co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0009733: response to auxin	2.26E-11
4	GO:0046620: regulation of organ growth	1.45E-06
5	GO:0009926: auxin polar transport	3.91E-05
6	GO:0009734: auxin-activated signaling pathway	9.84E-05
7	GO:0032958: inositol phosphate biosynthetic process	1.52E-04
8	GO:0051013: microtubule severing	1.52E-04
9	GO:0061062: regulation of nematode larval development	3.47E-04
10	GO:0001736: establishment of planar polarity	3.47E-04
11	GO:0090506: axillary shoot meristem initiation	5.68E-04
12	GO:1902448: positive regulation of shade avoidance	5.68E-04
13	GO:0006020: inositol metabolic process	8.13E-04
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.44E-04
15	GO:0042991: transcription factor import into nucleus	1.08E-03
16	GO:0048825: cotyledon development	1.25E-03
17	GO:0048497: maintenance of floral organ identity	1.36E-03
18	GO:0016554: cytidine to uridine editing	1.67E-03
19	GO:0009913: epidermal cell differentiation	1.67E-03
20	GO:0003006: developmental process involved in reproduction	1.67E-03
21	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.01E-03
22	GO:0040008: regulation of growth	2.03E-03
23	GO:0006351: transcription, DNA-templated	2.29E-03
24	GO:0015693: magnesium ion transport	2.36E-03
25	GO:0010497: plasmodesmata-mediated intercellular transport	3.12E-03
26	GO:0048507: meristem development	3.53E-03
27	GO:0000373: Group II intron splicing	3.53E-03
28	GO:0048589: developmental growth	3.53E-03
29	GO:1900865: chloroplast RNA modification	3.96E-03
30	GO:0005982: starch metabolic process	3.96E-03
31	GO:0009638: phototropism	3.96E-03
32	GO:0006779: porphyrin-containing compound biosynthetic process	3.96E-03
33	GO:0006782: protoporphyrinogen IX biosynthetic process	4.40E-03
34	GO:0048829: root cap development	4.40E-03
35	GO:0009641: shade avoidance	4.40E-03
36	GO:0016441: posttranscriptional gene silencing	4.40E-03
37	GO:0006949: syncytium formation	4.40E-03
38	GO:0008285: negative regulation of cell proliferation	4.86E-03
39	GO:0009750: response to fructose	4.86E-03
40	GO:0048765: root hair cell differentiation	4.86E-03
41	GO:0009664: plant-type cell wall organization	5.08E-03
42	GO:0005983: starch catabolic process	5.34E-03
43	GO:0010582: floral meristem determinacy	5.34E-03
44	GO:0010152: pollen maturation	5.34E-03
45	GO:0010588: cotyledon vascular tissue pattern formation	5.83E-03
46	GO:0010102: lateral root morphogenesis	5.83E-03
47	GO:0009785: blue light signaling pathway	5.83E-03
48	GO:0045892: negative regulation of transcription, DNA-templated	6.30E-03
49	GO:0010207: photosystem II assembly	6.33E-03
50	GO:0010223: secondary shoot formation	6.33E-03
51	GO:0048467: gynoecium development	6.33E-03
52	GO:0048367: shoot system development	6.65E-03
53	GO:0009825: multidimensional cell growth	6.86E-03
54	GO:0006863: purine nucleobase transport	7.40E-03
55	GO:0009624: response to nematode	7.76E-03
56	GO:0051017: actin filament bundle assembly	7.95E-03
57	GO:0043622: cortical microtubule organization	8.51E-03
58	GO:0006306: DNA methylation	9.10E-03
59	GO:0003333: amino acid transmembrane transport	9.10E-03
60	GO:0007275: multicellular organism development	9.57E-03
61	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.03E-02
62	GO:0010082: regulation of root meristem growth	1.03E-02
63	GO:0001944: vasculature development	1.03E-02
64	GO:0048443: stamen development	1.09E-02
65	GO:0006284: base-excision repair	1.09E-02
66	GO:0010091: trichome branching	1.09E-02
67	GO:0000226: microtubule cytoskeleton organization	1.22E-02
68	GO:0000271: polysaccharide biosynthetic process	1.22E-02
69	GO:0080022: primary root development	1.22E-02
70	GO:0010501: RNA secondary structure unwinding	1.22E-02
71	GO:0010087: phloem or xylem histogenesis	1.22E-02
72	GO:0045489: pectin biosynthetic process	1.29E-02
73	GO:0010305: leaf vascular tissue pattern formation	1.29E-02
74	GO:0009958: positive gravitropism	1.29E-02
75	GO:0010182: sugar mediated signaling pathway	1.29E-02
76	GO:0007018: microtubule-based movement	1.36E-02
77	GO:0009749: response to glucose	1.42E-02
78	GO:0071554: cell wall organization or biogenesis	1.50E-02
79	GO:0031047: gene silencing by RNA	1.57E-02
80	GO:0032502: developmental process	1.57E-02
81	GO:0010090: trichome morphogenesis	1.64E-02
82	GO:0009416: response to light stimulus	1.67E-02
83	GO:0009828: plant-type cell wall loosening	1.71E-02
84	GO:0009911: positive regulation of flower development	1.94E-02
85	GO:0015995: chlorophyll biosynthetic process	2.18E-02
86	GO:0010411: xyloglucan metabolic process	2.18E-02
87	GO:0048573: photoperiodism, flowering	2.18E-02
88	GO:0009817: defense response to fungus, incompatible interaction	2.34E-02
89	GO:0010311: lateral root formation	2.43E-02
90	GO:0009832: plant-type cell wall biogenesis	2.43E-02
91	GO:0048366: leaf development	2.46E-02
92	GO:0006865: amino acid transport	2.69E-02
93	GO:0016051: carbohydrate biosynthetic process	2.78E-02
94	GO:0009637: response to blue light	2.78E-02
95	GO:0006839: mitochondrial transport	3.05E-02
96	GO:0030001: metal ion transport	3.05E-02
97	GO:0006631: fatty acid metabolic process	3.14E-02
98	GO:0009744: response to sucrose	3.32E-02
99	GO:0007165: signal transduction	3.34E-02
100	GO:0042546: cell wall biogenesis	3.42E-02
101	GO:0006355: regulation of transcription, DNA-templated	3.58E-02
102	GO:0016042: lipid catabolic process	3.71E-02
103	GO:0006468: protein phosphorylation	3.91E-02
104	GO:0048364: root development	3.98E-02
105	GO:0071555: cell wall organization	4.03E-02
106	GO:0009736: cytokinin-activated signaling pathway	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0010011: auxin binding	1.84E-05
2	GO:0000828: inositol hexakisphosphate kinase activity	1.52E-04
3	GO:0008568: microtubule-severing ATPase activity	1.52E-04
4	GO:0019203: carbohydrate phosphatase activity	1.52E-04
5	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.52E-04
6	GO:0000829: inositol heptakisphosphate kinase activity	1.52E-04
7	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.52E-04
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.52E-04
9	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.47E-04
10	GO:0001872: (1->3)-beta-D-glucan binding	8.13E-04
11	GO:0010328: auxin influx transmembrane transporter activity	1.08E-03
12	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.08E-03
13	GO:0004871: signal transducer activity	1.26E-03
14	GO:0008725: DNA-3-methyladenine glycosylase activity	1.36E-03
15	GO:0004709: MAP kinase kinase kinase activity	1.67E-03
16	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.01E-03
17	GO:0030247: polysaccharide binding	2.26E-03
18	GO:0003724: RNA helicase activity	3.12E-03
19	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.53E-03
20	GO:0046983: protein dimerization activity	4.87E-03
21	GO:0004672: protein kinase activity	5.76E-03
22	GO:0003725: double-stranded RNA binding	5.83E-03
23	GO:0015095: magnesium ion transmembrane transporter activity	5.83E-03
24	GO:0003712: transcription cofactor activity	6.86E-03
25	GO:0005345: purine nucleobase transmembrane transporter activity	8.51E-03
26	GO:0009055: electron carrier activity	8.81E-03
27	GO:0033612: receptor serine/threonine kinase binding	9.10E-03
28	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.69E-03
29	GO:0016853: isomerase activity	1.36E-02
30	GO:0008017: microtubule binding	1.41E-02
31	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.50E-02
32	GO:0004518: nuclease activity	1.57E-02
33	GO:0051015: actin filament binding	1.64E-02
34	GO:0043565: sequence-specific DNA binding	1.82E-02
35	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.84E-02
36	GO:0016413: O-acetyltransferase activity	1.86E-02
37	GO:0004721: phosphoprotein phosphatase activity	2.18E-02
38	GO:0004004: ATP-dependent RNA helicase activity	2.18E-02
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.18E-02
40	GO:0005096: GTPase activator activity	2.43E-02
41	GO:0003697: single-stranded DNA binding	2.78E-02
42	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
43	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.95E-02
44	GO:0043621: protein self-association	3.52E-02
45	GO:0015293: symporter activity	3.61E-02
46	GO:0003723: RNA binding	3.98E-02
47	GO:0016298: lipase activity	4.21E-02
48	GO:0003777: microtubule motor activity	4.42E-02
49	GO:0015171: amino acid transmembrane transporter activity	4.42E-02
50	GO:0004674: protein serine/threonine kinase activity	4.50E-02
51	GO:0005515: protein binding	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009531: secondary cell wall	8.13E-04
3	GO:0009986: cell surface	2.36E-03
4	GO:0046658: anchored component of plasma membrane	3.07E-03
5	GO:0010494: cytoplasmic stress granule	3.53E-03
6	GO:0009508: plastid chromosome	5.83E-03
7	GO:0030095: chloroplast photosystem II	6.33E-03
8	GO:0009654: photosystem II oxygen evolving complex	8.51E-03
9	GO:0015629: actin cytoskeleton	1.03E-02
10	GO:0005871: kinesin complex	1.16E-02
11	GO:0019898: extrinsic component of membrane	1.42E-02
12	GO:0005886: plasma membrane	1.68E-02
13	GO:0009295: nucleoid	1.79E-02
14	GO:0005874: microtubule	2.50E-02
15	GO:0009570: chloroplast stroma	2.89E-02
16	GO:0031225: anchored component of membrane	2.92E-02
17	GO:0031977: thylakoid lumen	3.14E-02
18	GO:0005856: cytoskeleton	3.61E-02
19	GO:0009941: chloroplast envelope	4.17E-02