969: chloroplast membrane	3.22E-02
41	GO:0005819: spindle	3.45E-02
42	GO:0031201: SNARE complex	3.67E-02
43	GO:0031977: thylakoid lumen	3.67E-02