co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
5	GO:1905157: positive regulation of photosynthesis	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0009773: photosynthetic electron transport in photosystem I	2.57E-08
12	GO:0015995: chlorophyll biosynthetic process	5.17E-07
13	GO:1901259: chloroplast rRNA processing	6.21E-06
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.10E-05
15	GO:0071484: cellular response to light intensity	5.10E-05
16	GO:0015994: chlorophyll metabolic process	9.01E-05
17	GO:0015979: photosynthesis	1.06E-04
18	GO:0010207: photosystem II assembly	1.15E-04
19	GO:0009955: adaxial/abaxial pattern specification	2.71E-04
20	GO:1905039: carboxylic acid transmembrane transport	3.86E-04
21	GO:1905200: gibberellic acid transmembrane transport	3.86E-04
22	GO:0042371: vitamin K biosynthetic process	3.86E-04
23	GO:0043686: co-translational protein modification	3.86E-04
24	GO:0043007: maintenance of rDNA	3.86E-04
25	GO:0010028: xanthophyll cycle	3.86E-04
26	GO:0034337: RNA folding	3.86E-04
27	GO:0080112: seed growth	3.86E-04
28	GO:0000476: maturation of 4.5S rRNA	3.86E-04
29	GO:0000967: rRNA 5'-end processing	3.86E-04
30	GO:0006353: DNA-templated transcription, termination	4.40E-04
31	GO:0009657: plastid organization	5.37E-04
32	GO:0032544: plastid translation	5.37E-04
33	GO:0032502: developmental process	6.81E-04
34	GO:0006898: receptor-mediated endocytosis	8.38E-04
35	GO:0071457: cellular response to ozone	8.38E-04
36	GO:0018026: peptidyl-lysine monomethylation	8.38E-04
37	GO:1904143: positive regulation of carotenoid biosynthetic process	8.38E-04
38	GO:0016122: xanthophyll metabolic process	8.38E-04
39	GO:0034470: ncRNA processing	8.38E-04
40	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.38E-04
41	GO:0006782: protoporphyrinogen IX biosynthetic process	8.85E-04
42	GO:0009658: chloroplast organization	1.16E-03
43	GO:0090391: granum assembly	1.36E-03
44	GO:0006696: ergosterol biosynthetic process	1.36E-03
45	GO:0010731: protein glutathionylation	1.96E-03
46	GO:0006168: adenine salvage	1.96E-03
47	GO:1902358: sulfate transmembrane transport	1.96E-03
48	GO:0045338: farnesyl diphosphate metabolic process	1.96E-03
49	GO:0006166: purine ribonucleoside salvage	1.96E-03
50	GO:0006020: inositol metabolic process	1.96E-03
51	GO:0009152: purine ribonucleotide biosynthetic process	1.96E-03
52	GO:0010601: positive regulation of auxin biosynthetic process	1.96E-03
53	GO:0046653: tetrahydrofolate metabolic process	1.96E-03
54	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.96E-03
55	GO:0009768: photosynthesis, light harvesting in photosystem I	2.27E-03
56	GO:0061077: chaperone-mediated protein folding	2.49E-03
57	GO:0010114: response to red light	2.60E-03
58	GO:0006021: inositol biosynthetic process	2.63E-03
59	GO:0071483: cellular response to blue light	2.63E-03
60	GO:0071486: cellular response to high light intensity	2.63E-03
61	GO:0009765: photosynthesis, light harvesting	2.63E-03
62	GO:0022622: root system development	2.63E-03
63	GO:0010107: potassium ion import	2.63E-03
64	GO:0006656: phosphatidylcholine biosynthetic process	3.37E-03
65	GO:0098719: sodium ion import across plasma membrane	3.37E-03
66	GO:0006564: L-serine biosynthetic process	3.37E-03
67	GO:0009904: chloroplast accumulation movement	3.37E-03
68	GO:0010236: plastoquinone biosynthetic process	3.37E-03
69	GO:0031365: N-terminal protein amino acid modification	3.37E-03
70	GO:0044209: AMP salvage	3.37E-03
71	GO:0071493: cellular response to UV-B	3.37E-03
72	GO:0055114: oxidation-reduction process	3.45E-03
73	GO:0009958: positive gravitropism	4.09E-03
74	GO:1902456: regulation of stomatal opening	4.17E-03
75	GO:0010190: cytochrome b6f complex assembly	4.17E-03
76	GO:0000741: karyogamy	4.17E-03
77	GO:0009228: thiamine biosynthetic process	4.17E-03
78	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.17E-03
79	GO:0046855: inositol phosphate dephosphorylation	4.17E-03
80	GO:0009643: photosynthetic acclimation	4.17E-03
81	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.17E-03
82	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.17E-03
83	GO:0048280: vesicle fusion with Golgi apparatus	5.02E-03
84	GO:0009903: chloroplast avoidance movement	5.02E-03
85	GO:0071333: cellular response to glucose stimulus	5.02E-03
86	GO:0042372: phylloquinone biosynthetic process	5.02E-03
87	GO:1901657: glycosyl compound metabolic process	5.75E-03
88	GO:0008272: sulfate transport	5.94E-03
89	GO:0009769: photosynthesis, light harvesting in photosystem II	5.94E-03
90	GO:0009645: response to low light intensity stimulus	5.94E-03
91	GO:0032880: regulation of protein localization	5.94E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	5.94E-03
93	GO:1900056: negative regulation of leaf senescence	5.94E-03
94	GO:0048437: floral organ development	5.94E-03
95	GO:0010196: nonphotochemical quenching	5.94E-03
96	GO:0042255: ribosome assembly	6.90E-03
97	GO:0010078: maintenance of root meristem identity	6.90E-03
98	GO:0055075: potassium ion homeostasis	6.90E-03
99	GO:0052543: callose deposition in cell wall	6.90E-03
100	GO:0048564: photosystem I assembly	6.90E-03
101	GO:0080167: response to karrikin	6.98E-03
102	GO:0016126: sterol biosynthetic process	7.31E-03
103	GO:0043562: cellular response to nitrogen levels	7.92E-03
104	GO:0015996: chlorophyll catabolic process	7.92E-03
105	GO:0019430: removal of superoxide radicals	7.92E-03
106	GO:0006810: transport	8.40E-03
107	GO:0010206: photosystem II repair	8.99E-03
108	GO:0090333: regulation of stomatal closure	8.99E-03
109	GO:0006783: heme biosynthetic process	8.99E-03
110	GO:0046685: response to arsenic-containing substance	8.99E-03
111	GO:0006098: pentose-phosphate shunt	8.99E-03
112	GO:0009821: alkaloid biosynthetic process	8.99E-03
113	GO:0051453: regulation of intracellular pH	1.01E-02
114	GO:0005982: starch metabolic process	1.01E-02
115	GO:0009638: phototropism	1.01E-02
116	GO:0009813: flavonoid biosynthetic process	1.01E-02
117	GO:0006779: porphyrin-containing compound biosynthetic process	1.01E-02
118	GO:0010380: regulation of chlorophyll biosynthetic process	1.01E-02
119	GO:0048527: lateral root development	1.11E-02
120	GO:0009641: shade avoidance	1.13E-02
121	GO:0006896: Golgi to vacuole transport	1.13E-02
122	GO:0032259: methylation	1.18E-02
123	GO:0015770: sucrose transport	1.25E-02
124	GO:0072593: reactive oxygen species metabolic process	1.25E-02
125	GO:0006415: translational termination	1.25E-02
126	GO:0009684: indoleacetic acid biosynthetic process	1.25E-02
127	GO:0016024: CDP-diacylglycerol biosynthetic process	1.38E-02
128	GO:0006790: sulfur compound metabolic process	1.38E-02
129	GO:0006094: gluconeogenesis	1.51E-02
130	GO:0010588: cotyledon vascular tissue pattern formation	1.51E-02
131	GO:2000012: regulation of auxin polar transport	1.51E-02
132	GO:0007015: actin filament organization	1.64E-02
133	GO:0010223: secondary shoot formation	1.64E-02
134	GO:0048467: gynoecium development	1.64E-02
135	GO:0010143: cutin biosynthetic process	1.64E-02
136	GO:0019853: L-ascorbic acid biosynthetic process	1.78E-02
137	GO:0046854: phosphatidylinositol phosphorylation	1.78E-02
138	GO:0009901: anther dehiscence	1.78E-02
139	GO:0006636: unsaturated fatty acid biosynthetic process	1.92E-02
140	GO:0006364: rRNA processing	2.12E-02
141	GO:0006418: tRNA aminoacylation for protein translation	2.22E-02
142	GO:0016114: terpenoid biosynthetic process	2.37E-02
143	GO:0019915: lipid storage	2.37E-02
144	GO:0009269: response to desiccation	2.37E-02
145	GO:0006730: one-carbon metabolic process	2.53E-02
146	GO:0030433: ubiquitin-dependent ERAD pathway	2.53E-02
147	GO:0019748: secondary metabolic process	2.53E-02
148	GO:0016226: iron-sulfur cluster assembly	2.53E-02
149	GO:0048367: shoot system development	2.59E-02
150	GO:0006012: galactose metabolic process	2.69E-02
151	GO:0071215: cellular response to abscisic acid stimulus	2.69E-02
152	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.85E-02
153	GO:0009306: protein secretion	2.86E-02
154	GO:0009416: response to light stimulus	2.96E-02
155	GO:0008284: positive regulation of cell proliferation	3.03E-02
156	GO:0016117: carotenoid biosynthetic process	3.03E-02
157	GO:0042147: retrograde transport, endosome to Golgi	3.03E-02
158	GO:0080022: primary root development	3.20E-02
159	GO:0010087: phloem or xylem histogenesis	3.20E-02
160	GO:0010197: polar nucleus fusion	3.38E-02
161	GO:0009741: response to brassinosteroid	3.38E-02
162	GO:0006885: regulation of pH	3.38E-02
163	GO:0071472: cellular response to salt stress	3.38E-02
164	GO:0006814: sodium ion transport	3.55E-02
165	GO:0009646: response to absence of light	3.55E-02
166	GO:0048825: cotyledon development	3.74E-02
167	GO:0019252: starch biosynthetic process	3.74E-02
168	GO:0009556: microsporogenesis	3.74E-02
169	GO:0009851: auxin biosynthetic process	3.74E-02
170	GO:0006623: protein targeting to vacuole	3.74E-02
171	GO:0006891: intra-Golgi vesicle-mediated transport	3.92E-02
172	GO:0009058: biosynthetic process	3.98E-02
173	GO:0009630: gravitropism	4.11E-02
174	GO:0016042: lipid catabolic process	4.27E-02
175	GO:0006413: translational initiation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0090711: FMN hydrolase activity	0.00E+00
9	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
10	GO:0019843: rRNA binding	3.99E-05
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.01E-05
12	GO:0005528: FK506 binding	1.87E-04
13	GO:0004853: uroporphyrinogen decarboxylase activity	3.86E-04
14	GO:0042586: peptide deformylase activity	3.86E-04
15	GO:0034256: chlorophyll(ide) b reductase activity	3.86E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.86E-04
17	GO:0045486: naringenin 3-dioxygenase activity	3.86E-04
18	GO:1905201: gibberellin transmembrane transporter activity	3.86E-04
19	GO:0004856: xylulokinase activity	3.86E-04
20	GO:0071949: FAD binding	6.44E-04
21	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.38E-04
22	GO:0016630: protochlorophyllide reductase activity	8.38E-04
23	GO:0019172: glyoxalase III activity	8.38E-04
24	GO:0008967: phosphoglycolate phosphatase activity	8.38E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.38E-04
26	GO:0000234: phosphoethanolamine N-methyltransferase activity	8.38E-04
27	GO:0047746: chlorophyllase activity	8.38E-04
28	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.38E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	8.38E-04
30	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	8.38E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	8.38E-04
32	GO:0033201: alpha-1,4-glucan synthase activity	8.38E-04
33	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.38E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	8.38E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	8.38E-04
36	GO:0015386: potassium:proton antiporter activity	1.02E-03
37	GO:0004751: ribose-5-phosphate isomerase activity	1.36E-03
38	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.36E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.36E-03
40	GO:0008864: formyltetrahydrofolate deformylase activity	1.36E-03
41	GO:0004373: glycogen (starch) synthase activity	1.36E-03
42	GO:0002161: aminoacyl-tRNA editing activity	1.36E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.36E-03
44	GO:0031409: pigment binding	1.85E-03
45	GO:0003999: adenine phosphoribosyltransferase activity	1.96E-03
46	GO:0016149: translation release factor activity, codon specific	1.96E-03
47	GO:0016851: magnesium chelatase activity	1.96E-03
48	GO:0022890: inorganic cation transmembrane transporter activity	1.96E-03
49	GO:0016491: oxidoreductase activity	2.31E-03
50	GO:0009011: starch synthase activity	2.63E-03
51	GO:0004659: prenyltransferase activity	2.63E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	2.63E-03
53	GO:0045430: chalcone isomerase activity	2.63E-03
54	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.16E-03
55	GO:0003727: single-stranded RNA binding	3.24E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.37E-03
57	GO:0016846: carbon-sulfur lyase activity	3.37E-03
58	GO:0003959: NADPH dehydrogenase activity	3.37E-03
59	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.17E-03
60	GO:0004784: superoxide dismutase activity	4.17E-03
61	GO:0004462: lactoylglutathione lyase activity	4.17E-03
62	GO:0015081: sodium ion transmembrane transporter activity	4.17E-03
63	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.17E-03
64	GO:0004332: fructose-bisphosphate aldolase activity	4.17E-03
65	GO:0004629: phospholipase C activity	4.17E-03
66	GO:0004435: phosphatidylinositol phospholipase C activity	5.02E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.02E-03
68	GO:0048038: quinone binding	5.05E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	6.90E-03
70	GO:0016168: chlorophyll binding	7.73E-03
71	GO:0008271: secondary active sulfate transmembrane transporter activity	7.92E-03
72	GO:0102483: scopolin beta-glucosidase activity	8.62E-03
73	GO:0003747: translation release factor activity	8.99E-03
74	GO:0016844: strictosidine synthase activity	1.01E-02
75	GO:0008515: sucrose transmembrane transporter activity	1.25E-02
76	GO:0008559: xenobiotic-transporting ATPase activity	1.25E-02
77	GO:0047372: acylglycerol lipase activity	1.25E-02
78	GO:0003993: acid phosphatase activity	1.27E-02
79	GO:0008422: beta-glucosidase activity	1.33E-02
80	GO:0000049: tRNA binding	1.38E-02
81	GO:0015116: sulfate transmembrane transporter activity	1.38E-02
82	GO:0003743: translation initiation factor activity	1.46E-02
83	GO:0004022: alcohol dehydrogenase (NAD) activity	1.51E-02
84	GO:0004089: carbonate dehydratase activity	1.51E-02
85	GO:0031072: heat shock protein binding	1.51E-02
86	GO:0003725: double-stranded RNA binding	1.51E-02
87	GO:0008266: poly(U) RNA binding	1.64E-02
88	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.64E-02
89	GO:0008083: growth factor activity	1.64E-02
90	GO:0043621: protein self-association	1.70E-02
91	GO:0051119: sugar transmembrane transporter activity	1.78E-02
92	GO:0008168: methyltransferase activity	1.99E-02
93	GO:0051536: iron-sulfur cluster binding	2.07E-02
94	GO:0031418: L-ascorbic acid binding	2.07E-02
95	GO:0015079: potassium ion transmembrane transporter activity	2.22E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	3.03E-02
97	GO:0003713: transcription coactivator activity	3.38E-02
98	GO:0015299: solute:proton antiporter activity	3.55E-02
99	GO:0004252: serine-type endopeptidase activity	4.19E-02
100	GO:0015385: sodium:proton antiporter activity	4.30E-02
101	GO:0016791: phosphatase activity	4.49E-02
102	GO:0008565: protein transporter activity	4.51E-02
103	GO:0016787: hydrolase activity	4.53E-02
104	GO:0008237: metallopeptidase activity	4.69E-02
105	GO:0009055: electron carrier activity	4.81E-02
106	GO:0016597: amino acid binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.77E-39
3	GO:0009535: chloroplast thylakoid membrane	3.06E-24
4	GO:0009570: chloroplast stroma	1.61E-16
5	GO:0009534: chloroplast thylakoid	9.48E-15
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.48E-11
7	GO:0031977: thylakoid lumen	1.58E-10
8	GO:0009579: thylakoid	2.42E-10
9	GO:0009543: chloroplast thylakoid lumen	6.81E-10
10	GO:0031969: chloroplast membrane	8.19E-08
11	GO:0009941: chloroplast envelope	1.21E-06
12	GO:0030095: chloroplast photosystem II	1.15E-04
13	GO:0009654: photosystem II oxygen evolving complex	2.16E-04
14	GO:0009547: plastid ribosome	3.86E-04
15	GO:0019898: extrinsic component of membrane	5.74E-04
16	GO:0033281: TAT protein transport complex	1.36E-03
17	GO:0010007: magnesium chelatase complex	1.36E-03
18	GO:0010287: plastoglobule	1.45E-03
19	GO:0030076: light-harvesting complex	1.66E-03
20	GO:0042651: thylakoid membrane	2.27E-03
21	GO:0009517: PSII associated light-harvesting complex II	2.63E-03
22	GO:0009840: chloroplastic endopeptidase Clp complex	5.02E-03
23	GO:0031982: vesicle	6.90E-03
24	GO:0012507: ER to Golgi transport vesicle membrane	6.90E-03
25	GO:0009501: amyloplast	6.90E-03
26	GO:0005763: mitochondrial small ribosomal subunit	8.99E-03
27	GO:0005840: ribosome	1.19E-02
28	GO:0000311: plastid large ribosomal subunit	1.38E-02
29	GO:0032040: small-subunit processome	1.38E-02
30	GO:0009508: plastid chromosome	1.51E-02
31	GO:0009532: plastid stroma	2.37E-02
32	GO:0015935: small ribosomal subunit	2.37E-02
33	GO:0009522: photosystem I	3.55E-02
34	GO:0009523: photosystem II	3.74E-02
35	GO:0009295: nucleoid	4.69E-02