Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01810

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0016118: carotenoid catabolic process0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
10GO:0015995: chlorophyll biosynthetic process2.47E-11
11GO:0015979: photosynthesis1.91E-09
12GO:0009773: photosynthetic electron transport in photosystem I3.76E-08
13GO:0010207: photosystem II assembly5.63E-06
14GO:0032544: plastid translation2.64E-05
15GO:0090391: granum assembly2.76E-05
16GO:0055114: oxidation-reduction process4.38E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.99E-05
18GO:0071484: cellular response to light intensity5.99E-05
19GO:0015994: chlorophyll metabolic process1.05E-04
20GO:0010027: thylakoid membrane organization1.46E-04
21GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.32E-04
22GO:0010190: cytochrome b6f complex assembly2.32E-04
23GO:0009768: photosynthesis, light harvesting in photosystem I2.60E-04
24GO:1901259: chloroplast rRNA processing3.12E-04
25GO:0010196: nonphotochemical quenching4.03E-04
26GO:0065002: intracellular protein transmembrane transport4.23E-04
27GO:0080093: regulation of photorespiration4.23E-04
28GO:0031998: regulation of fatty acid beta-oxidation4.23E-04
29GO:0010028: xanthophyll cycle4.23E-04
30GO:0034337: RNA folding4.23E-04
31GO:0000476: maturation of 4.5S rRNA4.23E-04
32GO:0000967: rRNA 5'-end processing4.23E-04
33GO:0046467: membrane lipid biosynthetic process4.23E-04
34GO:0005980: glycogen catabolic process4.23E-04
35GO:0015671: oxygen transport4.23E-04
36GO:0043953: protein transport by the Tat complex4.23E-04
37GO:0071277: cellular response to calcium ion4.23E-04
38GO:0006353: DNA-templated transcription, termination5.03E-04
39GO:0010114: response to red light5.13E-04
40GO:0005975: carbohydrate metabolic process5.71E-04
41GO:0009657: plastid organization6.14E-04
42GO:0006098: pentose-phosphate shunt7.36E-04
43GO:0006783: heme biosynthetic process7.36E-04
44GO:0005982: starch metabolic process8.68E-04
45GO:1901657: glycosyl compound metabolic process8.76E-04
46GO:0016122: xanthophyll metabolic process9.16E-04
47GO:0016121: carotene catabolic process9.16E-04
48GO:0034470: ncRNA processing9.16E-04
49GO:0051645: Golgi localization9.16E-04
50GO:0080029: cellular response to boron-containing substance levels9.16E-04
51GO:0016124: xanthophyll catabolic process9.16E-04
52GO:0060151: peroxisome localization9.16E-04
53GO:0006898: receptor-mediated endocytosis9.16E-04
54GO:0034755: iron ion transmembrane transport9.16E-04
55GO:0071457: cellular response to ozone9.16E-04
56GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-03
57GO:0005977: glycogen metabolic process1.49E-03
58GO:0006810: transport1.49E-03
59GO:0006518: peptide metabolic process1.49E-03
60GO:0009405: pathogenesis1.49E-03
61GO:0090436: leaf pavement cell development1.49E-03
62GO:0051646: mitochondrion localization1.49E-03
63GO:0006696: ergosterol biosynthetic process1.49E-03
64GO:0006094: gluconeogenesis1.51E-03
65GO:0030048: actin filament-based movement1.51E-03
66GO:0048467: gynoecium development1.70E-03
67GO:0010143: cutin biosynthetic process1.70E-03
68GO:0006636: unsaturated fatty acid biosynthetic process2.13E-03
69GO:0046713: borate transport2.15E-03
70GO:1902358: sulfate transmembrane transport2.15E-03
71GO:0045338: farnesyl diphosphate metabolic process2.15E-03
72GO:0006020: inositol metabolic process2.15E-03
73GO:0009152: purine ribonucleotide biosynthetic process2.15E-03
74GO:0010601: positive regulation of auxin biosynthetic process2.15E-03
75GO:0046653: tetrahydrofolate metabolic process2.15E-03
76GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
77GO:0061077: chaperone-mediated protein folding2.86E-03
78GO:0016114: terpenoid biosynthetic process2.86E-03
79GO:0010021: amylopectin biosynthetic process2.89E-03
80GO:0071486: cellular response to high light intensity2.89E-03
81GO:0009765: photosynthesis, light harvesting2.89E-03
82GO:0045727: positive regulation of translation2.89E-03
83GO:0006021: inositol biosynthetic process2.89E-03
84GO:0071483: cellular response to blue light2.89E-03
85GO:0006097: glyoxylate cycle3.71E-03
86GO:0071493: cellular response to UV-B3.71E-03
87GO:0006564: L-serine biosynthetic process3.71E-03
88GO:0009904: chloroplast accumulation movement3.71E-03
89GO:0006656: phosphatidylcholine biosynthetic process3.71E-03
90GO:0009306: protein secretion3.71E-03
91GO:0032259: methylation3.99E-03
92GO:0006364: rRNA processing4.53E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process4.59E-03
94GO:0042549: photosystem II stabilization4.59E-03
95GO:1902456: regulation of stomatal opening4.59E-03
96GO:0009643: photosynthetic acclimation4.59E-03
97GO:0009228: thiamine biosynthetic process4.59E-03
98GO:0046855: inositol phosphate dephosphorylation4.59E-03
99GO:0019252: starch biosynthetic process5.42E-03
100GO:0009854: oxidative photosynthetic carbon pathway5.53E-03
101GO:0009955: adaxial/abaxial pattern specification5.53E-03
102GO:0071333: cellular response to glucose stimulus5.53E-03
103GO:0009903: chloroplast avoidance movement5.53E-03
104GO:0010189: vitamin E biosynthetic process5.53E-03
105GO:0032502: developmental process6.20E-03
106GO:0009658: chloroplast organization6.21E-03
107GO:0009395: phospholipid catabolic process6.54E-03
108GO:0009772: photosynthetic electron transport in photosystem II6.54E-03
109GO:0048437: floral organ development6.54E-03
110GO:0009645: response to low light intensity stimulus6.54E-03
111GO:0008272: sulfate transport6.54E-03
112GO:0009769: photosynthesis, light harvesting in photosystem II6.54E-03
113GO:0019827: stem cell population maintenance7.60E-03
114GO:0009642: response to light intensity7.60E-03
115GO:0010078: maintenance of root meristem identity7.60E-03
116GO:0009704: de-etiolation7.60E-03
117GO:0042255: ribosome assembly7.60E-03
118GO:0080167: response to karrikin8.62E-03
119GO:0043562: cellular response to nitrogen levels8.73E-03
120GO:0015996: chlorophyll catabolic process8.73E-03
121GO:0019430: removal of superoxide radicals8.73E-03
122GO:0009821: alkaloid biosynthetic process9.92E-03
123GO:0010206: photosystem II repair9.92E-03
124GO:0090333: regulation of stomatal closure9.92E-03
125GO:0019432: triglyceride biosynthetic process9.92E-03
126GO:0006754: ATP biosynthetic process9.92E-03
127GO:0009735: response to cytokinin1.00E-02
128GO:0018298: protein-chromophore linkage1.10E-02
129GO:0006779: porphyrin-containing compound biosynthetic process1.12E-02
130GO:0009813: flavonoid biosynthetic process1.16E-02
131GO:0010218: response to far red light1.21E-02
132GO:0009641: shade avoidance1.24E-02
133GO:0009684: indoleacetic acid biosynthetic process1.38E-02
134GO:0043085: positive regulation of catalytic activity1.38E-02
135GO:0006879: cellular iron ion homeostasis1.38E-02
136GO:0000272: polysaccharide catabolic process1.38E-02
137GO:0006415: translational termination1.38E-02
138GO:0018119: peptidyl-cysteine S-nitrosylation1.38E-02
139GO:0009637: response to blue light1.40E-02
140GO:0009853: photorespiration1.40E-02
141GO:0034599: cellular response to oxidative stress1.46E-02
142GO:0006790: sulfur compound metabolic process1.52E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.52E-02
144GO:0009767: photosynthetic electron transport chain1.66E-02
145GO:0006631: fatty acid metabolic process1.66E-02
146GO:0010588: cotyledon vascular tissue pattern formation1.66E-02
147GO:0006108: malate metabolic process1.66E-02
148GO:0010223: secondary shoot formation1.81E-02
149GO:0009266: response to temperature stimulus1.81E-02
150GO:0007015: actin filament organization1.81E-02
151GO:0046854: phosphatidylinositol phosphorylation1.96E-02
152GO:0006418: tRNA aminoacylation for protein translation2.45E-02
153GO:0051603: proteolysis involved in cellular protein catabolic process2.52E-02
154GO:0019915: lipid storage2.62E-02
155GO:0009269: response to desiccation2.62E-02
156GO:0019748: secondary metabolic process2.80E-02
157GO:0016226: iron-sulfur cluster assembly2.80E-02
158GO:0030433: ubiquitin-dependent ERAD pathway2.80E-02
159GO:0006096: glycolytic process2.88E-02
160GO:0071215: cellular response to abscisic acid stimulus2.98E-02
161GO:0009686: gibberellin biosynthetic process2.98E-02
162GO:0046686: response to cadmium ion3.28E-02
163GO:0016117: carotenoid biosynthetic process3.34E-02
164GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.39E-02
165GO:0010087: phloem or xylem histogenesis3.54E-02
166GO:0042631: cellular response to water deprivation3.54E-02
167GO:0080022: primary root development3.54E-02
168GO:0009416: response to light stimulus3.63E-02
169GO:0009741: response to brassinosteroid3.73E-02
170GO:0010268: brassinosteroid homeostasis3.73E-02
171GO:0009958: positive gravitropism3.73E-02
172GO:0006520: cellular amino acid metabolic process3.73E-02
173GO:0071472: cellular response to salt stress3.73E-02
174GO:0010154: fruit development3.73E-02
175GO:0006662: glycerol ether metabolic process3.73E-02
176GO:0015986: ATP synthesis coupled proton transport3.93E-02
177GO:0009556: microsporogenesis4.13E-02
178GO:0009851: auxin biosynthetic process4.13E-02
179GO:0048825: cotyledon development4.13E-02
180GO:0009791: post-embryonic development4.13E-02
181GO:0016132: brassinosteroid biosynthetic process4.33E-02
182GO:0009630: gravitropism4.54E-02
183GO:0009058: biosynthetic process4.56E-02
184GO:0010090: trichome morphogenesis4.75E-02
185GO:0009567: double fertilization forming a zygote and endosperm4.96E-02
186GO:0016125: sterol metabolic process4.96E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0047668: amygdalin beta-glucosidase activity0.00E+00
5GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
6GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
7GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
8GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
9GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
10GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
11GO:0008887: glycerate kinase activity0.00E+00
12GO:0045550: geranylgeranyl reductase activity0.00E+00
13GO:0046422: violaxanthin de-epoxidase activity0.00E+00
14GO:0080082: esculin beta-glucosidase activity0.00E+00
15GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
16GO:0004567: beta-mannosidase activity0.00E+00
17GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
18GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
19GO:0004822: isoleucine-tRNA ligase activity0.00E+00
20GO:0019843: rRNA binding5.70E-05
21GO:0016851: magnesium chelatase activity5.99E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.05E-04
23GO:0031409: pigment binding1.95E-04
24GO:0005528: FK506 binding2.26E-04
25GO:0004332: fructose-bisphosphate aldolase activity2.32E-04
26GO:0016491: oxidoreductase activity3.78E-04
27GO:0045486: naringenin 3-dioxygenase activity4.23E-04
28GO:0005344: oxygen transporter activity4.23E-04
29GO:0035671: enone reductase activity4.23E-04
30GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.23E-04
31GO:0030794: (S)-coclaurine-N-methyltransferase activity4.23E-04
32GO:0080079: cellobiose glucosidase activity4.23E-04
33GO:0008184: glycogen phosphorylase activity4.23E-04
34GO:0051777: ent-kaurenoate oxidase activity4.23E-04
35GO:0004856: xylulokinase activity4.23E-04
36GO:0004645: phosphorylase activity4.23E-04
37GO:0034256: chlorophyll(ide) b reductase activity4.23E-04
38GO:0015168: glycerol transmembrane transporter activity4.23E-04
39GO:0004853: uroporphyrinogen decarboxylase activity4.23E-04
40GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.51E-04
41GO:0008883: glutamyl-tRNA reductase activity9.16E-04
42GO:0047746: chlorophyllase activity9.16E-04
43GO:0042389: omega-3 fatty acid desaturase activity9.16E-04
44GO:0010297: heteropolysaccharide binding9.16E-04
45GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.16E-04
46GO:0009977: proton motive force dependent protein transmembrane transporter activity9.16E-04
47GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
48GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity9.16E-04
49GO:0052832: inositol monophosphate 3-phosphatase activity9.16E-04
50GO:0033201: alpha-1,4-glucan synthase activity9.16E-04
51GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.16E-04
52GO:0016630: protochlorophyllide reductase activity9.16E-04
53GO:0019172: glyoxalase III activity9.16E-04
54GO:0019156: isoamylase activity9.16E-04
55GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.16E-04
56GO:0008934: inositol monophosphate 1-phosphatase activity9.16E-04
57GO:0052833: inositol monophosphate 4-phosphatase activity9.16E-04
58GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.16E-04
59GO:0000234: phosphoethanolamine N-methyltransferase activity9.16E-04
60GO:0047372: acylglycerol lipase activity1.16E-03
61GO:0016168: chlorophyll binding1.27E-03
62GO:0102483: scopolin beta-glucosidase activity1.45E-03
63GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.49E-03
64GO:0008864: formyltetrahydrofolate deformylase activity1.49E-03
65GO:0090729: toxin activity1.49E-03
66GO:0004373: glycogen (starch) synthase activity1.49E-03
67GO:0050734: hydroxycinnamoyltransferase activity1.49E-03
68GO:0002161: aminoacyl-tRNA editing activity1.49E-03
69GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
70GO:0004565: beta-galactosidase activity1.51E-03
71GO:0003774: motor activity1.70E-03
72GO:0019201: nucleotide kinase activity2.15E-03
73GO:0016149: translation release factor activity, codon specific2.15E-03
74GO:0022890: inorganic cation transmembrane transporter activity2.15E-03
75GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.15E-03
76GO:0046715: borate transmembrane transporter activity2.15E-03
77GO:0008422: beta-glucosidase activity2.50E-03
78GO:0015204: urea transmembrane transporter activity2.89E-03
79GO:0045430: chalcone isomerase activity2.89E-03
80GO:0009011: starch synthase activity2.89E-03
81GO:0004185: serine-type carboxypeptidase activity3.09E-03
82GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.71E-03
83GO:0003727: single-stranded RNA binding3.71E-03
84GO:0003959: NADPH dehydrogenase activity3.71E-03
85GO:0016846: carbon-sulfur lyase activity3.71E-03
86GO:0016773: phosphotransferase activity, alcohol group as acceptor3.71E-03
87GO:0016615: malate dehydrogenase activity4.59E-03
88GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.59E-03
89GO:2001070: starch binding4.59E-03
90GO:0004629: phospholipase C activity4.59E-03
91GO:0004556: alpha-amylase activity4.59E-03
92GO:0004462: lactoylglutathione lyase activity4.59E-03
93GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.59E-03
94GO:0004784: superoxide dismutase activity4.59E-03
95GO:0004017: adenylate kinase activity5.53E-03
96GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.53E-03
97GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.53E-03
98GO:0004435: phosphatidylinositol phospholipase C activity5.53E-03
99GO:0030060: L-malate dehydrogenase activity5.53E-03
100GO:0048038: quinone binding5.80E-03
101GO:0008168: methyltransferase activity5.86E-03
102GO:0008271: secondary active sulfate transmembrane transporter activity8.73E-03
103GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.73E-03
104GO:0003747: translation release factor activity9.92E-03
105GO:0016844: strictosidine synthase activity1.12E-02
106GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.12E-02
107GO:0005381: iron ion transmembrane transporter activity1.12E-02
108GO:0004222: metalloendopeptidase activity1.21E-02
109GO:0030234: enzyme regulator activity1.24E-02
110GO:0008047: enzyme activator activity1.24E-02
111GO:0008559: xenobiotic-transporting ATPase activity1.38E-02
112GO:0015386: potassium:proton antiporter activity1.38E-02
113GO:0003993: acid phosphatase activity1.46E-02
114GO:0015116: sulfate transmembrane transporter activity1.52E-02
115GO:0000049: tRNA binding1.52E-02
116GO:0031072: heat shock protein binding1.66E-02
117GO:0003725: double-stranded RNA binding1.66E-02
118GO:0004022: alcohol dehydrogenase (NAD) activity1.66E-02
119GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.81E-02
120GO:0008266: poly(U) RNA binding1.81E-02
121GO:0042802: identical protein binding1.94E-02
122GO:0051537: 2 iron, 2 sulfur cluster binding1.95E-02
123GO:0051536: iron-sulfur cluster binding2.29E-02
124GO:0031418: L-ascorbic acid binding2.29E-02
125GO:0015079: potassium ion transmembrane transporter activity2.45E-02
126GO:0016787: hydrolase activity2.49E-02
127GO:0016788: hydrolase activity, acting on ester bonds2.54E-02
128GO:0047134: protein-disulfide reductase activity3.34E-02
129GO:0004812: aminoacyl-tRNA ligase activity3.34E-02
130GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.73E-02
131GO:0004791: thioredoxin-disulfide reductase activity3.93E-02
132GO:0015299: solute:proton antiporter activity3.93E-02
133GO:0050662: coenzyme binding3.93E-02
134GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.75E-02
135GO:0000156: phosphorelay response regulator activity4.75E-02
136GO:0016791: phosphatase activity4.96E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.32E-50
4GO:0009535: chloroplast thylakoid membrane8.88E-33
5GO:0009534: chloroplast thylakoid7.54E-31
6GO:0009941: chloroplast envelope1.26E-17
7GO:0009570: chloroplast stroma1.15E-15
8GO:0009543: chloroplast thylakoid lumen3.75E-15
9GO:0009579: thylakoid2.99E-14
10GO:0031977: thylakoid lumen8.27E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.39E-09
12GO:0031969: chloroplast membrane1.25E-08
13GO:0010287: plastoglobule4.74E-06
14GO:0033281: TAT protein transport complex2.76E-05
15GO:0010007: magnesium chelatase complex2.76E-05
16GO:0030095: chloroplast photosystem II1.41E-04
17GO:0030076: light-harvesting complex1.67E-04
18GO:0009654: photosystem II oxygen evolving complex2.60E-04
19GO:0009344: nitrite reductase complex [NAD(P)H]4.23E-04
20GO:0009547: plastid ribosome4.23E-04
21GO:0031361: integral component of thylakoid membrane4.23E-04
22GO:0009515: granal stacked thylakoid4.23E-04
23GO:0009522: photosystem I6.25E-04
24GO:0019898: extrinsic component of membrane6.83E-04
25GO:0043036: starch grain9.16E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex9.16E-04
27GO:0016459: myosin complex1.01E-03
28GO:0042651: thylakoid membrane2.60E-03
29GO:0009544: chloroplast ATP synthase complex2.89E-03
30GO:0009517: PSII associated light-harvesting complex II2.89E-03
31GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.59E-03
32GO:0009523: photosystem II5.42E-03
33GO:0005840: ribosome5.49E-03
34GO:0009840: chloroplastic endopeptidase Clp complex5.53E-03
35GO:0048046: apoplast6.33E-03
36GO:0010319: stromule7.48E-03
37GO:0009501: amyloplast7.60E-03
38GO:0031982: vesicle7.60E-03
39GO:0005763: mitochondrial small ribosomal subunit9.92E-03
40GO:0031901: early endosome membrane9.92E-03
41GO:0000311: plastid large ribosomal subunit1.52E-02
42GO:0032040: small-subunit processome1.52E-02
43GO:0009508: plastid chromosome1.66E-02
44GO:0005773: vacuole1.72E-02
45GO:0043234: protein complex2.12E-02
46GO:0015935: small ribosomal subunit2.62E-02
47GO:0009532: plastid stroma2.62E-02
48GO:0005623: cell4.45E-02
<
Gene type



Gene DE type