co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G47630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
8	GO:0009715: chalcone biosynthetic process	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0042820: vitamin B6 catabolic process	0.00E+00
12	GO:1901259: chloroplast rRNA processing	4.60E-08
13	GO:0015979: photosynthesis	1.04E-07
14	GO:0009773: photosynthetic electron transport in photosystem I	1.40E-06
15	GO:0015995: chlorophyll biosynthetic process	9.20E-06
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.63E-05
17	GO:0010190: cytochrome b6f complex assembly	1.84E-04
18	GO:0009228: thiamine biosynthetic process	1.84E-04
19	GO:0009768: photosynthesis, light harvesting in photosystem I	1.92E-04
20	GO:0006810: transport	2.67E-04
21	GO:0010114: response to red light	3.63E-04
22	GO:0006659: phosphatidylserine biosynthetic process	3.65E-04
23	GO:0065002: intracellular protein transmembrane transport	3.65E-04
24	GO:0034337: RNA folding	3.65E-04
25	GO:0005991: trehalose metabolic process	3.65E-04
26	GO:0000476: maturation of 4.5S rRNA	3.65E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	3.65E-04
28	GO:0000967: rRNA 5'-end processing	3.65E-04
29	GO:0046467: membrane lipid biosynthetic process	3.65E-04
30	GO:0043953: protein transport by the Tat complex	3.65E-04
31	GO:0015671: oxygen transport	3.65E-04
32	GO:0006353: DNA-templated transcription, termination	4.05E-04
33	GO:0032544: plastid translation	4.96E-04
34	GO:0009657: plastid organization	4.96E-04
35	GO:0019252: starch biosynthetic process	5.18E-04
36	GO:0009791: post-embryonic development	5.18E-04
37	GO:0006098: pentose-phosphate shunt	5.94E-04
38	GO:0032502: developmental process	6.14E-04
39	GO:0005982: starch metabolic process	7.02E-04
40	GO:0071457: cellular response to ozone	7.94E-04
41	GO:1904143: positive regulation of carotenoid biosynthetic process	7.94E-04
42	GO:0034470: ncRNA processing	7.94E-04
43	GO:0051645: Golgi localization	7.94E-04
44	GO:0009629: response to gravity	7.94E-04
45	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.94E-04
46	GO:0010541: acropetal auxin transport	7.94E-04
47	GO:0034755: iron ion transmembrane transport	7.94E-04
48	GO:0060151: peroxisome localization	7.94E-04
49	GO:0018119: peptidyl-cysteine S-nitrosylation	9.42E-04
50	GO:0019684: photosynthesis, light reaction	9.42E-04
51	GO:0006094: gluconeogenesis	1.22E-03
52	GO:0009767: photosynthetic electron transport chain	1.22E-03
53	GO:0030048: actin filament-based movement	1.22E-03
54	GO:0055114: oxidation-reduction process	1.23E-03
55	GO:0005977: glycogen metabolic process	1.29E-03
56	GO:0006954: inflammatory response	1.29E-03
57	GO:0090391: granum assembly	1.29E-03
58	GO:0009405: pathogenesis	1.29E-03
59	GO:0051646: mitochondrion localization	1.29E-03
60	GO:0010160: formation of animal organ boundary	1.29E-03
61	GO:0090436: leaf pavement cell development	1.29E-03
62	GO:0048467: gynoecium development	1.37E-03
63	GO:0010143: cutin biosynthetic process	1.37E-03
64	GO:0010218: response to far red light	1.42E-03
65	GO:0009637: response to blue light	1.69E-03
66	GO:0071484: cellular response to light intensity	1.85E-03
67	GO:0009152: purine ribonucleotide biosynthetic process	1.85E-03
68	GO:0046653: tetrahydrofolate metabolic process	1.85E-03
69	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.85E-03
70	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.85E-03
71	GO:0010021: amylopectin biosynthetic process	2.49E-03
72	GO:0071486: cellular response to high light intensity	2.49E-03
73	GO:0009765: photosynthesis, light harvesting	2.49E-03
74	GO:0006109: regulation of carbohydrate metabolic process	2.49E-03
75	GO:0010107: potassium ion import	2.49E-03
76	GO:0015994: chlorophyll metabolic process	2.49E-03
77	GO:0006546: glycine catabolic process	2.49E-03
78	GO:0006021: inositol biosynthetic process	2.49E-03
79	GO:0006564: L-serine biosynthetic process	3.18E-03
80	GO:0010236: plastoquinone biosynthetic process	3.18E-03
81	GO:0006465: signal peptide processing	3.18E-03
82	GO:0071493: cellular response to UV-B	3.18E-03
83	GO:0098719: sodium ion import across plasma membrane	3.18E-03
84	GO:0009958: positive gravitropism	3.76E-03
85	GO:0050665: hydrogen peroxide biosynthetic process	3.93E-03
86	GO:0006751: glutathione catabolic process	3.93E-03
87	GO:0042549: photosystem II stabilization	3.93E-03
88	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.93E-03
89	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.93E-03
90	GO:0060918: auxin transport	3.93E-03
91	GO:1902456: regulation of stomatal opening	3.93E-03
92	GO:0006096: glycolytic process	4.23E-03
93	GO:0009658: chloroplast organization	4.43E-03
94	GO:0010189: vitamin E biosynthetic process	4.74E-03
95	GO:0009854: oxidative photosynthetic carbon pathway	4.74E-03
96	GO:0009955: adaxial/abaxial pattern specification	4.74E-03
97	GO:0009645: response to low light intensity stimulus	5.60E-03
98	GO:0009769: photosynthesis, light harvesting in photosystem II	5.60E-03
99	GO:0070413: trehalose metabolism in response to stress	6.51E-03
100	GO:0031540: regulation of anthocyanin biosynthetic process	6.51E-03
101	GO:0055075: potassium ion homeostasis	6.51E-03
102	GO:0052543: callose deposition in cell wall	6.51E-03
103	GO:0016559: peroxisome fission	6.51E-03
104	GO:0048564: photosystem I assembly	6.51E-03
105	GO:0042255: ribosome assembly	6.51E-03
106	GO:0010078: maintenance of root meristem identity	6.51E-03
107	GO:0010027: thylakoid membrane organization	6.72E-03
108	GO:0010204: defense response signaling pathway, resistance gene-independent	7.47E-03
109	GO:0043562: cellular response to nitrogen levels	7.47E-03
110	GO:0017004: cytochrome complex assembly	7.47E-03
111	GO:0019430: removal of superoxide radicals	7.47E-03
112	GO:0009416: response to light stimulus	7.96E-03
113	GO:0009821: alkaloid biosynthetic process	8.47E-03
114	GO:0019432: triglyceride biosynthetic process	8.47E-03
115	GO:0090333: regulation of stomatal closure	8.47E-03
116	GO:0018298: protein-chromophore linkage	8.79E-03
117	GO:0009813: flavonoid biosynthetic process	9.24E-03
118	GO:0051453: regulation of intracellular pH	9.53E-03
119	GO:0006779: porphyrin-containing compound biosynthetic process	9.53E-03
120	GO:0048527: lateral root development	1.02E-02
121	GO:0006949: syncytium formation	1.06E-02
122	GO:0006782: protoporphyrinogen IX biosynthetic process	1.06E-02
123	GO:0034599: cellular response to oxidative stress	1.17E-02
124	GO:0006879: cellular iron ion homeostasis	1.18E-02
125	GO:0009684: indoleacetic acid biosynthetic process	1.18E-02
126	GO:0009089: lysine biosynthetic process via diaminopimelate	1.18E-02
127	GO:0043085: positive regulation of catalytic activity	1.18E-02
128	GO:0006415: translational termination	1.18E-02
129	GO:0008361: regulation of cell size	1.30E-02
130	GO:0016024: CDP-diacylglycerol biosynthetic process	1.30E-02
131	GO:0010588: cotyledon vascular tissue pattern formation	1.42E-02
132	GO:0009926: auxin polar transport	1.44E-02
133	GO:0019253: reductive pentose-phosphate cycle	1.55E-02
134	GO:0010540: basipetal auxin transport	1.55E-02
135	GO:0010207: photosystem II assembly	1.55E-02
136	GO:0010020: chloroplast fission	1.55E-02
137	GO:0009409: response to cold	1.66E-02
138	GO:0006636: unsaturated fatty acid biosynthetic process	1.81E-02
139	GO:0005992: trehalose biosynthetic process	1.95E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	2.02E-02
141	GO:0005975: carbohydrate metabolic process	2.06E-02
142	GO:0006418: tRNA aminoacylation for protein translation	2.09E-02
143	GO:0007017: microtubule-based process	2.09E-02
144	GO:0019915: lipid storage	2.24E-02
145	GO:0061077: chaperone-mediated protein folding	2.24E-02
146	GO:0009269: response to desiccation	2.24E-02
147	GO:0016114: terpenoid biosynthetic process	2.24E-02
148	GO:0009735: response to cytokinin	2.30E-02
149	GO:0048367: shoot system development	2.38E-02
150	GO:0019748: secondary metabolic process	2.38E-02
151	GO:0030245: cellulose catabolic process	2.38E-02
152	GO:0016226: iron-sulfur cluster assembly	2.38E-02
153	GO:0030433: ubiquitin-dependent ERAD pathway	2.38E-02
154	GO:0080167: response to karrikin	2.46E-02
155	GO:0009686: gibberellin biosynthetic process	2.54E-02
156	GO:0048443: stamen development	2.69E-02
157	GO:0006979: response to oxidative stress	2.71E-02
158	GO:0016117: carotenoid biosynthetic process	2.85E-02
159	GO:0009742: brassinosteroid mediated signaling pathway	2.94E-02
160	GO:0080022: primary root development	3.01E-02
161	GO:0010087: phloem or xylem histogenesis	3.01E-02
162	GO:0010118: stomatal movement	3.01E-02
163	GO:0042335: cuticle development	3.01E-02
164	GO:0006662: glycerol ether metabolic process	3.18E-02
165	GO:0010182: sugar mediated signaling pathway	3.18E-02
166	GO:0009741: response to brassinosteroid	3.18E-02
167	GO:0010268: brassinosteroid homeostasis	3.18E-02
168	GO:0006885: regulation of pH	3.18E-02
169	GO:0006520: cellular amino acid metabolic process	3.18E-02
170	GO:0071472: cellular response to salt stress	3.18E-02
171	GO:0010154: fruit development	3.18E-02
172	GO:0006814: sodium ion transport	3.35E-02
173	GO:0009646: response to absence of light	3.35E-02
174	GO:0008654: phospholipid biosynthetic process	3.52E-02
175	GO:0009851: auxin biosynthetic process	3.52E-02
176	GO:0048825: cotyledon development	3.52E-02
177	GO:0009058: biosynthetic process	3.66E-02
178	GO:0016132: brassinosteroid biosynthetic process	3.69E-02
179	GO:0071554: cell wall organization or biogenesis	3.69E-02
180	GO:0032259: methylation	3.78E-02
181	GO:0016042: lipid catabolic process	3.85E-02
182	GO:0010090: trichome morphogenesis	4.05E-02
183	GO:1901657: glycosyl compound metabolic process	4.05E-02
184	GO:0009828: plant-type cell wall loosening	4.23E-02
185	GO:0009567: double fertilization forming a zygote and endosperm	4.23E-02
186	GO:0016125: sterol metabolic process	4.23E-02
187	GO:0009639: response to red or far red light	4.23E-02
188	GO:0006412: translation	4.43E-02
189	GO:0006413: translational initiation	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
7	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0019843: rRNA binding	2.72E-06
11	GO:0016851: magnesium chelatase activity	4.63E-05
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.19E-05
13	GO:0009011: starch synthase activity	8.19E-05
14	GO:0031409: pigment binding	1.43E-04
15	GO:0004332: fructose-bisphosphate aldolase activity	1.84E-04
16	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.49E-04
17	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.65E-04
18	GO:0005344: oxygen transporter activity	3.65E-04
19	GO:0051777: ent-kaurenoate oxidase activity	3.65E-04
20	GO:0004856: xylulokinase activity	3.65E-04
21	GO:0009374: biotin binding	3.65E-04
22	GO:0047746: chlorophyllase activity	7.94E-04
23	GO:0004618: phosphoglycerate kinase activity	7.94E-04
24	GO:0003839: gamma-glutamylcyclotransferase activity	7.94E-04
25	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.94E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.94E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	7.94E-04
28	GO:0004047: aminomethyltransferase activity	7.94E-04
29	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.94E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	7.94E-04
31	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.94E-04
32	GO:0016630: protochlorophyllide reductase activity	7.94E-04
33	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.94E-04
34	GO:0019156: isoamylase activity	7.94E-04
35	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.94E-04
36	GO:0004512: inositol-3-phosphate synthase activity	7.94E-04
37	GO:0016168: chlorophyll binding	9.63E-04
38	GO:0004751: ribose-5-phosphate isomerase activity	1.29E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.29E-03
40	GO:0070402: NADPH binding	1.29E-03
41	GO:0008864: formyltetrahydrofolate deformylase activity	1.29E-03
42	GO:0004373: glycogen (starch) synthase activity	1.29E-03
43	GO:0050734: hydroxycinnamoyltransferase activity	1.29E-03
44	GO:0090729: toxin activity	1.29E-03
45	GO:0002161: aminoacyl-tRNA editing activity	1.29E-03
46	GO:0003774: motor activity	1.37E-03
47	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.85E-03
48	GO:0001872: (1->3)-beta-D-glucan binding	1.85E-03
49	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.85E-03
50	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.85E-03
51	GO:0016149: translation release factor activity, codon specific	1.85E-03
52	GO:0003883: CTP synthase activity	1.85E-03
53	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.85E-03
54	GO:0005528: FK506 binding	1.89E-03
55	GO:0016491: oxidoreductase activity	1.89E-03
56	GO:0004185: serine-type carboxypeptidase activity	2.34E-03
57	GO:0008891: glycolate oxidase activity	2.49E-03
58	GO:0004045: aminoacyl-tRNA hydrolase activity	2.49E-03
59	GO:0045430: chalcone isomerase activity	2.49E-03
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-03
61	GO:0003727: single-stranded RNA binding	2.98E-03
62	GO:0003989: acetyl-CoA carboxylase activity	3.18E-03
63	GO:0016846: carbon-sulfur lyase activity	3.18E-03
64	GO:0003959: NADPH dehydrogenase activity	3.18E-03
65	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.18E-03
66	GO:0015081: sodium ion transmembrane transporter activity	3.93E-03
67	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.93E-03
68	GO:2001070: starch binding	3.93E-03
69	GO:0004556: alpha-amylase activity	3.93E-03
70	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.93E-03
71	GO:0004784: superoxide dismutase activity	3.93E-03
72	GO:0016788: hydrolase activity, acting on ester bonds	4.56E-03
73	GO:0048038: quinone binding	4.65E-03
74	GO:0016791: phosphatase activity	5.63E-03
75	GO:0005525: GTP binding	6.15E-03
76	GO:0004033: aldo-keto reductase (NADP) activity	6.51E-03
77	GO:0008135: translation factor activity, RNA binding	7.47E-03
78	GO:0003747: translation release factor activity	8.47E-03
79	GO:0016844: strictosidine synthase activity	9.53E-03
80	GO:0005381: iron ion transmembrane transporter activity	9.53E-03
81	GO:0008047: enzyme activator activity	1.06E-02
82	GO:0003924: GTPase activity	1.11E-02
83	GO:0003746: translation elongation factor activity	1.12E-02
84	GO:0015386: potassium:proton antiporter activity	1.18E-02
85	GO:0003723: RNA binding	1.22E-02
86	GO:0008378: galactosyltransferase activity	1.30E-02
87	GO:0000049: tRNA binding	1.30E-02
88	GO:0003735: structural constituent of ribosome	1.34E-02
89	GO:0003725: double-stranded RNA binding	1.42E-02
90	GO:0004565: beta-galactosidase activity	1.42E-02
91	GO:0010329: auxin efflux transmembrane transporter activity	1.42E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	1.42E-02
93	GO:0008266: poly(U) RNA binding	1.55E-02
94	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	1.56E-02
96	GO:0008168: methyltransferase activity	1.79E-02
97	GO:0051536: iron-sulfur cluster binding	1.95E-02
98	GO:0004857: enzyme inhibitor activity	1.95E-02
99	GO:0003690: double-stranded DNA binding	2.02E-02
100	GO:0005509: calcium ion binding	2.33E-02
101	GO:0030570: pectate lyase activity	2.54E-02
102	GO:0008810: cellulase activity	2.54E-02
103	GO:0052689: carboxylic ester hydrolase activity	2.79E-02
104	GO:0047134: protein-disulfide reductase activity	2.85E-02
105	GO:0004812: aminoacyl-tRNA ligase activity	2.85E-02
106	GO:0004791: thioredoxin-disulfide reductase activity	3.35E-02
107	GO:0010181: FMN binding	3.35E-02
108	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.93E-02
109	GO:0015385: sodium:proton antiporter activity	4.05E-02
110	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.05E-02
111	GO:0009055: electron carrier activity	4.35E-02
112	GO:0005200: structural constituent of cytoskeleton	4.42E-02
113	GO:0008483: transaminase activity	4.42E-02
114	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.42E-02
115	GO:0016413: O-acetyltransferase activity	4.61E-02
116	GO:0016597: amino acid binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	2.96E-45
4	GO:0009535: chloroplast thylakoid membrane	1.21E-23
5	GO:0009570: chloroplast stroma	7.03E-21
6	GO:0009579: thylakoid	8.72E-19
7	GO:0009941: chloroplast envelope	4.12E-16
8	GO:0009534: chloroplast thylakoid	4.48E-15
9	GO:0009543: chloroplast thylakoid lumen	7.34E-13
10	GO:0031977: thylakoid lumen	3.37E-09
11	GO:0009654: photosystem II oxygen evolving complex	4.41E-09
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.56E-09
13	GO:0019898: extrinsic component of membrane	1.88E-06
14	GO:0030095: chloroplast photosystem II	3.50E-06
15	GO:0010007: magnesium chelatase complex	2.10E-05
16	GO:0010287: plastoglobule	2.77E-05
17	GO:0030076: light-harvesting complex	1.22E-04
18	GO:0048046: apoplast	1.83E-04
19	GO:0005787: signal peptidase complex	3.65E-04
20	GO:0009547: plastid ribosome	3.65E-04
21	GO:0031361: integral component of thylakoid membrane	3.65E-04
22	GO:0009522: photosystem I	4.72E-04
23	GO:0010319: stromule	7.77E-04
24	GO:0043036: starch grain	7.94E-04
25	GO:0016459: myosin complex	8.18E-04
26	GO:0005840: ribosome	1.09E-03
27	GO:0009317: acetyl-CoA carboxylase complex	1.29E-03
28	GO:0033281: TAT protein transport complex	1.29E-03
29	GO:0042646: plastid nucleoid	1.85E-03
30	GO:0009517: PSII associated light-harvesting complex II	2.49E-03
31	GO:0009523: photosystem II	4.34E-03
32	GO:0005618: cell wall	4.35E-03
33	GO:0009295: nucleoid	5.99E-03
34	GO:0031969: chloroplast membrane	6.14E-03
35	GO:0009501: amyloplast	6.51E-03
36	GO:0009539: photosystem II reaction center	7.47E-03
37	GO:0005763: mitochondrial small ribosomal subunit	8.47E-03
38	GO:0042644: chloroplast nucleoid	8.47E-03
39	GO:0045298: tubulin complex	8.47E-03
40	GO:0000311: plastid large ribosomal subunit	1.30E-02
41	GO:0032040: small-subunit processome	1.30E-02
42	GO:0009536: plastid	1.37E-02
43	GO:0009508: plastid chromosome	1.42E-02
44	GO:0042651: thylakoid membrane	2.09E-02
45	GO:0015935: small ribosomal subunit	2.24E-02
46	GO:0030529: intracellular ribonucleoprotein complex	4.80E-02