Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0015717: triose phosphate transport0.00E+00
8GO:0015979: photosynthesis4.22E-13
9GO:0009773: photosynthetic electron transport in photosystem I1.11E-08
10GO:0032544: plastid translation1.65E-07
11GO:0015995: chlorophyll biosynthetic process1.99E-07
12GO:0010114: response to red light2.33E-05
13GO:0071484: cellular response to light intensity3.55E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.55E-05
15GO:0019464: glycine decarboxylation via glycine cleavage system6.35E-05
16GO:0006546: glycine catabolic process6.35E-05
17GO:0010207: photosystem II assembly7.33E-05
18GO:0009768: photosynthesis, light harvesting in photosystem I1.40E-04
19GO:0010190: cytochrome b6f complex assembly1.45E-04
20GO:0009853: photorespiration1.64E-04
21GO:1901259: chloroplast rRNA processing1.97E-04
22GO:0031998: regulation of fatty acid beta-oxidation3.14E-04
23GO:0034337: RNA folding3.14E-04
24GO:0046467: membrane lipid biosynthetic process3.14E-04
25GO:0015671: oxygen transport3.14E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.14E-04
27GO:0019544: arginine catabolic process to glutamate3.14E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.14E-04
29GO:0042371: vitamin K biosynthetic process3.14E-04
30GO:0080093: regulation of photorespiration3.14E-04
31GO:0009735: response to cytokinin3.16E-04
32GO:0009657: plastid organization3.98E-04
33GO:0006810: transport4.60E-04
34GO:0006783: heme biosynthetic process4.78E-04
35GO:0006949: syncytium formation6.60E-04
36GO:0006782: protoporphyrinogen IX biosynthetic process6.60E-04
37GO:0006729: tetrahydrobiopterin biosynthetic process6.87E-04
38GO:0010198: synergid death6.87E-04
39GO:0051645: Golgi localization6.87E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process6.87E-04
41GO:0071457: cellular response to ozone6.87E-04
42GO:0060151: peroxisome localization6.87E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation7.62E-04
44GO:0018298: protein-chromophore linkage9.50E-04
45GO:0009767: photosynthetic electron transport chain9.84E-04
46GO:0010143: cutin biosynthetic process1.11E-03
47GO:0009405: pathogenesis1.11E-03
48GO:0051646: mitochondrion localization1.11E-03
49GO:0090391: granum assembly1.11E-03
50GO:0090436: leaf pavement cell development1.11E-03
51GO:0035436: triose phosphate transmembrane transport1.11E-03
52GO:0006020: inositol metabolic process1.60E-03
53GO:0009152: purine ribonucleotide biosynthetic process1.60E-03
54GO:0046653: tetrahydrofolate metabolic process1.60E-03
55GO:0009052: pentose-phosphate shunt, non-oxidative branch1.60E-03
56GO:0010731: protein glutathionylation1.60E-03
57GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.60E-03
58GO:0055114: oxidation-reduction process1.77E-03
59GO:0061077: chaperone-mediated protein folding1.84E-03
60GO:0009739: response to gibberellin1.92E-03
61GO:0006412: translation2.00E-03
62GO:0071486: cellular response to high light intensity2.14E-03
63GO:0009765: photosynthesis, light harvesting2.14E-03
64GO:0045727: positive regulation of translation2.14E-03
65GO:0015994: chlorophyll metabolic process2.14E-03
66GO:0015713: phosphoglycerate transport2.14E-03
67GO:0006021: inositol biosynthetic process2.14E-03
68GO:0006465: signal peptide processing2.74E-03
69GO:0071493: cellular response to UV-B2.74E-03
70GO:0006564: L-serine biosynthetic process2.74E-03
71GO:0010236: plastoquinone biosynthetic process2.74E-03
72GO:0006097: glyoxylate cycle2.74E-03
73GO:0042254: ribosome biogenesis3.24E-03
74GO:0006751: glutathione catabolic process3.38E-03
75GO:0042549: photosystem II stabilization3.38E-03
76GO:1902456: regulation of stomatal opening3.38E-03
77GO:0046855: inositol phosphate dephosphorylation3.38E-03
78GO:0009643: photosynthetic acclimation3.38E-03
79GO:0009955: adaxial/abaxial pattern specification4.06E-03
80GO:0010189: vitamin E biosynthetic process4.06E-03
81GO:0009854: oxidative photosynthetic carbon pathway4.06E-03
82GO:0009828: plant-type cell wall loosening4.50E-03
83GO:0009772: photosynthetic electron transport in photosystem II4.80E-03
84GO:0009769: photosynthesis, light harvesting in photosystem II4.80E-03
85GO:0009645: response to low light intensity stimulus4.80E-03
86GO:0009416: response to light stimulus5.37E-03
87GO:0010027: thylakoid membrane organization5.37E-03
88GO:0048564: photosystem I assembly5.57E-03
89GO:0009642: response to light intensity5.57E-03
90GO:0071482: cellular response to light stimulus6.39E-03
91GO:0019430: removal of superoxide radicals6.39E-03
92GO:0006098: pentose-phosphate shunt7.24E-03
93GO:0019432: triglyceride biosynthetic process7.24E-03
94GO:0010206: photosystem II repair7.24E-03
95GO:0010218: response to far red light7.74E-03
96GO:0005982: starch metabolic process8.14E-03
97GO:0006779: porphyrin-containing compound biosynthetic process8.14E-03
98GO:0009637: response to blue light8.90E-03
99GO:0045036: protein targeting to chloroplast9.07E-03
100GO:0034599: cellular response to oxidative stress9.31E-03
101GO:0019684: photosynthesis, light reaction1.00E-02
102GO:0043085: positive regulation of catalytic activity1.00E-02
103GO:0006415: translational termination1.00E-02
104GO:0000272: polysaccharide catabolic process1.00E-02
105GO:0009409: response to cold1.07E-02
106GO:0006790: sulfur compound metabolic process1.11E-02
107GO:0016024: CDP-diacylglycerol biosynthetic process1.11E-02
108GO:0006094: gluconeogenesis1.21E-02
109GO:0030048: actin filament-based movement1.21E-02
110GO:0006108: malate metabolic process1.21E-02
111GO:0048467: gynoecium development1.32E-02
112GO:0019253: reductive pentose-phosphate cycle1.32E-02
113GO:0046686: response to cadmium ion1.41E-02
114GO:0009658: chloroplast organization1.41E-02
115GO:0046854: phosphatidylinositol phosphorylation1.43E-02
116GO:0009664: plant-type cell wall organization1.45E-02
117GO:0006364: rRNA processing1.55E-02
118GO:0006418: tRNA aminoacylation for protein translation1.78E-02
119GO:0007017: microtubule-based process1.78E-02
120GO:0006096: glycolytic process1.84E-02
121GO:0080167: response to karrikin1.85E-02
122GO:0048367: shoot system development1.90E-02
123GO:0019915: lipid storage1.91E-02
124GO:0009269: response to desiccation1.91E-02
125GO:0030245: cellulose catabolic process2.03E-02
126GO:0016226: iron-sulfur cluster assembly2.03E-02
127GO:0009740: gibberellic acid mediated signaling pathway2.09E-02
128GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.16E-02
129GO:0009686: gibberellin biosynthetic process2.16E-02
130GO:0016117: carotenoid biosynthetic process2.43E-02
131GO:0010118: stomatal movement2.57E-02
132GO:0042631: cellular response to water deprivation2.57E-02
133GO:0006869: lipid transport2.61E-02
134GO:0010268: brassinosteroid homeostasis2.71E-02
135GO:0071472: cellular response to salt stress2.71E-02
136GO:0010154: fruit development2.71E-02
137GO:0006662: glycerol ether metabolic process2.71E-02
138GO:0015986: ATP synthesis coupled proton transport2.85E-02
139GO:0032259: methylation2.86E-02
140GO:0009791: post-embryonic development3.00E-02
141GO:0019252: starch biosynthetic process3.00E-02
142GO:0016132: brassinosteroid biosynthetic process3.15E-02
143GO:0032502: developmental process3.30E-02
144GO:0010090: trichome morphogenesis3.45E-02
145GO:0016125: sterol metabolic process3.61E-02
146GO:0005975: carbohydrate metabolic process3.67E-02
147GO:0042128: nitrate assimilation4.42E-02
148GO:0016311: dephosphorylation4.76E-02
149GO:0016049: cell growth4.76E-02
150GO:0009817: defense response to fungus, incompatible interaction4.93E-02
151GO:0048481: plant ovule development4.93E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0004822: isoleucine-tRNA ligase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0046408: chlorophyll synthetase activity0.00E+00
5GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0019843: rRNA binding1.49E-10
8GO:0005528: FK506 binding4.59E-06
9GO:0004375: glycine dehydrogenase (decarboxylating) activity3.55E-05
10GO:0016851: magnesium chelatase activity3.55E-05
11GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.35E-05
12GO:0016168: chlorophyll binding7.26E-05
13GO:0003735: structural constituent of ribosome9.42E-05
14GO:0031409: pigment binding1.04E-04
15GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.97E-04
16GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.14E-04
17GO:0005344: oxygen transporter activity3.14E-04
18GO:0051777: ent-kaurenoate oxidase activity3.14E-04
19GO:0004856: xylulokinase activity3.14E-04
20GO:0004853: uroporphyrinogen decarboxylase activity3.14E-04
21GO:0009374: biotin binding3.14E-04
22GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.14E-04
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.26E-04
24GO:0004618: phosphoglycerate kinase activity6.87E-04
25GO:0010297: heteropolysaccharide binding6.87E-04
26GO:0003839: gamma-glutamylcyclotransferase activity6.87E-04
27GO:0004617: phosphoglycerate dehydrogenase activity6.87E-04
28GO:0004047: aminomethyltransferase activity6.87E-04
29GO:0052832: inositol monophosphate 3-phosphatase activity6.87E-04
30GO:0033201: alpha-1,4-glucan synthase activity6.87E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.87E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity6.87E-04
33GO:0016630: protochlorophyllide reductase activity6.87E-04
34GO:0008883: glutamyl-tRNA reductase activity6.87E-04
35GO:0047746: chlorophyllase activity6.87E-04
36GO:0031072: heat shock protein binding9.84E-04
37GO:0004373: glycogen (starch) synthase activity1.11E-03
38GO:0050734: hydroxycinnamoyltransferase activity1.11E-03
39GO:0002161: aminoacyl-tRNA editing activity1.11E-03
40GO:0090729: toxin activity1.11E-03
41GO:0004751: ribose-5-phosphate isomerase activity1.11E-03
42GO:0045174: glutathione dehydrogenase (ascorbate) activity1.11E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.11E-03
44GO:0071917: triose-phosphate transmembrane transporter activity1.11E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.11E-03
46GO:0016149: translation release factor activity, codon specific1.60E-03
47GO:0008453: alanine-glyoxylate transaminase activity2.14E-03
48GO:0045430: chalcone isomerase activity2.14E-03
49GO:0009011: starch synthase activity2.14E-03
50GO:0043495: protein anchor2.14E-03
51GO:0015120: phosphoglycerate transmembrane transporter activity2.14E-03
52GO:0042802: identical protein binding2.33E-03
53GO:0003989: acetyl-CoA carboxylase activity2.74E-03
54GO:0003959: NADPH dehydrogenase activity2.74E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor2.74E-03
56GO:0004332: fructose-bisphosphate aldolase activity3.38E-03
57GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.38E-03
58GO:0004784: superoxide dismutase activity3.38E-03
59GO:0016615: malate dehydrogenase activity3.38E-03
60GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.38E-03
61GO:0016491: oxidoreductase activity3.40E-03
62GO:0048038: quinone binding3.72E-03
63GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.06E-03
64GO:0030060: L-malate dehydrogenase activity4.06E-03
65GO:0019899: enzyme binding4.80E-03
66GO:0005509: calcium ion binding5.07E-03
67GO:0003747: translation release factor activity7.24E-03
68GO:0009055: electron carrier activity8.78E-03
69GO:0008047: enzyme activator activity9.07E-03
70GO:0047372: acylglycerol lipase activity1.00E-02
71GO:0008378: galactosyltransferase activity1.11E-02
72GO:0000049: tRNA binding1.11E-02
73GO:0004565: beta-galactosidase activity1.21E-02
74GO:0004022: alcohol dehydrogenase (NAD) activity1.21E-02
75GO:0051537: 2 iron, 2 sulfur cluster binding1.25E-02
76GO:0003774: motor activity1.32E-02
77GO:0008266: poly(U) RNA binding1.32E-02
78GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.32E-02
79GO:0008168: methyltransferase activity1.34E-02
80GO:0051536: iron-sulfur cluster binding1.66E-02
81GO:0022891: substrate-specific transmembrane transporter activity2.16E-02
82GO:0008810: cellulase activity2.16E-02
83GO:0051082: unfolded protein binding2.22E-02
84GO:0003727: single-stranded RNA binding2.29E-02
85GO:0004812: aminoacyl-tRNA ligase activity2.43E-02
86GO:0047134: protein-disulfide reductase activity2.43E-02
87GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.71E-02
88GO:0004791: thioredoxin-disulfide reductase activity2.85E-02
89GO:0016853: isomerase activity2.85E-02
90GO:0050662: coenzyme binding2.85E-02
91GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.45E-02
92GO:0016791: phosphatase activity3.61E-02
93GO:0008483: transaminase activity3.77E-02
94GO:0016722: oxidoreductase activity, oxidizing metal ions3.77E-02
95GO:0005200: structural constituent of cytoskeleton3.77E-02
96GO:0020037: heme binding3.91E-02
97GO:0016597: amino acid binding3.92E-02
98GO:0003743: translation initiation factor activity4.46E-02
99GO:0008289: lipid binding4.54E-02
100GO:0004721: phosphoprotein phosphatase activity4.59E-02
101GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.76E-02
102GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.93E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
4GO:0009507: chloroplast5.70E-54
5GO:0009535: chloroplast thylakoid membrane1.99E-31
6GO:0009941: chloroplast envelope7.83E-25
7GO:0009579: thylakoid7.41E-24
8GO:0009570: chloroplast stroma1.75E-21
9GO:0009534: chloroplast thylakoid4.29E-21
10GO:0009543: chloroplast thylakoid lumen1.70E-16
11GO:0031977: thylakoid lumen9.85E-13
12GO:0009654: photosystem II oxygen evolving complex2.87E-11
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.46E-09
14GO:0005840: ribosome1.38E-08
15GO:0019898: extrinsic component of membrane2.73E-08
16GO:0030095: chloroplast photosystem II3.64E-08
17GO:0010287: plastoglobule1.51E-05
18GO:0010007: magnesium chelatase complex1.59E-05
19GO:0005960: glycine cleavage complex3.55E-05
20GO:0030076: light-harvesting complex8.78E-05
21GO:0031969: chloroplast membrane2.04E-04
22GO:0048046: apoplast2.42E-04
23GO:0005787: signal peptidase complex3.14E-04
24GO:0009547: plastid ribosome3.14E-04
25GO:0009522: photosystem I3.54E-04
26GO:0009523: photosystem II3.89E-04
27GO:0010319: stromule5.88E-04
28GO:0000427: plastid-encoded plastid RNA polymerase complex6.87E-04
29GO:0009317: acetyl-CoA carboxylase complex1.11E-03
30GO:0042651: thylakoid membrane1.68E-03
31GO:0009517: PSII associated light-harvesting complex II2.14E-03
32GO:0016020: membrane2.68E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.38E-03
34GO:0009706: chloroplast inner membrane4.03E-03
35GO:0009501: amyloplast5.57E-03
36GO:0005618: cell wall5.95E-03
37GO:0009539: photosystem II reaction center6.39E-03
38GO:0005763: mitochondrial small ribosomal subunit7.24E-03
39GO:0045298: tubulin complex7.24E-03
40GO:0016459: myosin complex9.07E-03
41GO:0000311: plastid large ribosomal subunit1.11E-02
42GO:0032040: small-subunit processome1.11E-02
43GO:0009508: plastid chromosome1.21E-02
44GO:0043234: protein complex1.54E-02
45GO:0015935: small ribosomal subunit1.91E-02
46GO:0005777: peroxisome2.30E-02
47GO:0005623: cell2.85E-02
48GO:0009295: nucleoid3.77E-02
49GO:0009707: chloroplast outer membrane4.93E-02
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Gene type



Gene DE type