Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
2GO:0006285: base-excision repair, AP site formation3.64E-05
3GO:0080173: male-female gamete recognition during double fertilization3.64E-05
4GO:1900033: negative regulation of trichome patterning9.09E-05
5GO:0071398: cellular response to fatty acid1.58E-04
6GO:0033591: response to L-ascorbic acid1.58E-04
7GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion1.58E-04
8GO:0010371: regulation of gibberellin biosynthetic process2.33E-04
9GO:1990019: protein storage vacuole organization2.33E-04
10GO:0009755: hormone-mediated signaling pathway3.14E-04
11GO:0048629: trichome patterning3.14E-04
12GO:0010438: cellular response to sulfur starvation4.01E-04
13GO:0031930: mitochondria-nucleus signaling pathway5.88E-04
14GO:0010439: regulation of glucosinolate biosynthetic process7.90E-04
15GO:2000070: regulation of response to water deprivation7.90E-04
16GO:0009819: drought recovery7.90E-04
17GO:0009051: pentose-phosphate shunt, oxidative branch1.01E-03
18GO:0010018: far-red light signaling pathway1.12E-03
19GO:0016441: posttranscriptional gene silencing1.24E-03
20GO:0009682: induced systemic resistance1.36E-03
21GO:0010105: negative regulation of ethylene-activated signaling pathway1.49E-03
22GO:0006006: glucose metabolic process1.62E-03
23GO:0009767: photosynthetic electron transport chain1.62E-03
24GO:0042753: positive regulation of circadian rhythm2.04E-03
25GO:0019762: glucosinolate catabolic process2.04E-03
26GO:0080147: root hair cell development2.18E-03
27GO:0005992: trehalose biosynthetic process2.18E-03
28GO:0010431: seed maturation2.48E-03
29GO:0009625: response to insect2.80E-03
30GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.80E-03
31GO:0009693: ethylene biosynthetic process2.80E-03
32GO:0006284: base-excision repair2.96E-03
33GO:0009639: response to red or far red light4.56E-03
34GO:0009567: double fertilization forming a zygote and endosperm4.56E-03
35GO:0010411: xyloglucan metabolic process5.76E-03
36GO:0009753: response to jasmonic acid6.10E-03
37GO:0009867: jasmonic acid mediated signaling pathway7.28E-03
38GO:0006357: regulation of transcription from RNA polymerase II promoter7.53E-03
39GO:0006631: fatty acid metabolic process8.21E-03
40GO:0042546: cell wall biogenesis8.93E-03
41GO:0009644: response to high light intensity9.17E-03
42GO:0008643: carbohydrate transport9.17E-03
43GO:0009585: red, far-red light phototransduction1.07E-02
44GO:0045893: positive regulation of transcription, DNA-templated1.16E-02
45GO:0009553: embryo sac development1.34E-02
46GO:0010150: leaf senescence2.02E-02
47GO:0071555: cell wall organization2.05E-02
48GO:0009739: response to gibberellin2.19E-02
49GO:0030154: cell differentiation2.24E-02
50GO:0009617: response to bacterium2.29E-02
51GO:0044550: secondary metabolite biosynthetic process3.42E-02
52GO:0009751: response to salicylic acid4.20E-02
53GO:0007165: signal transduction4.26E-02
RankGO TermAdjusted P value
1GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity3.64E-05
2GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity1.58E-04
3GO:0004345: glucose-6-phosphate dehydrogenase activity3.14E-04
4GO:0019104: DNA N-glycosylase activity3.14E-04
5GO:0052793: pectin acetylesterase activity3.14E-04
6GO:0003968: RNA-directed 5'-3' RNA polymerase activity4.92E-04
7GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.88E-04
8GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.01E-03
9GO:0004805: trehalose-phosphatase activity1.24E-03
10GO:0030234: enzyme regulator activity1.24E-03
11GO:0031418: L-ascorbic acid binding2.18E-03
12GO:0005345: purine nucleobase transmembrane transporter activity2.33E-03
13GO:0008514: organic anion transmembrane transporter activity2.96E-03
14GO:0016762: xyloglucan:xyloglucosyl transferase activity4.00E-03
15GO:0016759: cellulose synthase activity4.56E-03
16GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.62E-03
17GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding5.14E-03
18GO:0016798: hydrolase activity, acting on glycosyl bonds5.76E-03
19GO:0050661: NADP binding7.97E-03
20GO:0051539: 4 iron, 4 sulfur cluster binding7.97E-03
21GO:0005198: structural molecule activity9.42E-03
22GO:0031625: ubiquitin protein ligase binding1.15E-02
23GO:0016874: ligase activity1.32E-02
24GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.76E-02
25GO:0044212: transcription regulatory region DNA binding2.05E-02
26GO:0003677: DNA binding2.15E-02
27GO:0052689: carboxylic ester hydrolase activity3.46E-02
28GO:0004871: signal transducer activity3.78E-02
29GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.86E-02
30GO:0003700: transcription factor activity, sequence-specific DNA binding3.99E-02
RankGO TermAdjusted P value
1GO:0009544: chloroplast ATP synthase complex3.14E-04
2GO:0010494: cytoplasmic stress granule1.01E-03
3GO:0042644: chloroplast nucleoid1.01E-03
4GO:0009654: photosystem II oxygen evolving complex2.33E-03
5GO:0019898: extrinsic component of membrane3.82E-03
6GO:0000932: P-body5.15E-03
7GO:0000151: ubiquitin ligase complex6.18E-03
8GO:0005834: heterotrimeric G-protein complex1.26E-02
9GO:0012505: endomembrane system1.34E-02
10GO:0005794: Golgi apparatus4.66E-02
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Gene type



Gene DE type