co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006216: cytidine catabolic process	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0048034: heme O biosynthetic process	0.00E+00
4	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.59E-05
7	GO:0010120: camalexin biosynthetic process	5.19E-05
8	GO:0009821: alkaloid biosynthetic process	6.45E-05
9	GO:1901430: positive regulation of syringal lignin biosynthetic process	8.09E-05
10	GO:0006144: purine nucleobase metabolic process	8.09E-05
11	GO:0019628: urate catabolic process	8.09E-05
12	GO:0042742: defense response to bacterium	1.15E-04
13	GO:0010372: positive regulation of gibberellin biosynthetic process	1.93E-04
14	GO:0015865: purine nucleotide transport	1.93E-04
15	GO:0043132: NAD transport	1.93E-04
16	GO:0006996: organelle organization	1.93E-04
17	GO:0046939: nucleotide phosphorylation	1.93E-04
18	GO:0030433: ubiquitin-dependent ERAD pathway	3.23E-04
19	GO:0055074: calcium ion homeostasis	3.24E-04
20	GO:0010359: regulation of anion channel activity	3.24E-04
21	GO:0044375: regulation of peroxisome size	3.24E-04
22	GO:0055114: oxidation-reduction process	4.12E-04
23	GO:0046902: regulation of mitochondrial membrane permeability	4.66E-04
24	GO:0015858: nucleoside transport	4.66E-04
25	GO:0001676: long-chain fatty acid metabolic process	4.66E-04
26	GO:0009058: biosynthetic process	5.28E-04
27	GO:0009851: auxin biosynthetic process	5.54E-04
28	GO:0042744: hydrogen peroxide catabolic process	5.81E-04
29	GO:0006536: glutamate metabolic process	6.21E-04
30	GO:1901657: glycosyl compound metabolic process	6.71E-04
31	GO:0046283: anthocyanin-containing compound metabolic process	7.86E-04
32	GO:0006564: L-serine biosynthetic process	7.86E-04
33	GO:0097428: protein maturation by iron-sulfur cluster transfer	7.86E-04
34	GO:0009615: response to virus	8.44E-04
35	GO:0009228: thiamine biosynthetic process	9.59E-04
36	GO:0009972: cytidine deamination	9.59E-04
37	GO:0006561: proline biosynthetic process	9.59E-04
38	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.59E-04
39	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.14E-03
40	GO:0006499: N-terminal protein myristoylation	1.19E-03
41	GO:1900056: negative regulation of leaf senescence	1.34E-03
42	GO:0046686: response to cadmium ion	1.39E-03
43	GO:0006099: tricarboxylic acid cycle	1.42E-03
44	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.54E-03
45	GO:0006402: mRNA catabolic process	1.54E-03
46	GO:0006102: isocitrate metabolic process	1.54E-03
47	GO:0006839: mitochondrial transport	1.55E-03
48	GO:0010204: defense response signaling pathway, resistance gene-independent	1.76E-03
49	GO:0006783: heme biosynthetic process	1.98E-03
50	GO:0009688: abscisic acid biosynthetic process	2.46E-03
51	GO:0043069: negative regulation of programmed cell death	2.46E-03
52	GO:0009682: induced systemic resistance	2.71E-03
53	GO:0052544: defense response by callose deposition in cell wall	2.71E-03
54	GO:0072593: reactive oxygen species metabolic process	2.71E-03
55	GO:0006096: glycolytic process	2.75E-03
56	GO:0009626: plant-type hypersensitive response	2.93E-03
57	GO:0002213: defense response to insect	2.97E-03
58	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	2.97E-03
59	GO:0006790: sulfur compound metabolic process	2.97E-03
60	GO:0009620: response to fungus	3.03E-03
61	GO:0006807: nitrogen compound metabolic process	3.24E-03
62	GO:0009718: anthocyanin-containing compound biosynthetic process	3.24E-03
63	GO:0006829: zinc II ion transport	3.24E-03
64	GO:0034605: cellular response to heat	3.52E-03
65	GO:0010167: response to nitrate	3.81E-03
66	GO:0046854: phosphatidylinositol phosphorylation	3.81E-03
67	GO:0007031: peroxisome organization	3.81E-03
68	GO:0006952: defense response	3.90E-03
69	GO:0000162: tryptophan biosynthetic process	4.10E-03
70	GO:0015031: protein transport	4.35E-03
71	GO:0045333: cellular respiration	4.40E-03
72	GO:0005992: trehalose biosynthetic process	4.40E-03
73	GO:0010150: leaf senescence	5.69E-03
74	GO:0009561: megagametogenesis	6.01E-03
75	GO:0009306: protein secretion	6.01E-03
76	GO:0010089: xylem development	6.01E-03
77	GO:0051028: mRNA transport	6.35E-03
78	GO:0055085: transmembrane transport	7.57E-03
79	GO:0010183: pollen tube guidance	7.79E-03
80	GO:0010193: response to ozone	8.17E-03
81	GO:0031047: gene silencing by RNA	8.56E-03
82	GO:0009630: gravitropism	8.56E-03
83	GO:0006914: autophagy	9.34E-03
84	GO:0009723: response to ethylene	1.02E-02
85	GO:0045454: cell redox homeostasis	1.31E-02
86	GO:0006979: response to oxidative stress	1.38E-02
87	GO:0010119: regulation of stomatal movement	1.41E-02
88	GO:0007568: aging	1.41E-02
89	GO:0050832: defense response to fungus	1.57E-02
90	GO:0009751: response to salicylic acid	1.59E-02
91	GO:0030001: metal ion transport	1.65E-02
92	GO:0006397: mRNA processing	1.69E-02
93	GO:0006631: fatty acid metabolic process	1.70E-02
94	GO:0006897: endocytosis	1.70E-02
95	GO:0009753: response to jasmonic acid	1.73E-02
96	GO:0009926: auxin polar transport	1.80E-02
97	GO:0051707: response to other organism	1.80E-02
98	GO:0031347: regulation of defense response	2.07E-02
99	GO:0009664: plant-type cell wall organization	2.12E-02
100	GO:0042538: hyperosmotic salinity response	2.12E-02
101	GO:0009809: lignin biosynthetic process	2.23E-02
102	GO:0009735: response to cytokinin	2.63E-02
103	GO:0009555: pollen development	2.87E-02
104	GO:0018105: peptidyl-serine phosphorylation	2.93E-02
105	GO:0007165: signal transduction	3.44E-02
106	GO:0006511: ubiquitin-dependent protein catabolic process	3.89E-02
107	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.58E-02
108	GO:0009739: response to gibberellin	4.58E-02
109	GO:0007166: cell surface receptor signaling pathway	4.65E-02
110	GO:0009617: response to bacterium	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0047844: deoxycytidine deaminase activity	0.00E+00
4	GO:0004846: urate oxidase activity	0.00E+00
5	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
6	GO:0044610: FMN transmembrane transporter activity	0.00E+00
7	GO:0008495: protoheme IX farnesyltransferase activity	0.00E+00
8	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
9	GO:0036402: proteasome-activating ATPase activity	1.59E-05
10	GO:0030955: potassium ion binding	7.87E-05
11	GO:0016844: strictosidine synthase activity	7.87E-05
12	GO:0004743: pyruvate kinase activity	7.87E-05
13	GO:0019786: Atg8-specific protease activity	8.09E-05
14	GO:0047326: inositol tetrakisphosphate 5-kinase activity	8.09E-05
15	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	8.09E-05
16	GO:0048037: cofactor binding	8.09E-05
17	GO:0015230: FAD transmembrane transporter activity	8.09E-05
18	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	8.09E-05
19	GO:0010013: N-1-naphthylphthalamic acid binding	8.09E-05
20	GO:0000824: inositol tetrakisphosphate 3-kinase activity	8.09E-05
21	GO:0033984: indole-3-glycerol-phosphate lyase activity	8.09E-05
22	GO:0008794: arsenate reductase (glutaredoxin) activity	1.11E-04
23	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.93E-04
24	GO:0019779: Atg8 activating enzyme activity	1.93E-04
25	GO:0017025: TBP-class protein binding	1.93E-04
26	GO:0019172: glyoxalase III activity	1.93E-04
27	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.93E-04
28	GO:0004566: beta-glucuronidase activity	1.93E-04
29	GO:0015228: coenzyme A transmembrane transporter activity	1.93E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	1.93E-04
31	GO:0051724: NAD transporter activity	1.93E-04
32	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	3.24E-04
33	GO:0019201: nucleotide kinase activity	4.66E-04
34	GO:0004449: isocitrate dehydrogenase (NAD+) activity	4.66E-04
35	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	4.66E-04
36	GO:0004351: glutamate decarboxylase activity	4.66E-04
37	GO:0004031: aldehyde oxidase activity	6.21E-04
38	GO:0050302: indole-3-acetaldehyde oxidase activity	6.21E-04
39	GO:0019776: Atg8 ligase activity	6.21E-04
40	GO:0004659: prenyltransferase activity	6.21E-04
41	GO:0004834: tryptophan synthase activity	6.21E-04
42	GO:0080122: AMP transmembrane transporter activity	7.86E-04
43	GO:0005471: ATP:ADP antiporter activity	7.86E-04
44	GO:0031593: polyubiquitin binding	9.59E-04
45	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.59E-04
46	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	9.59E-04
47	GO:0004126: cytidine deaminase activity	1.14E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.14E-03
49	GO:0102391: decanoate--CoA ligase activity	1.14E-03
50	GO:0004017: adenylate kinase activity	1.14E-03
51	GO:0005347: ATP transmembrane transporter activity	1.14E-03
52	GO:0004656: procollagen-proline 4-dioxygenase activity	1.14E-03
53	GO:0015217: ADP transmembrane transporter activity	1.14E-03
54	GO:0000287: magnesium ion binding	1.24E-03
55	GO:0004601: peroxidase activity	1.26E-03
56	GO:0004467: long-chain fatty acid-CoA ligase activity	1.34E-03
57	GO:0008422: beta-glucosidase activity	1.48E-03
58	GO:0004311: farnesyltranstransferase activity	1.54E-03
59	GO:0005198: structural molecule activity	1.96E-03
60	GO:0051287: NAD binding	2.10E-03
61	GO:0004177: aminopeptidase activity	2.71E-03
62	GO:0009055: electron carrier activity	2.95E-03
63	GO:0004521: endoribonuclease activity	2.97E-03
64	GO:0004022: alcohol dehydrogenase (NAD) activity	3.24E-03
65	GO:0015035: protein disulfide oxidoreductase activity	3.40E-03
66	GO:0005524: ATP binding	4.13E-03
67	GO:0031418: L-ascorbic acid binding	4.40E-03
68	GO:0030170: pyridoxal phosphate binding	4.58E-03
69	GO:0008565: protein transporter activity	4.93E-03
70	GO:0020037: heme binding	6.03E-03
71	GO:0005199: structural constituent of cell wall	7.06E-03
72	GO:0046873: metal ion transmembrane transporter activity	7.06E-03
73	GO:0004518: nuclease activity	8.56E-03
74	GO:0016788: hydrolase activity, acting on ester bonds	8.96E-03
75	GO:0043531: ADP binding	9.65E-03
76	GO:0016597: amino acid binding	1.02E-02
77	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.14E-02
78	GO:0102483: scopolin beta-glucosidase activity	1.19E-02
79	GO:0004683: calmodulin-dependent protein kinase activity	1.19E-02
80	GO:0052689: carboxylic ester hydrolase activity	1.21E-02
81	GO:0005509: calcium ion binding	1.24E-02
82	GO:0016301: kinase activity	1.26E-02
83	GO:0005506: iron ion binding	1.34E-02
84	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.41E-02
85	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.51E-02
86	GO:0004364: glutathione transferase activity	1.75E-02
87	GO:0051537: 2 iron, 2 sulfur cluster binding	1.91E-02
88	GO:0016887: ATPase activity	2.51E-02
89	GO:0000166: nucleotide binding	2.87E-02
90	GO:0051082: unfolded protein binding	2.87E-02
91	GO:0008026: ATP-dependent helicase activity	2.99E-02
92	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.78E-02
93	GO:0030246: carbohydrate binding	3.85E-02
94	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.02E-02
95	GO:0005507: copper ion binding	4.08E-02
96	GO:0015297: antiporter activity	4.09E-02
97	GO:0005516: calmodulin binding	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0046861: glyoxysomal membrane	1.37E-06
2	GO:0031597: cytosolic proteasome complex	2.28E-05
3	GO:0031595: nuclear proteasome complex	3.11E-05
4	GO:0009514: glyoxysome	5.19E-05
5	GO:0008540: proteasome regulatory particle, base subcomplex	7.87E-05
6	GO:0016442: RISC complex	8.09E-05
7	GO:0005829: cytosol	1.98E-04
8	GO:0000502: proteasome complex	2.32E-04
9	GO:0009530: primary cell wall	3.24E-04
10	GO:0005775: vacuolar lumen	4.66E-04
11	GO:0005776: autophagosome	6.21E-04
12	GO:0000421: autophagosome membrane	1.54E-03
13	GO:0005779: integral component of peroxisomal membrane	1.76E-03
14	GO:0005783: endoplasmic reticulum	1.90E-03
15	GO:0010494: cytoplasmic stress granule	1.98E-03
16	GO:0005618: cell wall	2.01E-03
17	GO:0005743: mitochondrial inner membrane	2.47E-03
18	GO:0005635: nuclear envelope	2.50E-03
19	GO:0005765: lysosomal membrane	2.71E-03
20	GO:0048471: perinuclear region of cytoplasm	2.71E-03
21	GO:0005773: vacuole	3.58E-03
22	GO:0031410: cytoplasmic vesicle	5.34E-03
23	GO:0005774: vacuolar membrane	5.64E-03
24	GO:0005777: peroxisome	6.66E-03
25	GO:0005778: peroxisomal membrane	9.75E-03
26	GO:0000932: P-body	1.06E-02
27	GO:0005788: endoplasmic reticulum lumen	1.10E-02
28	GO:0009707: chloroplast outer membrane	1.27E-02
29	GO:0005643: nuclear pore	1.27E-02
30	GO:0016020: membrane	1.31E-02
31	GO:0005794: Golgi apparatus	1.45E-02
32	GO:0090406: pollen tube	1.80E-02
33	GO:0005834: heterotrimeric G-protein complex	2.63E-02
34	GO:0005886: plasma membrane	2.68E-02