Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
2GO:0033528: S-methylmethionine cycle0.00E+00
3GO:0006114: glycerol biosynthetic process0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0044154: histone H3-K14 acetylation0.00E+00
6GO:0010081: regulation of inflorescence meristem growth0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0009583: detection of light stimulus0.00E+00
9GO:0071000: response to magnetism0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:0043972: histone H3-K23 acetylation0.00E+00
12GO:0000373: Group II intron splicing1.36E-06
13GO:0009793: embryo development ending in seed dormancy7.39E-05
14GO:0010158: abaxial cell fate specification2.20E-04
15GO:0000012: single strand break repair5.12E-04
16GO:0043266: regulation of potassium ion transport5.12E-04
17GO:0010080: regulation of floral meristem growth5.12E-04
18GO:1902025: nitrate import5.12E-04
19GO:0072387: flavin adenine dinucleotide metabolic process5.12E-04
20GO:0043087: regulation of GTPase activity5.12E-04
21GO:2000021: regulation of ion homeostasis5.12E-04
22GO:0043609: regulation of carbon utilization5.12E-04
23GO:0006436: tryptophanyl-tRNA aminoacylation5.12E-04
24GO:0090548: response to nitrate starvation5.12E-04
25GO:0000066: mitochondrial ornithine transport5.12E-04
26GO:0034757: negative regulation of iron ion transport5.12E-04
27GO:0006419: alanyl-tRNA aminoacylation5.12E-04
28GO:0051171: regulation of nitrogen compound metabolic process5.12E-04
29GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.12E-04
30GO:0043489: RNA stabilization5.12E-04
31GO:0043971: histone H3-K18 acetylation5.12E-04
32GO:0048657: anther wall tapetum cell differentiation5.12E-04
33GO:0000105: histidine biosynthetic process6.64E-04
34GO:0071482: cellular response to light stimulus8.09E-04
35GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.10E-03
36GO:0099402: plant organ development1.10E-03
37GO:0006435: threonyl-tRNA aminoacylation1.10E-03
38GO:0001736: establishment of planar polarity1.10E-03
39GO:0010343: singlet oxygen-mediated programmed cell death1.10E-03
40GO:1901529: positive regulation of anion channel activity1.10E-03
41GO:0080005: photosystem stoichiometry adjustment1.10E-03
42GO:0048255: mRNA stabilization1.10E-03
43GO:0010617: circadian regulation of calcium ion oscillation1.10E-03
44GO:0010271: regulation of chlorophyll catabolic process1.10E-03
45GO:0009451: RNA modification1.18E-03
46GO:0045037: protein import into chloroplast stroma1.76E-03
47GO:0010582: floral meristem determinacy1.76E-03
48GO:0010022: meristem determinacy1.80E-03
49GO:1901672: positive regulation of systemic acquired resistance1.80E-03
50GO:0006696: ergosterol biosynthetic process1.80E-03
51GO:0045493: xylan catabolic process1.80E-03
52GO:0030029: actin filament-based process1.80E-03
53GO:1902448: positive regulation of shade avoidance1.80E-03
54GO:0080117: secondary growth1.80E-03
55GO:0006000: fructose metabolic process1.80E-03
56GO:0009416: response to light stimulus2.00E-03
57GO:0010207: photosystem II assembly2.26E-03
58GO:0009658: chloroplast organization2.46E-03
59GO:2001141: regulation of RNA biosynthetic process2.61E-03
60GO:0051513: regulation of monopolar cell growth2.61E-03
61GO:0009102: biotin biosynthetic process2.61E-03
62GO:0051639: actin filament network formation2.61E-03
63GO:0034059: response to anoxia2.61E-03
64GO:0010239: chloroplast mRNA processing2.61E-03
65GO:0009800: cinnamic acid biosynthetic process2.61E-03
66GO:0010306: rhamnogalacturonan II biosynthetic process2.61E-03
67GO:0010255: glucose mediated signaling pathway2.61E-03
68GO:1901332: negative regulation of lateral root development2.61E-03
69GO:0005992: trehalose biosynthetic process3.13E-03
70GO:0008295: spermidine biosynthetic process3.52E-03
71GO:1902347: response to strigolactone3.52E-03
72GO:0051781: positive regulation of cell division3.52E-03
73GO:0051764: actin crosslink formation3.52E-03
74GO:0048442: sepal development3.52E-03
75GO:0051322: anaphase3.52E-03
76GO:0006661: phosphatidylinositol biosynthetic process3.52E-03
77GO:0015846: polyamine transport3.52E-03
78GO:0006021: inositol biosynthetic process3.52E-03
79GO:0010117: photoprotection4.52E-03
80GO:0046283: anthocyanin-containing compound metabolic process4.52E-03
81GO:0031365: N-terminal protein amino acid modification4.52E-03
82GO:1902183: regulation of shoot apical meristem development4.52E-03
83GO:0016123: xanthophyll biosynthetic process4.52E-03
84GO:0006465: signal peptide processing4.52E-03
85GO:0080110: sporopollenin biosynthetic process4.52E-03
86GO:0010584: pollen exine formation4.94E-03
87GO:0016117: carotenoid biosynthetic process5.36E-03
88GO:0048827: phyllome development5.60E-03
89GO:0060918: auxin transport5.60E-03
90GO:0048831: regulation of shoot system development5.60E-03
91GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.60E-03
92GO:1901371: regulation of leaf morphogenesis5.60E-03
93GO:0006559: L-phenylalanine catabolic process5.60E-03
94GO:0048868: pollen tube development6.25E-03
95GO:0046323: glucose import6.25E-03
96GO:0010268: brassinosteroid homeostasis6.25E-03
97GO:0009958: positive gravitropism6.25E-03
98GO:0007018: microtubule-based movement6.73E-03
99GO:0048509: regulation of meristem development6.75E-03
100GO:0010310: regulation of hydrogen peroxide metabolic process6.75E-03
101GO:0010076: maintenance of floral meristem identity6.75E-03
102GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.75E-03
103GO:0016132: brassinosteroid biosynthetic process7.73E-03
104GO:0006400: tRNA modification7.99E-03
105GO:0051510: regulation of unidimensional cell growth7.99E-03
106GO:0009610: response to symbiotic fungus7.99E-03
107GO:0010098: suspensor development7.99E-03
108GO:0010050: vegetative phase change7.99E-03
109GO:0007264: small GTPase mediated signal transduction8.27E-03
110GO:0048316: seed development8.43E-03
111GO:0006353: DNA-templated transcription, termination9.31E-03
112GO:0070413: trehalose metabolism in response to stress9.31E-03
113GO:0045010: actin nucleation9.31E-03
114GO:0048564: photosystem I assembly9.31E-03
115GO:0009850: auxin metabolic process9.31E-03
116GO:0016125: sterol metabolic process9.39E-03
117GO:0009657: plastid organization1.07E-02
118GO:0032544: plastid translation1.07E-02
119GO:0044030: regulation of DNA methylation1.07E-02
120GO:0006002: fructose 6-phosphate metabolic process1.07E-02
121GO:0022900: electron transport chain1.07E-02
122GO:0009827: plant-type cell wall modification1.07E-02
123GO:0009911: positive regulation of flower development1.12E-02
124GO:0016126: sterol biosynthetic process1.12E-02
125GO:0090305: nucleic acid phosphodiester bond hydrolysis1.22E-02
126GO:2000024: regulation of leaf development1.22E-02
127GO:0010411: xyloglucan metabolic process1.33E-02
128GO:0016573: histone acetylation1.37E-02
129GO:1900426: positive regulation of defense response to bacterium1.37E-02
130GO:0009638: phototropism1.37E-02
131GO:0010018: far-red light signaling pathway1.37E-02
132GO:0016571: histone methylation1.37E-02
133GO:0009086: methionine biosynthetic process1.37E-02
134GO:0010380: regulation of chlorophyll biosynthetic process1.37E-02
135GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.40E-02
136GO:0018298: protein-chromophore linkage1.47E-02
137GO:0048441: petal development1.53E-02
138GO:0048829: root cap development1.53E-02
139GO:0006259: DNA metabolic process1.53E-02
140GO:0006535: cysteine biosynthetic process from serine1.53E-02
141GO:0000160: phosphorelay signal transduction system1.55E-02
142GO:0006352: DNA-templated transcription, initiation1.69E-02
143GO:0006415: translational termination1.69E-02
144GO:0048765: root hair cell differentiation1.69E-02
145GO:0006265: DNA topological change1.69E-02
146GO:0009910: negative regulation of flower development1.70E-02
147GO:0006790: sulfur compound metabolic process1.86E-02
148GO:0009637: response to blue light1.87E-02
149GO:0006508: proteolysis1.99E-02
150GO:0009785: blue light signaling pathway2.04E-02
151GO:0010229: inflorescence development2.04E-02
152GO:0030036: actin cytoskeleton organization2.04E-02
153GO:0010075: regulation of meristem growth2.04E-02
154GO:0006094: gluconeogenesis2.04E-02
155GO:0009767: photosynthetic electron transport chain2.04E-02
156GO:0006839: mitochondrial transport2.13E-02
157GO:0010540: basipetal auxin transport2.23E-02
158GO:0009266: response to temperature stimulus2.23E-02
159GO:0006302: double-strand break repair2.23E-02
160GO:0048440: carpel development2.23E-02
161GO:0010020: chloroplast fission2.23E-02
162GO:0090351: seedling development2.41E-02
163GO:0010114: response to red light2.41E-02
164GO:0046854: phosphatidylinositol phosphorylation2.41E-02
165GO:0080188: RNA-directed DNA methylation2.41E-02
166GO:0006863: purine nucleobase transport2.61E-02
167GO:0042753: positive regulation of circadian rhythm2.61E-02
168GO:0009636: response to toxic substance2.71E-02
169GO:0030150: protein import into mitochondrial matrix2.81E-02
170GO:0006338: chromatin remodeling2.81E-02
171GO:0051017: actin filament bundle assembly2.81E-02
172GO:0007010: cytoskeleton organization2.81E-02
173GO:0010187: negative regulation of seed germination2.81E-02
174GO:2000377: regulation of reactive oxygen species metabolic process2.81E-02
175GO:0019344: cysteine biosynthetic process2.81E-02
176GO:0009944: polarity specification of adaxial/abaxial axis2.81E-02
177GO:0010073: meristem maintenance3.01E-02
178GO:0006825: copper ion transport3.01E-02
179GO:0006418: tRNA aminoacylation for protein translation3.01E-02
180GO:0003333: amino acid transmembrane transport3.22E-02
181GO:0015992: proton transport3.22E-02
182GO:0009736: cytokinin-activated signaling pathway3.25E-02
183GO:0006364: rRNA processing3.25E-02
184GO:0051603: proteolysis involved in cellular protein catabolic process3.37E-02
185GO:0035428: hexose transmembrane transport3.44E-02
186GO:0006730: one-carbon metabolic process3.44E-02
187GO:0080092: regulation of pollen tube growth3.44E-02
188GO:0016226: iron-sulfur cluster assembly3.44E-02
189GO:0071215: cellular response to abscisic acid stimulus3.66E-02
190GO:0019722: calcium-mediated signaling3.88E-02
191GO:0048443: stamen development3.88E-02
192GO:0006284: base-excision repair3.88E-02
193GO:0070417: cellular response to cold4.11E-02
194GO:0010087: phloem or xylem histogenesis4.34E-02
195GO:0010118: stomatal movement4.34E-02
196GO:0010154: fruit development4.58E-02
197GO:0045489: pectin biosynthetic process4.58E-02
198GO:0048544: recognition of pollen4.82E-02
199GO:0042752: regulation of circadian rhythm4.82E-02
200GO:0007059: chromosome segregation4.82E-02
201GO:0009646: response to absence of light4.82E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
3GO:0046905: phytoene synthase activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
11GO:0019808: polyamine binding0.00E+00
12GO:0050613: delta14-sterol reductase activity0.00E+00
13GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
14GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
15GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
16GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
17GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity5.12E-04
18GO:0051996: squalene synthase activity5.12E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.12E-04
20GO:0004830: tryptophan-tRNA ligase activity5.12E-04
21GO:0003879: ATP phosphoribosyltransferase activity5.12E-04
22GO:0010347: L-galactose-1-phosphate phosphatase activity5.12E-04
23GO:0005227: calcium activated cation channel activity5.12E-04
24GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.12E-04
25GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity5.12E-04
26GO:0004813: alanine-tRNA ligase activity5.12E-04
27GO:0005290: L-histidine transmembrane transporter activity5.12E-04
28GO:0004008: copper-exporting ATPase activity5.12E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.10E-03
30GO:0050736: O-malonyltransferase activity1.10E-03
31GO:0009884: cytokinin receptor activity1.10E-03
32GO:0050017: L-3-cyanoalanine synthase activity1.10E-03
33GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.10E-03
34GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity1.10E-03
35GO:0004047: aminomethyltransferase activity1.10E-03
36GO:0004766: spermidine synthase activity1.10E-03
37GO:0052832: inositol monophosphate 3-phosphatase activity1.10E-03
38GO:0008805: carbon-monoxide oxygenase activity1.10E-03
39GO:0004829: threonine-tRNA ligase activity1.10E-03
40GO:0008934: inositol monophosphate 1-phosphatase activity1.10E-03
41GO:0052833: inositol monophosphate 4-phosphatase activity1.10E-03
42GO:0000064: L-ornithine transmembrane transporter activity1.10E-03
43GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.20E-03
44GO:0004805: trehalose-phosphatase activity1.33E-03
45GO:0005089: Rho guanyl-nucleotide exchange factor activity1.53E-03
46GO:0016805: dipeptidase activity1.80E-03
47GO:0005034: osmosensor activity1.80E-03
48GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.80E-03
49GO:0045548: phenylalanine ammonia-lyase activity1.80E-03
50GO:0003913: DNA photolyase activity1.80E-03
51GO:0032549: ribonucleoside binding1.80E-03
52GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.80E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.80E-03
54GO:0017172: cysteine dioxygenase activity2.61E-03
55GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.61E-03
56GO:0009882: blue light photoreceptor activity2.61E-03
57GO:0001872: (1->3)-beta-D-glucan binding2.61E-03
58GO:0015189: L-lysine transmembrane transporter activity2.61E-03
59GO:0000254: C-4 methylsterol oxidase activity2.61E-03
60GO:0005354: galactose transmembrane transporter activity2.61E-03
61GO:0009678: hydrogen-translocating pyrophosphatase activity2.61E-03
62GO:0015181: arginine transmembrane transporter activity2.61E-03
63GO:0004222: metalloendopeptidase activity2.70E-03
64GO:0042277: peptide binding3.52E-03
65GO:0046556: alpha-L-arabinofuranosidase activity3.52E-03
66GO:0001053: plastid sigma factor activity3.52E-03
67GO:0010011: auxin binding3.52E-03
68GO:0016987: sigma factor activity3.52E-03
69GO:0010328: auxin influx transmembrane transporter activity3.52E-03
70GO:0009044: xylan 1,4-beta-xylosidase activity3.52E-03
71GO:0010385: double-stranded methylated DNA binding3.52E-03
72GO:0005471: ATP:ADP antiporter activity4.52E-03
73GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.52E-03
74GO:0008725: DNA-3-methyladenine glycosylase activity4.52E-03
75GO:0030570: pectate lyase activity4.54E-03
76GO:2001070: starch binding5.60E-03
77GO:0005355: glucose transmembrane transporter activity6.73E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity6.75E-03
79GO:0019900: kinase binding6.75E-03
80GO:0004124: cysteine synthase activity6.75E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.75E-03
82GO:0008235: metalloexopeptidase activity7.99E-03
83GO:0004427: inorganic diphosphatase activity7.99E-03
84GO:0009881: photoreceptor activity7.99E-03
85GO:0004519: endonuclease activity8.26E-03
86GO:0004518: nuclease activity8.27E-03
87GO:0046872: metal ion binding8.29E-03
88GO:0043022: ribosome binding9.31E-03
89GO:0008237: metallopeptidase activity9.99E-03
90GO:0005375: copper ion transmembrane transporter activity1.07E-02
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.07E-02
92GO:0003747: translation release factor activity1.22E-02
93GO:0071949: FAD binding1.22E-02
94GO:0003723: RNA binding1.29E-02
95GO:0004673: protein histidine kinase activity1.53E-02
96GO:0005096: GTPase activator activity1.55E-02
97GO:0001054: RNA polymerase I activity1.69E-02
98GO:0004177: aminopeptidase activity1.69E-02
99GO:0000049: tRNA binding1.86E-02
100GO:0004871: signal transducer activity1.88E-02
101GO:0015266: protein channel activity2.04E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.04E-02
103GO:0000155: phosphorelay sensor kinase activity2.04E-02
104GO:0008017: microtubule binding2.18E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.23E-02
106GO:0008266: poly(U) RNA binding2.23E-02
107GO:0003924: GTPase activity2.39E-02
108GO:0004185: serine-type carboxypeptidase activity2.41E-02
109GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.61E-02
110GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.61E-02
111GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.61E-02
112GO:0042802: identical protein binding2.78E-02
113GO:0031418: L-ascorbic acid binding2.81E-02
114GO:0043424: protein histidine kinase binding3.01E-02
115GO:0005345: purine nucleobase transmembrane transporter activity3.01E-02
116GO:0030246: carbohydrate binding3.17E-02
117GO:0004176: ATP-dependent peptidase activity3.22E-02
118GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.25E-02
119GO:0003777: microtubule motor activity3.60E-02
120GO:0004812: aminoacyl-tRNA ligase activity4.11E-02
121GO:0004402: histone acetyltransferase activity4.34E-02
122GO:0004527: exonuclease activity4.58E-02
123GO:0008536: Ran GTPase binding4.58E-02
124GO:0001085: RNA polymerase II transcription factor binding4.58E-02
125GO:0010181: FMN binding4.82E-02
126GO:0050662: coenzyme binding4.82E-02
127GO:0004672: protein kinase activity4.97E-02
RankGO TermAdjusted P value
1GO:0042597: periplasmic space0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0035452: extrinsic component of plastid membrane0.00E+00
4GO:0009507: chloroplast4.89E-14
5GO:0009570: chloroplast stroma7.40E-04
6GO:0009513: etioplast1.10E-03
7GO:0030529: intracellular ribonucleoprotein complex1.69E-03
8GO:0009509: chromoplast1.80E-03
9GO:0016605: PML body1.80E-03
10GO:0005578: proteinaceous extracellular matrix2.00E-03
11GO:0009574: preprophase band2.00E-03
12GO:0032432: actin filament bundle2.61E-03
13GO:0030663: COPI-coated vesicle membrane3.52E-03
14GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)3.52E-03
15GO:0009535: chloroplast thylakoid membrane3.75E-03
16GO:0005871: kinesin complex5.36E-03
17GO:0031209: SCAR complex5.60E-03
18GO:0009505: plant-type cell wall5.69E-03
19GO:0009986: cell surface7.99E-03
20GO:0031305: integral component of mitochondrial inner membrane9.31E-03
21GO:0009501: amyloplast9.31E-03
22GO:0009706: chloroplast inner membrane1.03E-02
23GO:0005736: DNA-directed RNA polymerase I complex1.22E-02
24GO:0016604: nuclear body1.37E-02
25GO:0030125: clathrin vesicle coat1.53E-02
26GO:0016324: apical plasma membrane1.53E-02
27GO:0005884: actin filament1.69E-02
28GO:0000311: plastid large ribosomal subunit1.86E-02
29GO:0016602: CCAAT-binding factor complex2.04E-02
30GO:0005886: plasma membrane2.16E-02
31GO:0030176: integral component of endoplasmic reticulum membrane2.41E-02
32GO:0009532: plastid stroma3.22E-02
33GO:0009536: plastid3.59E-02
34GO:0005744: mitochondrial inner membrane presequence translocase complex3.88E-02
35GO:0031225: anchored component of membrane4.05E-02
36GO:0005874: microtubule4.44E-02
37GO:0005770: late endosome4.58E-02
38GO:0031969: chloroplast membrane4.63E-02
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Gene type



Gene DE type