co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0016118: carotenoid catabolic process	0.00E+00
6	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
7	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
8	GO:0010207: photosystem II assembly	1.02E-05
9	GO:0042549: photosystem II stabilization	3.53E-05
10	GO:0031998: regulation of fatty acid beta-oxidation	1.31E-04
11	GO:0080112: seed growth	1.31E-04
12	GO:0005980: glycogen catabolic process	1.31E-04
13	GO:0043953: protein transport by the Tat complex	1.31E-04
14	GO:0071277: cellular response to calcium ion	1.31E-04
15	GO:1905039: carboxylic acid transmembrane transport	1.31E-04
16	GO:1905200: gibberellic acid transmembrane transport	1.31E-04
17	GO:0046467: membrane lipid biosynthetic process	1.31E-04
18	GO:0065002: intracellular protein transmembrane transport	1.31E-04
19	GO:0080093: regulation of photorespiration	1.31E-04
20	GO:0006098: pentose-phosphate shunt	1.34E-04
21	GO:0090333: regulation of stomatal closure	1.34E-04
22	GO:0009773: photosynthetic electron transport in photosystem I	2.24E-04
23	GO:0006094: gluconeogenesis	2.95E-04
24	GO:0016121: carotene catabolic process	3.03E-04
25	GO:0080029: cellular response to boron-containing substance levels	3.03E-04
26	GO:0034755: iron ion transmembrane transport	3.03E-04
27	GO:0071457: cellular response to ozone	3.03E-04
28	GO:0016124: xanthophyll catabolic process	3.03E-04
29	GO:0010114: response to red light	3.72E-04
30	GO:0046713: borate transport	7.14E-04
31	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.14E-04
32	GO:1902358: sulfate transmembrane transport	7.14E-04
33	GO:0071484: cellular response to light intensity	7.14E-04
34	GO:0009152: purine ribonucleotide biosynthetic process	7.14E-04
35	GO:0046653: tetrahydrofolate metabolic process	7.14E-04
36	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.14E-04
37	GO:0071486: cellular response to high light intensity	9.47E-04
38	GO:0009765: photosynthesis, light harvesting	9.47E-04
39	GO:0015994: chlorophyll metabolic process	9.47E-04
40	GO:0010107: potassium ion import	9.47E-04
41	GO:0032502: developmental process	1.18E-03
42	GO:0006097: glyoxylate cycle	1.20E-03
43	GO:0071493: cellular response to UV-B	1.20E-03
44	GO:0016120: carotene biosynthetic process	1.20E-03
45	GO:0098719: sodium ion import across plasma membrane	1.20E-03
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.47E-03
47	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.47E-03
48	GO:0009228: thiamine biosynthetic process	1.47E-03
49	GO:1902456: regulation of stomatal opening	1.47E-03
50	GO:0010190: cytochrome b6f complex assembly	1.47E-03
51	GO:0009643: photosynthetic acclimation	1.47E-03
52	GO:0055114: oxidation-reduction process	1.52E-03
53	GO:0015995: chlorophyll biosynthetic process	1.85E-03
54	GO:0008272: sulfate transport	2.06E-03
55	GO:0009769: photosynthesis, light harvesting in photosystem II	2.06E-03
56	GO:0009645: response to low light intensity stimulus	2.06E-03
57	GO:0052543: callose deposition in cell wall	2.39E-03
58	GO:0042255: ribosome assembly	2.39E-03
59	GO:0006353: DNA-templated transcription, termination	2.39E-03
60	GO:0070413: trehalose metabolism in response to stress	2.39E-03
61	GO:0009704: de-etiolation	2.39E-03
62	GO:0050821: protein stabilization	2.39E-03
63	GO:0055075: potassium ion homeostasis	2.39E-03
64	GO:0015996: chlorophyll catabolic process	2.73E-03
65	GO:0009657: plastid organization	2.73E-03
66	GO:0019430: removal of superoxide radicals	2.73E-03
67	GO:0009821: alkaloid biosynthetic process	3.08E-03
68	GO:0051453: regulation of intracellular pH	3.46E-03
69	GO:0005982: starch metabolic process	3.46E-03
70	GO:0009641: shade avoidance	3.84E-03
71	GO:0031627: telomeric loop formation	3.84E-03
72	GO:0015770: sucrose transport	4.24E-03
73	GO:0006879: cellular iron ion homeostasis	4.24E-03
74	GO:0046686: response to cadmium ion	4.48E-03
75	GO:0006108: malate metabolic process	5.08E-03
76	GO:0006096: glycolytic process	5.28E-03
77	GO:0010143: cutin biosynthetic process	5.52E-03
78	GO:0010223: secondary shoot formation	5.52E-03
79	GO:0009901: anther dehiscence	5.97E-03
80	GO:0006636: unsaturated fatty acid biosynthetic process	6.43E-03
81	GO:0005992: trehalose biosynthetic process	6.91E-03
82	GO:0009768: photosynthesis, light harvesting in photosystem I	7.40E-03
83	GO:0019915: lipid storage	7.91E-03
84	GO:0009269: response to desiccation	7.91E-03
85	GO:0016114: terpenoid biosynthetic process	7.91E-03
86	GO:0009058: biosynthetic process	8.38E-03
87	GO:0030433: ubiquitin-dependent ERAD pathway	8.42E-03
88	GO:0016117: carotenoid biosynthetic process	1.00E-02
89	GO:0042335: cuticle development	1.06E-02
90	GO:0000413: protein peptidyl-prolyl isomerization	1.06E-02
91	GO:0009741: response to brassinosteroid	1.12E-02
92	GO:0071472: cellular response to salt stress	1.12E-02
93	GO:0006885: regulation of pH	1.12E-02
94	GO:0006814: sodium ion transport	1.18E-02
95	GO:0019252: starch biosynthetic process	1.24E-02
96	GO:0009630: gravitropism	1.36E-02
97	GO:0006810: transport	1.48E-02
98	GO:0009567: double fertilization forming a zygote and endosperm	1.49E-02
99	GO:0010027: thylakoid membrane organization	1.68E-02
100	GO:0042128: nitrate assimilation	1.82E-02
101	GO:0018298: protein-chromophore linkage	2.03E-02
102	GO:0009813: flavonoid biosynthetic process	2.11E-02
103	GO:0010218: response to far red light	2.18E-02
104	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
105	GO:0009637: response to blue light	2.41E-02
106	GO:0009853: photorespiration	2.41E-02
107	GO:0015979: photosynthesis	2.42E-02
108	GO:0006099: tricarboxylic acid cycle	2.48E-02
109	GO:0034599: cellular response to oxidative stress	2.48E-02
110	GO:0051707: response to other organism	2.88E-02
111	GO:0000209: protein polyubiquitination	2.96E-02
112	GO:0009644: response to high light intensity	3.05E-02
113	GO:0006979: response to oxidative stress	3.17E-02
114	GO:0006855: drug transmembrane transport	3.22E-02
115	GO:0006364: rRNA processing	3.56E-02
116	GO:0006813: potassium ion transport	3.56E-02
117	GO:0009733: response to auxin	3.63E-02
118	GO:0010224: response to UV-B	3.65E-02
119	GO:0006417: regulation of translation	3.83E-02
120	GO:0006396: RNA processing	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
2	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0009011: starch synthase activity	1.44E-05
6	GO:0004332: fructose-bisphosphate aldolase activity	3.53E-05
7	GO:0035671: enone reductase activity	1.31E-04
8	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.31E-04
9	GO:1905201: gibberellin transmembrane transporter activity	1.31E-04
10	GO:0008184: glycogen phosphorylase activity	1.31E-04
11	GO:0004645: phosphorylase activity	1.31E-04
12	GO:0034256: chlorophyll(ide) b reductase activity	1.31E-04
13	GO:0015168: glycerol transmembrane transporter activity	1.31E-04
14	GO:0045486: naringenin 3-dioxygenase activity	1.31E-04
15	GO:0015386: potassium:proton antiporter activity	2.24E-04
16	GO:0047746: chlorophyllase activity	3.03E-04
17	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.03E-04
18	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	3.03E-04
19	GO:0033201: alpha-1,4-glucan synthase activity	3.03E-04
20	GO:0008864: formyltetrahydrofolate deformylase activity	4.99E-04
21	GO:0004373: glycogen (starch) synthase activity	4.99E-04
22	GO:0050734: hydroxycinnamoyltransferase activity	4.99E-04
23	GO:0004751: ribose-5-phosphate isomerase activity	4.99E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.99E-04
25	GO:0022890: inorganic cation transmembrane transporter activity	7.14E-04
26	GO:0046715: borate transmembrane transporter activity	7.14E-04
27	GO:0003727: single-stranded RNA binding	7.24E-04
28	GO:0016491: oxidoreductase activity	8.61E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.47E-04
30	GO:0015204: urea transmembrane transporter activity	9.47E-04
31	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.20E-03
32	GO:0004784: superoxide dismutase activity	1.47E-03
33	GO:0015081: sodium ion transmembrane transporter activity	1.47E-03
34	GO:0016615: malate dehydrogenase activity	1.47E-03
35	GO:0030060: L-malate dehydrogenase activity	1.76E-03
36	GO:0008271: secondary active sulfate transmembrane transporter activity	2.73E-03
37	GO:0016844: strictosidine synthase activity	3.46E-03
38	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.46E-03
39	GO:0005381: iron ion transmembrane transporter activity	3.46E-03
40	GO:0003691: double-stranded telomeric DNA binding	4.24E-03
41	GO:0008515: sucrose transmembrane transporter activity	4.24E-03
42	GO:0015116: sulfate transmembrane transporter activity	4.65E-03
43	GO:0003725: double-stranded RNA binding	5.08E-03
44	GO:0004022: alcohol dehydrogenase (NAD) activity	5.08E-03
45	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.52E-03
46	GO:0051119: sugar transmembrane transporter activity	5.97E-03
47	GO:0031409: pigment binding	6.43E-03
48	GO:0031418: L-ascorbic acid binding	6.91E-03
49	GO:0015079: potassium ion transmembrane transporter activity	7.40E-03
50	GO:0015299: solute:proton antiporter activity	1.18E-02
51	GO:0048038: quinone binding	1.30E-02
52	GO:0015385: sodium:proton antiporter activity	1.42E-02
53	GO:0016791: phosphatase activity	1.49E-02
54	GO:0015250: water channel activity	1.68E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	1.74E-02
56	GO:0016168: chlorophyll binding	1.75E-02
57	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.96E-02
58	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.48E-02
59	GO:0051537: 2 iron, 2 sulfur cluster binding	3.05E-02
60	GO:0043621: protein self-association	3.05E-02
61	GO:0015293: symporter activity	3.13E-02
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.22E-02
63	GO:0003690: double-stranded DNA binding	3.65E-02
64	GO:0031625: ubiquitin protein ligase binding	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	3.18E-16
4	GO:0009535: chloroplast thylakoid membrane	5.92E-09
5	GO:0009534: chloroplast thylakoid	1.16E-08
6	GO:0009941: chloroplast envelope	5.22E-08
7	GO:0009579: thylakoid	1.66E-07
8	GO:0010287: plastoglobule	8.63E-06
9	GO:0009543: chloroplast thylakoid lumen	9.88E-06
10	GO:0031361: integral component of thylakoid membrane	1.31E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.34E-04
12	GO:0031977: thylakoid lumen	3.34E-04
13	GO:0009509: chromoplast	4.99E-04
14	GO:0033281: TAT protein transport complex	4.99E-04
15	GO:0031969: chloroplast membrane	6.63E-04
16	GO:0009517: PSII associated light-harvesting complex II	9.47E-04
17	GO:0009523: photosystem II	1.04E-03
18	GO:0009501: amyloplast	2.39E-03
19	GO:0000783: nuclear telomere cap complex	2.73E-03
20	GO:0009508: plastid chromosome	5.08E-03
21	GO:0030076: light-harvesting complex	5.97E-03
22	GO:0009570: chloroplast stroma	7.15E-03
23	GO:0009654: photosystem II oxygen evolving complex	7.40E-03
24	GO:0042651: thylakoid membrane	7.40E-03
25	GO:0005887: integral component of plasma membrane	9.20E-03
26	GO:0009522: photosystem I	1.18E-02
27	GO:0019898: extrinsic component of membrane	1.24E-02
28	GO:0031965: nuclear membrane	1.24E-02
29	GO:0010319: stromule	1.55E-02
30	GO:0009295: nucleoid	1.55E-02
31	GO:0005886: plasma membrane	3.44E-02