co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G45970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0042793: transcription from plastid promoter	7.23E-05
7	GO:0030488: tRNA methylation	1.00E-04
8	GO:0070509: calcium ion import	2.04E-04
9	GO:0010442: guard cell morphogenesis	2.04E-04
10	GO:0010480: microsporocyte differentiation	2.04E-04
11	GO:0042759: long-chain fatty acid biosynthetic process	2.04E-04
12	GO:0015904: tetracycline transport	2.04E-04
13	GO:0009658: chloroplast organization	2.13E-04
14	GO:0019388: galactose catabolic process	4.57E-04
15	GO:0018026: peptidyl-lysine monomethylation	4.57E-04
16	GO:2000123: positive regulation of stomatal complex development	4.57E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.57E-04
18	GO:0052541: plant-type cell wall cellulose metabolic process	4.57E-04
19	GO:0010020: chloroplast fission	6.10E-04
20	GO:0070588: calcium ion transmembrane transport	6.82E-04
21	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	7.44E-04
22	GO:0006071: glycerol metabolic process	7.58E-04
23	GO:0009640: photomorphogenesis	8.10E-04
24	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.06E-03
25	GO:0009647: skotomorphogenesis	1.06E-03
26	GO:0046739: transport of virus in multicellular host	1.06E-03
27	GO:0009590: detection of gravity	1.06E-03
28	GO:0043572: plastid fission	1.06E-03
29	GO:0007231: osmosensory signaling pathway	1.06E-03
30	GO:0009102: biotin biosynthetic process	1.06E-03
31	GO:0033500: carbohydrate homeostasis	1.41E-03
32	GO:2000038: regulation of stomatal complex development	1.41E-03
33	GO:0006808: regulation of nitrogen utilization	1.41E-03
34	GO:0010375: stomatal complex patterning	1.80E-03
35	GO:0048497: maintenance of floral organ identity	1.80E-03
36	GO:0006508: proteolysis	1.82E-03
37	GO:0009742: brassinosteroid mediated signaling pathway	1.96E-03
38	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.01E-03
39	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.21E-03
40	GO:0009913: epidermal cell differentiation	2.21E-03
41	GO:1902456: regulation of stomatal opening	2.21E-03
42	GO:0033365: protein localization to organelle	2.21E-03
43	GO:0010405: arabinogalactan protein metabolic process	2.21E-03
44	GO:0042026: protein refolding	2.66E-03
45	GO:2000033: regulation of seed dormancy process	2.66E-03
46	GO:0006458: 'de novo' protein folding	2.66E-03
47	GO:0016042: lipid catabolic process	2.91E-03
48	GO:0048437: floral organ development	3.13E-03
49	GO:0010444: guard mother cell differentiation	3.13E-03
50	GO:0048528: post-embryonic root development	3.13E-03
51	GO:0015995: chlorophyll biosynthetic process	3.40E-03
52	GO:0040008: regulation of growth	3.44E-03
53	GO:0005978: glycogen biosynthetic process	3.63E-03
54	GO:0001522: pseudouridine synthesis	3.63E-03
55	GO:0000105: histidine biosynthetic process	3.63E-03
56	GO:0009231: riboflavin biosynthetic process	3.63E-03
57	GO:0009813: flavonoid biosynthetic process	3.95E-03
58	GO:0000160: phosphorelay signal transduction system	3.95E-03
59	GO:0010497: plasmodesmata-mediated intercellular transport	4.15E-03
60	GO:0032544: plastid translation	4.15E-03
61	GO:0010206: photosystem II repair	4.70E-03
62	GO:0009835: fruit ripening	4.70E-03
63	GO:0006631: fatty acid metabolic process	5.66E-03
64	GO:0010162: seed dormancy process	5.86E-03
65	GO:0009641: shade avoidance	5.86E-03
66	GO:0006816: calcium ion transport	6.48E-03
67	GO:0009073: aromatic amino acid family biosynthetic process	6.48E-03
68	GO:0048229: gametophyte development	6.48E-03
69	GO:0005983: starch catabolic process	7.12E-03
70	GO:0000266: mitochondrial fission	7.12E-03
71	GO:0010588: cotyledon vascular tissue pattern formation	7.78E-03
72	GO:2000012: regulation of auxin polar transport	7.78E-03
73	GO:0030048: actin filament-based movement	7.78E-03
74	GO:0006006: glucose metabolic process	7.78E-03
75	GO:0050826: response to freezing	7.78E-03
76	GO:0010075: regulation of meristem growth	7.78E-03
77	GO:0009736: cytokinin-activated signaling pathway	8.27E-03
78	GO:0009934: regulation of meristem structural organization	8.47E-03
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.72E-03
80	GO:0000162: tryptophan biosynthetic process	9.90E-03
81	GO:0010025: wax biosynthetic process	9.90E-03
82	GO:0048367: shoot system development	1.01E-02
83	GO:0009740: gibberellic acid mediated signaling pathway	1.11E-02
84	GO:0010026: trichome differentiation	1.14E-02
85	GO:0061077: chaperone-mediated protein folding	1.22E-02
86	GO:0048278: vesicle docking	1.22E-02
87	GO:0048511: rhythmic process	1.22E-02
88	GO:0006629: lipid metabolic process	1.37E-02
89	GO:0009693: ethylene biosynthetic process	1.38E-02
90	GO:0009058: biosynthetic process	1.56E-02
91	GO:0080022: primary root development	1.64E-02
92	GO:0000413: protein peptidyl-prolyl isomerization	1.64E-02
93	GO:0010087: phloem or xylem histogenesis	1.64E-02
94	GO:0010118: stomatal movement	1.64E-02
95	GO:0048653: anther development	1.64E-02
96	GO:0010305: leaf vascular tissue pattern formation	1.73E-02
97	GO:0010182: sugar mediated signaling pathway	1.73E-02
98	GO:0009741: response to brassinosteroid	1.73E-02
99	GO:0048544: recognition of pollen	1.82E-02
100	GO:0061025: membrane fusion	1.82E-02
101	GO:0042752: regulation of circadian rhythm	1.82E-02
102	GO:0048825: cotyledon development	1.92E-02
103	GO:0019252: starch biosynthetic process	1.92E-02
104	GO:0032502: developmental process	2.11E-02
105	GO:0071281: cellular response to iron ion	2.21E-02
106	GO:0007267: cell-cell signaling	2.41E-02
107	GO:0000910: cytokinesis	2.51E-02
108	GO:0009793: embryo development ending in seed dormancy	2.59E-02
109	GO:0010027: thylakoid membrane organization	2.61E-02
110	GO:0006906: vesicle fusion	2.83E-02
111	GO:0016311: dephosphorylation	3.05E-02
112	GO:0009817: defense response to fungus, incompatible interaction	3.16E-02
113	GO:0009409: response to cold	3.28E-02
114	GO:0045087: innate immune response	3.74E-02
115	GO:0005975: carbohydrate metabolic process	3.87E-02
116	GO:0006457: protein folding	3.89E-02
117	GO:0006839: mitochondrial transport	4.10E-02
118	GO:0030001: metal ion transport	4.10E-02
119	GO:0006887: exocytosis	4.22E-02
120	GO:0015979: photosynthesis	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0005504: fatty acid binding	7.24E-06
6	GO:0045430: chalcone isomerase activity	3.05E-05
7	GO:0004176: ATP-dependent peptidase activity	6.47E-05
8	GO:0050308: sugar-phosphatase activity	2.04E-04
9	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.04E-04
10	GO:0009374: biotin binding	2.04E-04
11	GO:0019203: carbohydrate phosphatase activity	2.04E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	2.04E-04
13	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.57E-04
14	GO:0008237: metallopeptidase activity	2.63E-04
15	GO:0008493: tetracycline transporter activity	4.57E-04
16	GO:0016630: protochlorophyllide reductase activity	4.57E-04
17	GO:0004614: phosphoglucomutase activity	4.57E-04
18	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.57E-04
19	GO:0005262: calcium channel activity	5.42E-04
20	GO:0017150: tRNA dihydrouridine synthase activity	7.44E-04
21	GO:0016851: magnesium chelatase activity	1.06E-03
22	GO:0043023: ribosomal large subunit binding	1.06E-03
23	GO:0046556: alpha-L-arabinofuranosidase activity	1.41E-03
24	GO:0016279: protein-lysine N-methyltransferase activity	1.41E-03
25	GO:0003989: acetyl-CoA carboxylase activity	1.80E-03
26	GO:2001070: starch binding	2.21E-03
27	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.21E-03
28	GO:0000156: phosphorelay response regulator activity	2.28E-03
29	GO:0009055: electron carrier activity	3.38E-03
30	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.63E-03
31	GO:0004222: metalloendopeptidase activity	4.15E-03
32	GO:0008173: RNA methyltransferase activity	4.15E-03
33	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.70E-03
34	GO:0016887: ATPase activity	5.92E-03
35	GO:0044183: protein binding involved in protein folding	6.48E-03
36	GO:0015266: protein channel activity	7.78E-03
37	GO:0009982: pseudouridine synthase activity	7.78E-03
38	GO:0008266: poly(U) RNA binding	8.47E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.47E-03
40	GO:0003774: motor activity	8.47E-03
41	GO:0016298: lipase activity	8.56E-03
42	GO:0052689: carboxylic ester hydrolase activity	9.48E-03
43	GO:0046983: protein dimerization activity	1.01E-02
44	GO:0051536: iron-sulfur cluster binding	1.06E-02
45	GO:0004650: polygalacturonase activity	1.08E-02
46	GO:0043424: protein histidine kinase binding	1.14E-02
47	GO:0033612: receptor serine/threonine kinase binding	1.22E-02
48	GO:0005507: copper ion binding	1.24E-02
49	GO:0001085: RNA polymerase II transcription factor binding	1.73E-02
50	GO:0019901: protein kinase binding	1.92E-02
51	GO:0004518: nuclease activity	2.11E-02
52	GO:0005200: structural constituent of cytoskeleton	2.41E-02
53	GO:0016597: amino acid binding	2.51E-02
54	GO:0042802: identical protein binding	2.60E-02
55	GO:0008236: serine-type peptidase activity	3.05E-02
56	GO:0000287: magnesium ion binding	3.11E-02
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.16E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	3.23E-02
59	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.50E-02
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.74E-02
61	GO:0003993: acid phosphatase activity	3.86E-02
62	GO:0000149: SNARE binding	3.98E-02
63	GO:0030246: carbohydrate binding	4.07E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	4.10E-02
65	GO:0005484: SNAP receptor activity	4.47E-02
66	GO:0004185: serine-type carboxypeptidase activity	4.47E-02
67	GO:0035091: phosphatidylinositol binding	4.73E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	4.73E-02
69	GO:0005198: structural molecule activity	4.86E-02
70	GO:0004871: signal transducer activity	4.90E-02
71	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.71E-07
2	GO:0009941: chloroplast envelope	1.22E-05
3	GO:0009534: chloroplast thylakoid	2.05E-05
4	GO:0046658: anchored component of plasma membrane	1.56E-04
5	GO:0009570: chloroplast stroma	2.01E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.57E-04
7	GO:0009508: plastid chromosome	5.42E-04
8	GO:0010007: magnesium chelatase complex	7.44E-04
9	GO:0009317: acetyl-CoA carboxylase complex	7.44E-04
10	GO:0031225: anchored component of membrane	1.02E-03
11	GO:0009536: plastid	2.56E-03
12	GO:0009295: nucleoid	2.58E-03
13	GO:0010319: stromule	2.58E-03
14	GO:0009533: chloroplast stromal thylakoid	3.13E-03
15	GO:0031977: thylakoid lumen	5.66E-03
16	GO:0016459: myosin complex	5.86E-03
17	GO:0090404: pollen tube tip	6.48E-03
18	GO:0005578: proteinaceous extracellular matrix	7.78E-03
19	GO:0009579: thylakoid	9.53E-03
20	GO:0042651: thylakoid membrane	1.14E-02
21	GO:0009532: plastid stroma	1.22E-02
22	GO:0015629: actin cytoskeleton	1.38E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.47E-02
24	GO:0009543: chloroplast thylakoid lumen	1.48E-02
25	GO:0030529: intracellular ribonucleoprotein complex	2.61E-02
26	GO:0005667: transcription factor complex	2.83E-02
27	GO:0031201: SNARE complex	4.22E-02
28	GO:0090406: pollen tube	4.47E-02