Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G48120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0006907: pinocytosis0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0070979: protein K11-linked ubiquitination0.00E+00
5GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
6GO:0001778: plasma membrane repair0.00E+00
7GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0080127: fruit septum development0.00E+00
13GO:0000373: Group II intron splicing2.41E-06
14GO:0009451: RNA modification1.17E-05
15GO:1902025: nitrate import6.07E-04
16GO:0006551: leucine metabolic process6.07E-04
17GO:0043686: co-translational protein modification6.07E-04
18GO:0043087: regulation of GTPase activity6.07E-04
19GO:2000021: regulation of ion homeostasis6.07E-04
20GO:0006436: tryptophanyl-tRNA aminoacylation6.07E-04
21GO:0090548: response to nitrate starvation6.07E-04
22GO:0000066: mitochondrial ornithine transport6.07E-04
23GO:0034757: negative regulation of iron ion transport6.07E-04
24GO:0009090: homoserine biosynthetic process6.07E-04
25GO:0043489: RNA stabilization6.07E-04
26GO:0043266: regulation of potassium ion transport6.07E-04
27GO:0000105: histidine biosynthetic process8.52E-04
28GO:0046620: regulation of organ growth8.52E-04
29GO:0032544: plastid translation1.04E-03
30GO:0009958: positive gravitropism1.12E-03
31GO:0009926: auxin polar transport1.17E-03
32GO:0048507: meristem development1.24E-03
33GO:0001736: establishment of planar polarity1.31E-03
34GO:0080009: mRNA methylation1.31E-03
35GO:0009786: regulation of asymmetric cell division1.31E-03
36GO:0046740: transport of virus in host, cell to cell1.31E-03
37GO:0006420: arginyl-tRNA aminoacylation1.31E-03
38GO:0048255: mRNA stabilization1.31E-03
39GO:0010271: regulation of chlorophyll catabolic process1.31E-03
40GO:0006432: phenylalanyl-tRNA aminoacylation1.31E-03
41GO:0040008: regulation of growth1.66E-03
42GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.68E-03
43GO:0048829: root cap development1.71E-03
44GO:0030029: actin filament-based process2.15E-03
45GO:0045910: negative regulation of DNA recombination2.15E-03
46GO:0031022: nuclear migration along microfilament2.15E-03
47GO:0080117: secondary growth2.15E-03
48GO:0031145: anaphase-promoting complex-dependent catabolic process2.15E-03
49GO:0010582: floral meristem determinacy2.27E-03
50GO:0009067: aspartate family amino acid biosynthetic process3.12E-03
51GO:0051513: regulation of monopolar cell growth3.12E-03
52GO:0009102: biotin biosynthetic process3.12E-03
53GO:0030071: regulation of mitotic metaphase/anaphase transition3.12E-03
54GO:0051639: actin filament network formation3.12E-03
55GO:0032456: endocytic recycling3.12E-03
56GO:0034059: response to anoxia3.12E-03
57GO:0044211: CTP salvage3.12E-03
58GO:0009800: cinnamic acid biosynthetic process3.12E-03
59GO:0006612: protein targeting to membrane3.12E-03
60GO:2000904: regulation of starch metabolic process3.12E-03
61GO:0009793: embryo development ending in seed dormancy3.55E-03
62GO:0051017: actin filament bundle assembly4.05E-03
63GO:0009956: radial pattern formation4.21E-03
64GO:0009755: hormone-mediated signaling pathway4.21E-03
65GO:0051764: actin crosslink formation4.21E-03
66GO:0042274: ribosomal small subunit biogenesis4.21E-03
67GO:0006021: inositol biosynthetic process4.21E-03
68GO:0008295: spermidine biosynthetic process4.21E-03
69GO:0044206: UMP salvage4.21E-03
70GO:0009904: chloroplast accumulation movement5.41E-03
71GO:0031365: N-terminal protein amino acid modification5.41E-03
72GO:0009107: lipoate biosynthetic process5.41E-03
73GO:0016123: xanthophyll biosynthetic process5.41E-03
74GO:0010438: cellular response to sulfur starvation5.41E-03
75GO:0010158: abaxial cell fate specification5.41E-03
76GO:0032876: negative regulation of DNA endoreduplication5.41E-03
77GO:0080110: sporopollenin biosynthetic process5.41E-03
78GO:0016131: brassinosteroid metabolic process5.41E-03
79GO:0009696: salicylic acid metabolic process5.41E-03
80GO:0016554: cytidine to uridine editing6.71E-03
81GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.71E-03
82GO:0042793: transcription from plastid promoter6.71E-03
83GO:0048831: regulation of shoot system development6.71E-03
84GO:0003006: developmental process involved in reproduction6.71E-03
85GO:0006559: L-phenylalanine catabolic process6.71E-03
86GO:0006206: pyrimidine nucleobase metabolic process6.71E-03
87GO:0009734: auxin-activated signaling pathway6.72E-03
88GO:0010087: phloem or xylem histogenesis7.53E-03
89GO:0031930: mitochondria-nucleus signaling pathway8.11E-03
90GO:0009099: valine biosynthetic process8.11E-03
91GO:0009903: chloroplast avoidance movement8.11E-03
92GO:0009088: threonine biosynthetic process8.11E-03
93GO:0009648: photoperiodism8.11E-03
94GO:0009612: response to mechanical stimulus8.11E-03
95GO:0009082: branched-chain amino acid biosynthetic process8.11E-03
96GO:0048509: regulation of meristem development8.11E-03
97GO:0010305: leaf vascular tissue pattern formation8.13E-03
98GO:0009733: response to auxin8.13E-03
99GO:0007018: microtubule-based movement8.75E-03
100GO:0015693: magnesium ion transport9.61E-03
101GO:0009610: response to symbiotic fungus9.61E-03
102GO:0010050: vegetative phase change9.61E-03
103GO:0010098: suspensor development9.61E-03
104GO:0010583: response to cyclopentenone1.08E-02
105GO:0016032: viral process1.08E-02
106GO:0032875: regulation of DNA endoreduplication1.12E-02
107GO:0070413: trehalose metabolism in response to stress1.12E-02
108GO:2000070: regulation of response to water deprivation1.12E-02
109GO:0009231: riboflavin biosynthetic process1.12E-02
110GO:0010439: regulation of glucosinolate biosynthetic process1.12E-02
111GO:0009819: drought recovery1.12E-02
112GO:0009850: auxin metabolic process1.12E-02
113GO:0009639: response to red or far red light1.22E-02
114GO:0009827: plant-type cell wall modification1.29E-02
115GO:0019430: removal of superoxide radicals1.29E-02
116GO:0009657: plastid organization1.29E-02
117GO:0009097: isoleucine biosynthetic process1.29E-02
118GO:0016573: histone acetylation1.65E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.65E-02
120GO:0009098: leucine biosynthetic process1.65E-02
121GO:0010018: far-red light signaling pathway1.65E-02
122GO:0009086: methionine biosynthetic process1.65E-02
123GO:1900865: chloroplast RNA modification1.65E-02
124GO:0016571: histone methylation1.65E-02
125GO:0016311: dephosphorylation1.82E-02
126GO:0006298: mismatch repair1.84E-02
127GO:0006259: DNA metabolic process1.84E-02
128GO:0010192: mucilage biosynthetic process1.84E-02
129GO:0009299: mRNA transcription1.84E-02
130GO:0006782: protoporphyrinogen IX biosynthetic process1.84E-02
131GO:0006535: cysteine biosynthetic process from serine1.84E-02
132GO:0030244: cellulose biosynthetic process1.92E-02
133GO:0010311: lateral root formation2.01E-02
134GO:0000160: phosphorelay signal transduction system2.01E-02
135GO:0048765: root hair cell differentiation2.04E-02
136GO:0006265: DNA topological change2.04E-02
137GO:0009089: lysine biosynthetic process via diaminopimelate2.04E-02
138GO:0009682: induced systemic resistance2.04E-02
139GO:0043085: positive regulation of catalytic activity2.04E-02
140GO:0009910: negative regulation of flower development2.22E-02
141GO:0006790: sulfur compound metabolic process2.25E-02
142GO:0010105: negative regulation of ethylene-activated signaling pathway2.25E-02
143GO:0045037: protein import into chloroplast stroma2.25E-02
144GO:0006865: amino acid transport2.32E-02
145GO:0009867: jasmonic acid mediated signaling pathway2.43E-02
146GO:0009691: cytokinin biosynthetic process2.46E-02
147GO:0009725: response to hormone2.46E-02
148GO:0010540: basipetal auxin transport2.68E-02
149GO:0009266: response to temperature stimulus2.68E-02
150GO:0048467: gynoecium development2.68E-02
151GO:0010020: chloroplast fission2.68E-02
152GO:0009933: meristem structural organization2.68E-02
153GO:0006468: protein phosphorylation2.76E-02
154GO:0046854: phosphatidylinositol phosphorylation2.91E-02
155GO:0009825: multidimensional cell growth2.91E-02
156GO:0008283: cell proliferation3.14E-02
157GO:0009833: plant-type primary cell wall biogenesis3.15E-02
158GO:0000162: tryptophan biosynthetic process3.15E-02
159GO:0042753: positive regulation of circadian rhythm3.15E-02
160GO:0007166: cell surface receptor signaling pathway3.38E-02
161GO:0006289: nucleotide-excision repair3.39E-02
162GO:0005992: trehalose biosynthetic process3.39E-02
163GO:0019344: cysteine biosynthetic process3.39E-02
164GO:0030150: protein import into mitochondrial matrix3.39E-02
165GO:0006338: chromatin remodeling3.39E-02
166GO:0007010: cytoskeleton organization3.39E-02
167GO:0009636: response to toxic substance3.52E-02
168GO:0006418: tRNA aminoacylation for protein translation3.63E-02
169GO:0006397: mRNA processing3.73E-02
170GO:0003333: amino acid transmembrane transport3.89E-02
171GO:0016226: iron-sulfur cluster assembly4.14E-02
172GO:0035428: hexose transmembrane transport4.14E-02
173GO:0009736: cytokinin-activated signaling pathway4.22E-02
174GO:0009625: response to insect4.41E-02
175GO:0071215: cellular response to abscisic acid stimulus4.41E-02
176GO:0010082: regulation of root meristem growth4.41E-02
177GO:0009686: gibberellin biosynthetic process4.41E-02
178GO:0010584: pollen exine formation4.68E-02
179GO:0006284: base-excision repair4.68E-02
180GO:0070417: cellular response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
4GO:0052834: inositol monophosphate phosphatase activity0.00E+00
5GO:0019144: ADP-sugar diphosphatase activity0.00E+00
6GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
7GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
8GO:0004401: histidinol-phosphatase activity0.00E+00
9GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
10GO:0003723: RNA binding6.32E-07
11GO:0008805: carbon-monoxide oxygenase activity1.59E-05
12GO:0004519: endonuclease activity8.10E-05
13GO:0001872: (1->3)-beta-D-glucan binding1.11E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.07E-04
15GO:0004830: tryptophan-tRNA ligase activity6.07E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity6.07E-04
17GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.07E-04
18GO:0005227: calcium activated cation channel activity6.07E-04
19GO:0080042: ADP-glucose pyrophosphohydrolase activity6.07E-04
20GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.07E-04
21GO:0005290: L-histidine transmembrane transporter activity6.07E-04
22GO:0003984: acetolactate synthase activity6.07E-04
23GO:0008395: steroid hydroxylase activity6.07E-04
24GO:0042586: peptide deformylase activity6.07E-04
25GO:0052381: tRNA dimethylallyltransferase activity6.07E-04
26GO:0050017: L-3-cyanoalanine synthase activity1.31E-03
27GO:0017118: lipoyltransferase activity1.31E-03
28GO:0003852: 2-isopropylmalate synthase activity1.31E-03
29GO:0080041: ADP-ribose pyrophosphohydrolase activity1.31E-03
30GO:0043425: bHLH transcription factor binding1.31E-03
31GO:0004814: arginine-tRNA ligase activity1.31E-03
32GO:0016415: octanoyltransferase activity1.31E-03
33GO:0004047: aminomethyltransferase activity1.31E-03
34GO:0004766: spermidine synthase activity1.31E-03
35GO:0052832: inositol monophosphate 3-phosphatase activity1.31E-03
36GO:0008934: inositol monophosphate 1-phosphatase activity1.31E-03
37GO:0052833: inositol monophosphate 4-phosphatase activity1.31E-03
38GO:0000064: L-ornithine transmembrane transporter activity1.31E-03
39GO:0004826: phenylalanine-tRNA ligase activity1.31E-03
40GO:0004412: homoserine dehydrogenase activity1.31E-03
41GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.31E-03
42GO:0050736: O-malonyltransferase activity1.31E-03
43GO:1901981: phosphatidylinositol phosphate binding1.31E-03
44GO:0009884: cytokinin receptor activity1.31E-03
45GO:0016805: dipeptidase activity2.15E-03
46GO:0005034: osmosensor activity2.15E-03
47GO:0016707: gibberellin 3-beta-dioxygenase activity2.15E-03
48GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.15E-03
49GO:0004180: carboxypeptidase activity2.15E-03
50GO:0045548: phenylalanine ammonia-lyase activity2.15E-03
51GO:0004148: dihydrolipoyl dehydrogenase activity2.15E-03
52GO:0009982: pseudouridine synthase activity2.58E-03
53GO:0008266: poly(U) RNA binding2.92E-03
54GO:0080031: methyl salicylate esterase activity3.12E-03
55GO:0015189: L-lysine transmembrane transporter activity3.12E-03
56GO:0004072: aspartate kinase activity3.12E-03
57GO:0015181: arginine transmembrane transporter activity3.12E-03
58GO:0017172: cysteine dioxygenase activity3.12E-03
59GO:0005096: GTPase activator activity3.53E-03
60GO:0031418: L-ascorbic acid binding4.05E-03
61GO:0004845: uracil phosphoribosyltransferase activity4.21E-03
62GO:0010011: auxin binding4.21E-03
63GO:0010328: auxin influx transmembrane transporter activity4.21E-03
64GO:0070628: proteasome binding4.21E-03
65GO:0019199: transmembrane receptor protein kinase activity4.21E-03
66GO:0042277: peptide binding4.21E-03
67GO:0016301: kinase activity5.39E-03
68GO:0005471: ATP:ADP antiporter activity5.41E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity5.41E-03
70GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.48E-03
71GO:0030983: mismatched DNA binding6.71E-03
72GO:0080030: methyl indole-3-acetate esterase activity6.71E-03
73GO:0004709: MAP kinase kinase kinase activity6.71E-03
74GO:0031593: polyubiquitin binding6.71E-03
75GO:0004784: superoxide dismutase activity6.71E-03
76GO:0004656: procollagen-proline 4-dioxygenase activity8.11E-03
77GO:0019900: kinase binding8.11E-03
78GO:0004124: cysteine synthase activity8.11E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.11E-03
80GO:0016832: aldehyde-lyase activity8.11E-03
81GO:0004849: uridine kinase activity8.11E-03
82GO:0005525: GTP binding1.04E-02
83GO:0051015: actin filament binding1.15E-02
84GO:0003684: damaged DNA binding1.22E-02
85GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.29E-02
86GO:0016413: O-acetyltransferase activity1.38E-02
87GO:0016597: amino acid binding1.38E-02
88GO:0030247: polysaccharide binding1.73E-02
89GO:0004805: trehalose-phosphatase activity1.84E-02
90GO:0008047: enzyme activator activity1.84E-02
91GO:0004673: protein histidine kinase activity1.84E-02
92GO:0005089: Rho guanyl-nucleotide exchange factor activity2.04E-02
93GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.22E-02
94GO:0000049: tRNA binding2.25E-02
95GO:0016887: ATPase activity2.39E-02
96GO:0003746: translation elongation factor activity2.43E-02
97GO:0015095: magnesium ion transmembrane transporter activity2.46E-02
98GO:0000155: phosphorelay sensor kinase activity2.46E-02
99GO:0015266: protein channel activity2.46E-02
100GO:0003993: acid phosphatase activity2.54E-02
101GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.62E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.68E-02
103GO:0008061: chitin binding2.91E-02
104GO:0004674: protein serine/threonine kinase activity2.92E-02
105GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.15E-02
106GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.15E-02
107GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.15E-02
108GO:0004857: enzyme inhibitor activity3.39E-02
109GO:0043130: ubiquitin binding3.39E-02
110GO:0005528: FK506 binding3.39E-02
111GO:0043621: protein self-association3.39E-02
112GO:0008134: transcription factor binding3.39E-02
113GO:0051087: chaperone binding3.63E-02
114GO:0043424: protein histidine kinase binding3.63E-02
115GO:0003964: RNA-directed DNA polymerase activity3.89E-02
116GO:0016740: transferase activity4.16E-02
117GO:0005524: ATP binding4.33E-02
118GO:0003690: double-stranded DNA binding4.36E-02
119GO:0016760: cellulose synthase (UDP-forming) activity4.41E-02
120GO:0030570: pectate lyase activity4.41E-02
121GO:0003777: microtubule motor activity4.66E-02
122GO:0015171: amino acid transmembrane transporter activity4.66E-02
123GO:0047134: protein-disulfide reductase activity4.95E-02
124GO:0004812: aminoacyl-tRNA ligase activity4.95E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0035452: extrinsic component of plastid membrane0.00E+00
4GO:0000408: EKC/KEOPS complex0.00E+00
5GO:0009507: chloroplast6.08E-10
6GO:0009570: chloroplast stroma1.84E-04
7GO:0009295: nucleoid2.99E-04
8GO:0030529: intracellular ribonucleoprotein complex3.63E-04
9GO:0032541: cortical endoplasmic reticulum6.07E-04
10GO:0009986: cell surface6.85E-04
11GO:0005886: plasma membrane1.01E-03
12GO:0030139: endocytic vesicle2.15E-03
13GO:0009508: plastid chromosome2.58E-03
14GO:0042646: plastid nucleoid3.12E-03
15GO:0032585: multivesicular body membrane3.12E-03
16GO:0032432: actin filament bundle3.12E-03
17GO:0009707: chloroplast outer membrane3.31E-03
18GO:0030663: COPI-coated vesicle membrane4.21E-03
19GO:0009898: cytoplasmic side of plasma membrane4.21E-03
20GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)4.21E-03
21GO:0005759: mitochondrial matrix6.38E-03
22GO:0005871: kinesin complex6.96E-03
23GO:0031305: integral component of mitochondrial inner membrane1.12E-02
24GO:0009501: amyloplast1.12E-02
25GO:0046658: anchored component of plasma membrane1.13E-02
26GO:0009941: chloroplast envelope1.27E-02
27GO:0005680: anaphase-promoting complex1.46E-02
28GO:0042644: chloroplast nucleoid1.46E-02
29GO:0016604: nuclear body1.65E-02
30GO:0030125: clathrin vesicle coat1.84E-02
31GO:0031969: chloroplast membrane1.98E-02
32GO:0005884: actin filament2.04E-02
33GO:0016602: CCAAT-binding factor complex2.46E-02
34GO:0009574: preprophase band2.46E-02
35GO:0030095: chloroplast photosystem II2.68E-02
36GO:0005768: endosome3.29E-02
37GO:0005856: cytoskeleton3.52E-02
38GO:0009654: photosystem II oxygen evolving complex3.63E-02
39GO:0009532: plastid stroma3.89E-02
40GO:0009579: thylakoid4.02E-02
41GO:0009534: chloroplast thylakoid4.09E-02
42GO:0015629: actin cytoskeleton4.41E-02
43GO:0005744: mitochondrial inner membrane presequence translocase complex4.68E-02
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Gene type



Gene DE type