co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0019685: photosynthesis, dark reaction	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0009583: detection of light stimulus	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0006114: glycerol biosynthetic process	0.00E+00
9	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
10	GO:2001141: regulation of RNA biosynthetic process	1.83E-05
11	GO:0010080: regulation of floral meristem growth	2.16E-04
12	GO:0042547: cell wall modification involved in multidimensional cell growth	2.16E-04
13	GO:0072387: flavin adenine dinucleotide metabolic process	2.16E-04
14	GO:0043087: regulation of GTPase activity	2.16E-04
15	GO:2000021: regulation of ion homeostasis	2.16E-04
16	GO:0043609: regulation of carbon utilization	2.16E-04
17	GO:0006436: tryptophanyl-tRNA aminoacylation	2.16E-04
18	GO:0000066: mitochondrial ornithine transport	2.16E-04
19	GO:0006419: alanyl-tRNA aminoacylation	2.16E-04
20	GO:0043266: regulation of potassium ion transport	2.16E-04
21	GO:0071482: cellular response to light stimulus	2.29E-04
22	GO:0000373: Group II intron splicing	2.78E-04
23	GO:0006352: DNA-templated transcription, initiation	4.49E-04
24	GO:0001736: establishment of planar polarity	4.81E-04
25	GO:0010343: singlet oxygen-mediated programmed cell death	4.81E-04
26	GO:1901529: positive regulation of anion channel activity	4.81E-04
27	GO:0048255: mRNA stabilization	4.81E-04
28	GO:0010569: regulation of double-strand break repair via homologous recombination	4.81E-04
29	GO:0010617: circadian regulation of calcium ion oscillation	4.81E-04
30	GO:0006435: threonyl-tRNA aminoacylation	4.81E-04
31	GO:0099402: plant organ development	4.81E-04
32	GO:0006094: gluconeogenesis	5.83E-04
33	GO:0006696: ergosterol biosynthetic process	7.83E-04
34	GO:1902448: positive regulation of shade avoidance	7.83E-04
35	GO:0006000: fructose metabolic process	7.83E-04
36	GO:0010022: meristem determinacy	7.83E-04
37	GO:1901672: positive regulation of systemic acquired resistance	7.83E-04
38	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.83E-04
39	GO:0010623: programmed cell death involved in cell development	7.83E-04
40	GO:0080055: low-affinity nitrate transport	7.83E-04
41	GO:0051639: actin filament network formation	1.12E-03
42	GO:0034059: response to anoxia	1.12E-03
43	GO:1901332: negative regulation of lateral root development	1.12E-03
44	GO:0009664: plant-type cell wall organization	1.18E-03
45	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.29E-03
46	GO:0051781: positive regulation of cell division	1.48E-03
47	GO:0051764: actin crosslink formation	1.48E-03
48	GO:0051322: anaphase	1.48E-03
49	GO:0006661: phosphatidylinositol biosynthetic process	1.48E-03
50	GO:0010508: positive regulation of autophagy	1.48E-03
51	GO:1902347: response to strigolactone	1.48E-03
52	GO:0016117: carotenoid biosynthetic process	1.51E-03
53	GO:0010236: plastoquinone biosynthetic process	1.89E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	1.89E-03
55	GO:1902183: regulation of shoot apical meristem development	1.89E-03
56	GO:0016123: xanthophyll biosynthetic process	1.89E-03
57	GO:0010158: abaxial cell fate specification	1.89E-03
58	GO:0006465: signal peptide processing	1.89E-03
59	GO:0080110: sporopollenin biosynthetic process	1.89E-03
60	GO:0010117: photoprotection	1.89E-03
61	GO:0046283: anthocyanin-containing compound metabolic process	1.89E-03
62	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.33E-03
63	GO:0060918: auxin transport	2.33E-03
64	GO:1901371: regulation of leaf morphogenesis	2.33E-03
65	GO:0009828: plant-type cell wall loosening	2.62E-03
66	GO:0010310: regulation of hydrogen peroxide metabolic process	2.80E-03
67	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.80E-03
68	GO:0051510: regulation of unidimensional cell growth	3.30E-03
69	GO:0006955: immune response	3.30E-03
70	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.30E-03
71	GO:0006400: tRNA modification	3.30E-03
72	GO:0009793: embryo development ending in seed dormancy	3.46E-03
73	GO:0045010: actin nucleation	3.82E-03
74	GO:0000105: histidine biosynthetic process	3.82E-03
75	GO:0048564: photosystem I assembly	3.82E-03
76	GO:0042255: ribosome assembly	3.82E-03
77	GO:0006353: DNA-templated transcription, termination	3.82E-03
78	GO:0045490: pectin catabolic process	4.02E-03
79	GO:0018298: protein-chromophore linkage	4.06E-03
80	GO:0009932: cell tip growth	4.38E-03
81	GO:0006002: fructose 6-phosphate metabolic process	4.38E-03
82	GO:0022900: electron transport chain	4.38E-03
83	GO:0009657: plastid organization	4.38E-03
84	GO:0006098: pentose-phosphate shunt	4.95E-03
85	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.95E-03
86	GO:0010206: photosystem II repair	4.95E-03
87	GO:2000024: regulation of leaf development	4.95E-03
88	GO:0009637: response to blue light	5.14E-03
89	GO:1900426: positive regulation of defense response to bacterium	5.56E-03
90	GO:0009638: phototropism	5.56E-03
91	GO:0006839: mitochondrial transport	5.86E-03
92	GO:0048829: root cap development	6.18E-03
93	GO:0006949: syncytium formation	6.18E-03
94	GO:0006259: DNA metabolic process	6.18E-03
95	GO:0006535: cysteine biosynthetic process from serine	6.18E-03
96	GO:0010114: response to red light	6.63E-03
97	GO:0009750: response to fructose	6.84E-03
98	GO:0048765: root hair cell differentiation	6.84E-03
99	GO:0006265: DNA topological change	6.84E-03
100	GO:0006415: translational termination	6.84E-03
101	GO:0009658: chloroplast organization	7.01E-03
102	GO:0045037: protein import into chloroplast stroma	7.51E-03
103	GO:0010582: floral meristem determinacy	7.51E-03
104	GO:0030036: actin cytoskeleton organization	8.22E-03
105	GO:0010075: regulation of meristem growth	8.22E-03
106	GO:0009785: blue light signaling pathway	8.22E-03
107	GO:0010207: photosystem II assembly	8.94E-03
108	GO:0090351: seedling development	9.69E-03
109	GO:0010053: root epidermal cell differentiation	9.69E-03
110	GO:0080188: RNA-directed DNA methylation	9.69E-03
111	GO:0006096: glycolytic process	1.06E-02
112	GO:0048316: seed development	1.09E-02
113	GO:0006289: nucleotide-excision repair	1.12E-02
114	GO:2000377: regulation of reactive oxygen species metabolic process	1.12E-02
115	GO:0019344: cysteine biosynthetic process	1.12E-02
116	GO:0009944: polarity specification of adaxial/abaxial axis	1.12E-02
117	GO:0051017: actin filament bundle assembly	1.12E-02
118	GO:0010073: meristem maintenance	1.21E-02
119	GO:0006418: tRNA aminoacylation for protein translation	1.21E-02
120	GO:0016998: cell wall macromolecule catabolic process	1.29E-02
121	GO:0015992: proton transport	1.29E-02
122	GO:0048511: rhythmic process	1.29E-02
123	GO:0010431: seed maturation	1.29E-02
124	GO:0003333: amino acid transmembrane transport	1.29E-02
125	GO:0009814: defense response, incompatible interaction	1.37E-02
126	GO:0035428: hexose transmembrane transport	1.37E-02
127	GO:0006730: one-carbon metabolic process	1.37E-02
128	GO:0010089: xylem development	1.55E-02
129	GO:0010584: pollen exine formation	1.55E-02
130	GO:0006284: base-excision repair	1.55E-02
131	GO:0019722: calcium-mediated signaling	1.55E-02
132	GO:0008033: tRNA processing	1.74E-02
133	GO:0010118: stomatal movement	1.74E-02
134	GO:0046323: glucose import	1.83E-02
135	GO:0010268: brassinosteroid homeostasis	1.83E-02
136	GO:0009958: positive gravitropism	1.83E-02
137	GO:0010154: fruit development	1.83E-02
138	GO:0042752: regulation of circadian rhythm	1.93E-02
139	GO:0007059: chromosome segregation	1.93E-02
140	GO:0009646: response to absence of light	1.93E-02
141	GO:0008654: phospholipid biosynthetic process	2.02E-02
142	GO:0009749: response to glucose	2.02E-02
143	GO:0016132: brassinosteroid biosynthetic process	2.12E-02
144	GO:0032502: developmental process	2.23E-02
145	GO:0010583: response to cyclopentenone	2.23E-02
146	GO:0009451: RNA modification	2.26E-02
147	GO:0010090: trichome morphogenesis	2.33E-02
148	GO:0016125: sterol metabolic process	2.44E-02
149	GO:0007267: cell-cell signaling	2.54E-02
150	GO:0000910: cytokinesis	2.65E-02
151	GO:0009911: positive regulation of flower development	2.76E-02
152	GO:0001666: response to hypoxia	2.76E-02
153	GO:0010411: xyloglucan metabolic process	3.10E-02
154	GO:0009416: response to light stimulus	3.11E-02
155	GO:0016311: dephosphorylation	3.22E-02
156	GO:0009826: unidimensional cell growth	3.29E-02
157	GO:0009817: defense response to fungus, incompatible interaction	3.34E-02
158	GO:0048481: plant ovule development	3.34E-02
159	GO:0010311: lateral root formation	3.46E-02
160	GO:0010218: response to far red light	3.58E-02
161	GO:0006499: N-terminal protein myristoylation	3.58E-02
162	GO:0007568: aging	3.70E-02
163	GO:0006865: amino acid transport	3.82E-02
164	GO:0009853: photorespiration	3.95E-02
165	GO:0080167: response to karrikin	4.23E-02
166	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.38E-02
167	GO:0006631: fatty acid metabolic process	4.46E-02
168	GO:0006508: proteolysis	4.70E-02
169	GO:0009926: auxin polar transport	4.73E-02
170	GO:0009744: response to sucrose	4.73E-02
171	GO:0009640: photomorphogenesis	4.73E-02
172	GO:0042546: cell wall biogenesis	4.86E-02
173	GO:0009644: response to high light intensity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
9	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
10	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0001053: plastid sigma factor activity	3.35E-05
13	GO:0016987: sigma factor activity	3.35E-05
14	GO:0030570: pectate lyase activity	9.54E-05
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.16E-04
16	GO:0004830: tryptophan-tRNA ligase activity	2.16E-04
17	GO:0003879: ATP phosphoribosyltransferase activity	2.16E-04
18	GO:0042834: peptidoglycan binding	2.16E-04
19	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.16E-04
20	GO:0004813: alanine-tRNA ligase activity	2.16E-04
21	GO:0005290: L-histidine transmembrane transporter activity	2.16E-04
22	GO:0051996: squalene synthase activity	2.16E-04
23	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.16E-04
24	GO:0050017: L-3-cyanoalanine synthase activity	4.81E-04
25	GO:0005094: Rho GDP-dissociation inhibitor activity	4.81E-04
26	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.81E-04
27	GO:0000064: L-ornithine transmembrane transporter activity	4.81E-04
28	GO:0004829: threonine-tRNA ligase activity	4.81E-04
29	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.81E-04
30	GO:0005096: GTPase activator activity	5.12E-04
31	GO:0016805: dipeptidase activity	7.83E-04
32	GO:0052692: raffinose alpha-galactosidase activity	7.83E-04
33	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.83E-04
34	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	7.83E-04
35	GO:0003913: DNA photolyase activity	7.83E-04
36	GO:0004557: alpha-galactosidase activity	7.83E-04
37	GO:0009882: blue light photoreceptor activity	1.12E-03
38	GO:0004300: enoyl-CoA hydratase activity	1.12E-03
39	GO:0015189: L-lysine transmembrane transporter activity	1.12E-03
40	GO:0015181: arginine transmembrane transporter activity	1.12E-03
41	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.12E-03
42	GO:0016149: translation release factor activity, codon specific	1.12E-03
43	GO:0010011: auxin binding	1.48E-03
44	GO:0010328: auxin influx transmembrane transporter activity	1.48E-03
45	GO:0070628: proteasome binding	1.48E-03
46	GO:0005471: ATP:ADP antiporter activity	1.89E-03
47	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.89E-03
48	GO:0008725: DNA-3-methyladenine glycosylase activity	1.89E-03
49	GO:0004518: nuclease activity	2.31E-03
50	GO:2001070: starch binding	2.33E-03
51	GO:0004332: fructose-bisphosphate aldolase activity	2.33E-03
52	GO:0031593: polyubiquitin binding	2.33E-03
53	GO:0004656: procollagen-proline 4-dioxygenase activity	2.80E-03
54	GO:0004124: cysteine synthase activity	2.80E-03
55	GO:0016829: lyase activity	2.95E-03
56	GO:0046872: metal ion binding	3.22E-03
57	GO:0004427: inorganic diphosphatase activity	3.30E-03
58	GO:0009881: photoreceptor activity	3.30E-03
59	GO:0008312: 7S RNA binding	3.82E-03
60	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.38E-03
61	GO:0003747: translation release factor activity	4.95E-03
62	GO:0071949: FAD binding	4.95E-03
63	GO:0030955: potassium ion binding	5.56E-03
64	GO:0004743: pyruvate kinase activity	5.56E-03
65	GO:0004161: dimethylallyltranstransferase activity	6.84E-03
66	GO:0000049: tRNA binding	7.51E-03
67	GO:0003723: RNA binding	8.04E-03
68	GO:0003725: double-stranded RNA binding	8.22E-03
69	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.94E-03
70	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.94E-03
71	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.05E-02
72	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.05E-02
73	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.05E-02
74	GO:0031418: L-ascorbic acid binding	1.12E-02
75	GO:0043130: ubiquitin binding	1.12E-02
76	GO:0003727: single-stranded RNA binding	1.55E-02
77	GO:0004812: aminoacyl-tRNA ligase activity	1.64E-02
78	GO:0008536: Ran GTPase binding	1.83E-02
79	GO:0005355: glucose transmembrane transporter activity	1.93E-02
80	GO:0010181: FMN binding	1.93E-02
81	GO:0050662: coenzyme binding	1.93E-02
82	GO:0019901: protein kinase binding	2.02E-02
83	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.06E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.12E-02
85	GO:0051015: actin filament binding	2.33E-02
86	GO:0003684: damaged DNA binding	2.44E-02
87	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.54E-02
88	GO:0008237: metallopeptidase activity	2.54E-02
89	GO:0016597: amino acid binding	2.65E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.10E-02
91	GO:0008236: serine-type peptidase activity	3.22E-02
92	GO:0000287: magnesium ion binding	3.36E-02
93	GO:0004222: metalloendopeptidase activity	3.58E-02
94	GO:0004672: protein kinase activity	4.13E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.38E-02
96	GO:0004185: serine-type carboxypeptidase activity	4.73E-02
97	GO:0051537: 2 iron, 2 sulfur cluster binding	5.00E-02
98	GO:0043621: protein self-association	5.00E-02
99	GO:0035091: phosphatidylinositol binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.45E-13
2	GO:0009570: chloroplast stroma	2.67E-04
3	GO:0080085: signal recognition particle, chloroplast targeting	4.81E-04
4	GO:0009574: preprophase band	5.83E-04
5	GO:0016605: PML body	7.83E-04
6	GO:0046658: anchored component of plasma membrane	1.08E-03
7	GO:0032432: actin filament bundle	1.12E-03
8	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.48E-03
9	GO:0031209: SCAR complex	2.33E-03
10	GO:0005655: nucleolar ribonuclease P complex	2.80E-03
11	GO:0030529: intracellular ribonucleoprotein complex	3.12E-03
12	GO:0009535: chloroplast thylakoid membrane	3.22E-03
13	GO:0009986: cell surface	3.30E-03
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.38E-03
15	GO:0031225: anchored component of membrane	4.45E-03
16	GO:0016604: nuclear body	5.56E-03
17	GO:0005884: actin filament	6.84E-03
18	GO:0000311: plastid large ribosomal subunit	7.51E-03
19	GO:0005578: proteinaceous extracellular matrix	8.22E-03
20	GO:0031969: chloroplast membrane	9.22E-03
21	GO:0009505: plant-type cell wall	1.04E-02
22	GO:0042651: thylakoid membrane	1.21E-02
23	GO:0009532: plastid stroma	1.29E-02
24	GO:0005886: plasma membrane	2.37E-02
25	GO:0009295: nucleoid	2.54E-02
26	GO:0009536: plastid	3.19E-02
27	GO:0015934: large ribosomal subunit	3.70E-02
28	GO:0005874: microtubule	4.09E-02
29	GO:0031977: thylakoid lumen	4.46E-02
30	GO:0005773: vacuole	4.89E-02