co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:0009661: chromoplast organization	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	3.29E-08
8	GO:0010114: response to red light	1.78E-05
9	GO:0016120: carotene biosynthetic process	1.85E-05
10	GO:0010190: cytochrome b6f complex assembly	2.79E-05
11	GO:0032544: plastid translation	8.78E-05
12	GO:0055114: oxidation-reduction process	9.90E-05
13	GO:0006098: pentose-phosphate shunt	1.08E-04
14	GO:0000025: maltose catabolic process	1.14E-04
15	GO:0005980: glycogen catabolic process	1.14E-04
16	GO:0071277: cellular response to calcium ion	1.14E-04
17	GO:0000023: maltose metabolic process	1.14E-04
18	GO:0006094: gluconeogenesis	2.41E-04
19	GO:0080029: cellular response to boron-containing substance levels	2.65E-04
20	GO:0071457: cellular response to ozone	2.65E-04
21	GO:0005976: polysaccharide metabolic process	2.65E-04
22	GO:1904143: positive regulation of carotenoid biosynthetic process	2.65E-04
23	GO:0010207: photosystem II assembly	2.74E-04
24	GO:0006636: unsaturated fatty acid biosynthetic process	3.44E-04
25	GO:0009768: photosynthesis, light harvesting in photosystem I	4.22E-04
26	GO:0090391: granum assembly	4.38E-04
27	GO:0006518: peptide metabolic process	4.38E-04
28	GO:0015979: photosynthesis	6.00E-04
29	GO:0046713: borate transport	6.29E-04
30	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.29E-04
31	GO:1902358: sulfate transmembrane transport	6.29E-04
32	GO:0006020: inositol metabolic process	6.29E-04
33	GO:0071484: cellular response to light intensity	6.29E-04
34	GO:0009765: photosynthesis, light harvesting	8.35E-04
35	GO:0045727: positive regulation of translation	8.35E-04
36	GO:0015994: chlorophyll metabolic process	8.35E-04
37	GO:0006021: inositol biosynthetic process	8.35E-04
38	GO:0071486: cellular response to high light intensity	8.35E-04
39	GO:0071493: cellular response to UV-B	1.05E-03
40	GO:0046855: inositol phosphate dephosphorylation	1.29E-03
41	GO:1902456: regulation of stomatal opening	1.29E-03
42	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.29E-03
43	GO:0042549: photosystem II stabilization	1.29E-03
44	GO:0009955: adaxial/abaxial pattern specification	1.54E-03
45	GO:1901259: chloroplast rRNA processing	1.54E-03
46	GO:0018298: protein-chromophore linkage	1.69E-03
47	GO:0010196: nonphotochemical quenching	1.81E-03
48	GO:0008272: sulfate transport	1.81E-03
49	GO:0009769: photosynthesis, light harvesting in photosystem II	1.81E-03
50	GO:0009645: response to low light intensity stimulus	1.81E-03
51	GO:0010218: response to far red light	1.86E-03
52	GO:0009642: response to light intensity	2.09E-03
53	GO:0030091: protein repair	2.09E-03
54	GO:0009704: de-etiolation	2.09E-03
55	GO:0050821: protein stabilization	2.09E-03
56	GO:0009637: response to blue light	2.13E-03
57	GO:0015996: chlorophyll catabolic process	2.39E-03
58	GO:0009657: plastid organization	2.39E-03
59	GO:0019430: removal of superoxide radicals	2.39E-03
60	GO:0009821: alkaloid biosynthetic process	2.70E-03
61	GO:0090333: regulation of stomatal closure	2.70E-03
62	GO:0006810: transport	2.85E-03
63	GO:0005982: starch metabolic process	3.02E-03
64	GO:0009641: shade avoidance	3.36E-03
65	GO:0006364: rRNA processing	3.68E-03
66	GO:0043085: positive regulation of catalytic activity	3.71E-03
67	GO:0000272: polysaccharide catabolic process	3.71E-03
68	GO:0018119: peptidyl-cysteine S-nitrosylation	3.71E-03
69	GO:0006790: sulfur compound metabolic process	4.06E-03
70	GO:0005983: starch catabolic process	4.06E-03
71	GO:0006096: glycolytic process	4.34E-03
72	GO:0009725: response to hormone	4.43E-03
73	GO:0009767: photosynthetic electron transport chain	4.43E-03
74	GO:0010143: cutin biosynthetic process	4.81E-03
75	GO:0010223: secondary shoot formation	4.81E-03
76	GO:0009266: response to temperature stimulus	4.81E-03
77	GO:0046854: phosphatidylinositol phosphorylation	5.21E-03
78	GO:0009269: response to desiccation	6.89E-03
79	GO:0016226: iron-sulfur cluster assembly	7.34E-03
80	GO:0030433: ubiquitin-dependent ERAD pathway	7.34E-03
81	GO:0016117: carotenoid biosynthetic process	8.74E-03
82	GO:0042631: cellular response to water deprivation	9.23E-03
83	GO:0009409: response to cold	9.67E-03
84	GO:0071472: cellular response to salt stress	9.73E-03
85	GO:0006662: glycerol ether metabolic process	9.73E-03
86	GO:0019252: starch biosynthetic process	1.08E-02
87	GO:0032502: developmental process	1.18E-02
88	GO:0009630: gravitropism	1.18E-02
89	GO:0046686: response to cadmium ion	1.19E-02
90	GO:0010027: thylakoid membrane organization	1.46E-02
91	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.52E-02
92	GO:0042128: nitrate assimilation	1.58E-02
93	GO:0034599: cellular response to oxidative stress	2.16E-02
94	GO:0032259: methylation	2.46E-02
95	GO:0006979: response to oxidative stress	2.48E-02
96	GO:0009744: response to sucrose	2.50E-02
97	GO:0000209: protein polyubiquitination	2.57E-02
98	GO:0009644: response to high light intensity	2.65E-02
99	GO:0006417: regulation of translation	3.33E-02
100	GO:0006396: RNA processing	4.06E-02
101	GO:0009058: biosynthetic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0016166: phytoene dehydrogenase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0010297: heteropolysaccharide binding	6.64E-07
6	GO:0004332: fructose-bisphosphate aldolase activity	2.79E-05
7	GO:0008184: glycogen phosphorylase activity	1.14E-04
8	GO:0004134: 4-alpha-glucanotransferase activity	1.14E-04
9	GO:0004645: phosphorylase activity	1.14E-04
10	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.14E-04
11	GO:0034256: chlorophyll(ide) b reductase activity	1.14E-04
12	GO:0015168: glycerol transmembrane transporter activity	1.14E-04
13	GO:0035671: enone reductase activity	1.14E-04
14	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.14E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	2.65E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	2.65E-04
17	GO:0019172: glyoxalase III activity	2.65E-04
18	GO:0047746: chlorophyllase activity	2.65E-04
19	GO:0042389: omega-3 fatty acid desaturase activity	2.65E-04
20	GO:0052832: inositol monophosphate 3-phosphatase activity	2.65E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	2.65E-04
22	GO:0031409: pigment binding	3.44E-04
23	GO:0004373: glycogen (starch) synthase activity	4.38E-04
24	GO:0050734: hydroxycinnamoyltransferase activity	4.38E-04
25	GO:0004324: ferredoxin-NADP+ reductase activity	4.38E-04
26	GO:0046715: borate transmembrane transporter activity	6.29E-04
27	GO:0009011: starch synthase activity	8.35E-04
28	GO:0015204: urea transmembrane transporter activity	8.35E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.35E-04
30	GO:0003959: NADPH dehydrogenase activity	1.05E-03
31	GO:0004784: superoxide dismutase activity	1.29E-03
32	GO:0004462: lactoylglutathione lyase activity	1.29E-03
33	GO:2001070: starch binding	1.29E-03
34	GO:0016168: chlorophyll binding	1.38E-03
35	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.54E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.54E-03
37	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.54E-03
38	GO:0016491: oxidoreductase activity	2.35E-03
39	GO:0008271: secondary active sulfate transmembrane transporter activity	2.39E-03
40	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.39E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-03
42	GO:0016844: strictosidine synthase activity	3.02E-03
43	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.02E-03
44	GO:0008047: enzyme activator activity	3.36E-03
45	GO:0015116: sulfate transmembrane transporter activity	4.06E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	4.43E-03
47	GO:0031072: heat shock protein binding	4.43E-03
48	GO:0008266: poly(U) RNA binding	4.81E-03
49	GO:0051536: iron-sulfur cluster binding	6.03E-03
50	GO:0019843: rRNA binding	6.52E-03
51	GO:0003727: single-stranded RNA binding	8.26E-03
52	GO:0047134: protein-disulfide reductase activity	8.74E-03
53	GO:0050662: coenzyme binding	1.02E-02
54	GO:0004791: thioredoxin-disulfide reductase activity	1.02E-02
55	GO:0004872: receptor activity	1.08E-02
56	GO:0048038: quinone binding	1.13E-02
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.24E-02
58	GO:0008168: methyltransferase activity	1.34E-02
59	GO:0015250: water channel activity	1.46E-02
60	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.70E-02
61	GO:0004222: metalloendopeptidase activity	1.89E-02
62	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.16E-02
63	GO:0043621: protein self-association	2.65E-02
64	GO:0015293: symporter activity	2.72E-02
65	GO:0031625: ubiquitin protein ligase binding	3.33E-02
66	GO:0051082: unfolded protein binding	3.98E-02
67	GO:0015035: protein disulfide oxidoreductase activity	4.06E-02
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.31E-29
2	GO:0009534: chloroplast thylakoid	6.79E-22
3	GO:0009535: chloroplast thylakoid membrane	1.20E-20
4	GO:0009941: chloroplast envelope	1.01E-12
5	GO:0009579: thylakoid	2.24E-10
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.94E-09
7	GO:0010287: plastoglobule	2.04E-07
8	GO:0031977: thylakoid lumen	4.82E-07
9	GO:0009570: chloroplast stroma	8.31E-07
10	GO:0009515: granal stacked thylakoid	1.14E-04
11	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.65E-04
12	GO:0030076: light-harvesting complex	3.08E-04
13	GO:0009654: photosystem II oxygen evolving complex	4.22E-04
14	GO:0009509: chromoplast	4.38E-04
15	GO:0031969: chloroplast membrane	4.90E-04
16	GO:0009522: photosystem I	8.05E-04
17	GO:0009517: PSII associated light-harvesting complex II	8.35E-04
18	GO:0009523: photosystem II	8.60E-04
19	GO:0019898: extrinsic component of membrane	8.60E-04
20	GO:0009543: chloroplast thylakoid lumen	8.76E-04
21	GO:0010319: stromule	1.17E-03
22	GO:0009501: amyloplast	2.09E-03
23	GO:0005763: mitochondrial small ribosomal subunit	2.70E-03
24	GO:0048046: apoplast	4.28E-03
25	GO:0042651: thylakoid membrane	6.45E-03
26	GO:0005887: integral component of plasma membrane	3.48E-02
27	GO:0005623: cell	4.75E-02