Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G45270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:1903224: regulation of endodermal cell differentiation0.00E+00
3GO:0080127: fruit septum development0.00E+00
4GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0045184: establishment of protein localization0.00E+00
7GO:0006907: pinocytosis0.00E+00
8GO:0040008: regulation of growth2.32E-05
9GO:0046620: regulation of organ growth6.75E-05
10GO:0009734: auxin-activated signaling pathway1.09E-04
11GO:0009926: auxin polar transport3.39E-04
12GO:0009733: response to auxin3.52E-04
13GO:0016123: xanthophyll biosynthetic process3.78E-04
14GO:0048497: maintenance of floral organ identity3.78E-04
15GO:0016554: cytidine to uridine editing5.26E-04
16GO:0015904: tetracycline transport7.25E-04
17GO:0034757: negative regulation of iron ion transport7.25E-04
18GO:0042659: regulation of cell fate specification7.25E-04
19GO:0006438: valyl-tRNA aminoacylation7.25E-04
20GO:0090558: plant epidermis development7.25E-04
21GO:0043087: regulation of GTPase activity7.25E-04
22GO:0035987: endodermal cell differentiation7.25E-04
23GO:0043609: regulation of carbon utilization7.25E-04
24GO:0009451: RNA modification7.72E-04
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.36E-04
26GO:0000105: histidine biosynthetic process1.10E-03
27GO:2000123: positive regulation of stomatal complex development1.56E-03
28GO:0043039: tRNA aminoacylation1.56E-03
29GO:0048255: mRNA stabilization1.56E-03
30GO:0010271: regulation of chlorophyll catabolic process1.56E-03
31GO:0006432: phenylalanyl-tRNA aminoacylation1.56E-03
32GO:0001736: establishment of planar polarity1.56E-03
33GO:0080009: mRNA methylation1.56E-03
34GO:0009786: regulation of asymmetric cell division1.56E-03
35GO:0009958: positive gravitropism1.58E-03
36GO:0000373: Group II intron splicing1.61E-03
37GO:0009658: chloroplast organization1.76E-03
38GO:0009098: leucine biosynthetic process1.91E-03
39GO:1900865: chloroplast RNA modification1.91E-03
40GO:0048829: root cap development2.24E-03
41GO:0010583: response to cyclopentenone2.25E-03
42GO:0030029: actin filament-based process2.58E-03
43GO:0045910: negative regulation of DNA recombination2.58E-03
44GO:0033591: response to L-ascorbic acid2.58E-03
45GO:0090708: specification of plant organ axis polarity2.58E-03
46GO:0080117: secondary growth2.58E-03
47GO:0006000: fructose metabolic process2.58E-03
48GO:0071398: cellular response to fatty acid2.58E-03
49GO:2001295: malonyl-CoA biosynthetic process2.58E-03
50GO:0010582: floral meristem determinacy2.97E-03
51GO:0009725: response to hormone3.38E-03
52GO:0009793: embryo development ending in seed dormancy3.46E-03
53GO:0010371: regulation of gibberellin biosynthetic process3.76E-03
54GO:0051513: regulation of monopolar cell growth3.76E-03
55GO:0009102: biotin biosynthetic process3.76E-03
56GO:0051639: actin filament network formation3.76E-03
57GO:0034059: response to anoxia3.76E-03
58GO:0010239: chloroplast mRNA processing3.76E-03
59GO:0009800: cinnamic acid biosynthetic process3.76E-03
60GO:0044211: CTP salvage3.76E-03
61GO:0007276: gamete generation3.76E-03
62GO:0019048: modulation by virus of host morphology or physiology3.76E-03
63GO:0006424: glutamyl-tRNA aminoacylation3.76E-03
64GO:2000904: regulation of starch metabolic process3.76E-03
65GO:0031048: chromatin silencing by small RNA3.76E-03
66GO:1990019: protein storage vacuole organization3.76E-03
67GO:0010020: chloroplast fission3.82E-03
68GO:0000160: phosphorelay signal transduction system5.00E-03
69GO:0010311: lateral root formation5.00E-03
70GO:0051764: actin crosslink formation5.08E-03
71GO:0042274: ribosomal small subunit biogenesis5.08E-03
72GO:0009765: photosynthesis, light harvesting5.08E-03
73GO:0030104: water homeostasis5.08E-03
74GO:2000038: regulation of stomatal complex development5.08E-03
75GO:0006021: inositol biosynthetic process5.08E-03
76GO:0051567: histone H3-K9 methylation5.08E-03
77GO:0008295: spermidine biosynthetic process5.08E-03
78GO:0044206: UMP salvage5.08E-03
79GO:0009956: radial pattern formation5.08E-03
80GO:0009755: hormone-mediated signaling pathway5.08E-03
81GO:0051017: actin filament bundle assembly5.32E-03
82GO:0005992: trehalose biosynthetic process5.32E-03
83GO:0006865: amino acid transport6.00E-03
84GO:0009416: response to light stimulus6.42E-03
85GO:0010438: cellular response to sulfur starvation6.54E-03
86GO:0010158: abaxial cell fate specification6.54E-03
87GO:0080110: sporopollenin biosynthetic process6.54E-03
88GO:0010375: stomatal complex patterning6.54E-03
89GO:0016131: brassinosteroid metabolic process6.54E-03
90GO:0009696: salicylic acid metabolic process6.54E-03
91GO:0016120: carotene biosynthetic process6.54E-03
92GO:0045487: gibberellin catabolic process6.54E-03
93GO:0009686: gibberellin biosynthetic process7.75E-03
94GO:0009913: epidermal cell differentiation8.12E-03
95GO:1902456: regulation of stomatal opening8.12E-03
96GO:0048831: regulation of shoot system development8.12E-03
97GO:0009920: cell plate formation involved in plant-type cell wall biogenesis8.12E-03
98GO:0003006: developmental process involved in reproduction8.12E-03
99GO:0006559: L-phenylalanine catabolic process8.12E-03
100GO:0006206: pyrimidine nucleobase metabolic process8.12E-03
101GO:0016458: gene silencing8.12E-03
102GO:0042127: regulation of cell proliferation8.44E-03
103GO:0009744: response to sucrose8.81E-03
104GO:0016117: carotenoid biosynthetic process9.16E-03
105GO:0009648: photoperiodism9.83E-03
106GO:2000067: regulation of root morphogenesis9.83E-03
107GO:0009082: branched-chain amino acid biosynthetic process9.83E-03
108GO:0048509: regulation of meristem development9.83E-03
109GO:0009099: valine biosynthetic process9.83E-03
110GO:0030488: tRNA methylation9.83E-03
111GO:0031930: mitochondria-nucleus signaling pathway9.83E-03
112GO:0010087: phloem or xylem histogenesis9.92E-03
113GO:0009741: response to brassinosteroid1.07E-02
114GO:0010305: leaf vascular tissue pattern formation1.07E-02
115GO:0007018: microtubule-based movement1.15E-02
116GO:0006955: immune response1.17E-02
117GO:1900056: negative regulation of leaf senescence1.17E-02
118GO:0030497: fatty acid elongation1.17E-02
119GO:0010098: suspensor development1.17E-02
120GO:0010050: vegetative phase change1.17E-02
121GO:0010444: guard mother cell differentiation1.17E-02
122GO:0000082: G1/S transition of mitotic cell cycle1.17E-02
123GO:0045892: negative regulation of transcription, DNA-templated1.29E-02
124GO:0009736: cytokinin-activated signaling pathway1.29E-02
125GO:0006402: mRNA catabolic process1.36E-02
126GO:0010439: regulation of glucosinolate biosynthetic process1.36E-02
127GO:0009850: auxin metabolic process1.36E-02
128GO:0009819: drought recovery1.36E-02
129GO:0009690: cytokinin metabolic process1.36E-02
130GO:2000070: regulation of response to water deprivation1.36E-02
131GO:0070413: trehalose metabolism in response to stress1.36E-02
132GO:0010492: maintenance of shoot apical meristem identity1.36E-02
133GO:0055075: potassium ion homeostasis1.36E-02
134GO:0032502: developmental process1.42E-02
135GO:0006002: fructose 6-phosphate metabolic process1.56E-02
136GO:0071482: cellular response to light stimulus1.56E-02
137GO:0009097: isoleucine biosynthetic process1.56E-02
138GO:0009657: plastid organization1.56E-02
139GO:0032544: plastid translation1.56E-02
140GO:0048316: seed development1.67E-02
141GO:0046916: cellular transition metal ion homeostasis1.78E-02
142GO:0048507: meristem development1.78E-02
143GO:0009056: catabolic process1.78E-02
144GO:0051607: defense response to virus1.82E-02
145GO:0006779: porphyrin-containing compound biosynthetic process2.00E-02
146GO:2000280: regulation of root development2.00E-02
147GO:0016571: histone methylation2.00E-02
148GO:0031425: chloroplast RNA processing2.00E-02
149GO:0016573: histone acetylation2.00E-02
150GO:0006298: mismatch repair2.24E-02
151GO:0010192: mucilage biosynthetic process2.24E-02
152GO:0031627: telomeric loop formation2.24E-02
153GO:0009299: mRNA transcription2.24E-02
154GO:0006535: cysteine biosynthetic process from serine2.24E-02
155GO:0006782: protoporphyrinogen IX biosynthetic process2.24E-02
156GO:0030422: production of siRNA involved in RNA interference2.24E-02
157GO:0009641: shade avoidance2.24E-02
158GO:0048573: photoperiodism, flowering2.27E-02
159GO:0009682: induced systemic resistance2.48E-02
160GO:0009750: response to fructose2.48E-02
161GO:0048765: root hair cell differentiation2.48E-02
162GO:0006790: sulfur compound metabolic process2.73E-02
163GO:0005983: starch catabolic process2.73E-02
164GO:0010105: negative regulation of ethylene-activated signaling pathway2.73E-02
165GO:0045037: protein import into chloroplast stroma2.73E-02
166GO:0009058: biosynthetic process2.87E-02
167GO:0010588: cotyledon vascular tissue pattern formation3.00E-02
168GO:0030048: actin filament-based movement3.00E-02
169GO:0010102: lateral root morphogenesis3.00E-02
170GO:2000028: regulation of photoperiodism, flowering3.00E-02
171GO:0009691: cytokinin biosynthetic process3.00E-02
172GO:0010540: basipetal auxin transport3.27E-02
173GO:0009266: response to temperature stimulus3.27E-02
174GO:0006302: double-strand break repair3.27E-02
175GO:0048467: gynoecium development3.27E-02
176GO:0009933: meristem structural organization3.27E-02
177GO:0009887: animal organ morphogenesis3.27E-02
178GO:0006468: protein phosphorylation3.40E-02
179GO:0009825: multidimensional cell growth3.54E-02
180GO:0090351: seedling development3.54E-02
181GO:0046854: phosphatidylinositol phosphorylation3.54E-02
182GO:0030001: metal ion transport3.64E-02
183GO:0006839: mitochondrial transport3.64E-02
184GO:0006631: fatty acid metabolic process3.80E-02
185GO:0006351: transcription, DNA-templated3.81E-02
186GO:0006833: water transport3.83E-02
187GO:0000162: tryptophan biosynthetic process3.83E-02
188GO:0006863: purine nucleobase transport3.83E-02
189GO:0009833: plant-type primary cell wall biogenesis3.83E-02
190GO:0019344: cysteine biosynthetic process4.12E-02
191GO:0006338: chromatin remodeling4.12E-02
192GO:0007010: cytoskeleton organization4.12E-02
193GO:0042546: cell wall biogenesis4.28E-02
194GO:0051302: regulation of cell division4.42E-02
195GO:0006418: tRNA aminoacylation for protein translation4.42E-02
196GO:0009636: response to toxic substance4.62E-02
197GO:0009965: leaf morphogenesis4.62E-02
198GO:0010431: seed maturation4.73E-02
199GO:0051321: meiotic cell cycle4.73E-02
200GO:0006306: DNA methylation4.73E-02
201GO:0003333: amino acid transmembrane transport4.73E-02
202GO:0016998: cell wall macromolecule catabolic process4.73E-02
203GO:0007166: cell surface receptor signaling pathway4.73E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
7GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004401: histidinol-phosphatase activity0.00E+00
10GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
11GO:0015267: channel activity0.00E+00
12GO:0004519: endonuclease activity4.28E-05
13GO:0001872: (1->3)-beta-D-glucan binding1.50E-04
14GO:0031418: L-ascorbic acid binding6.55E-04
15GO:0003723: RNA binding6.78E-04
16GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity7.25E-04
17GO:0005227: calcium activated cation channel activity7.25E-04
18GO:0042834: peptidoglycan binding7.25E-04
19GO:0004818: glutamate-tRNA ligase activity7.25E-04
20GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.25E-04
21GO:0008395: steroid hydroxylase activity7.25E-04
22GO:0004832: valine-tRNA ligase activity7.25E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.25E-04
24GO:0052381: tRNA dimethylallyltransferase activity7.25E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity7.25E-04
26GO:0045543: gibberellin 2-beta-dioxygenase activity1.56E-03
27GO:0043425: bHLH transcription factor binding1.56E-03
28GO:0010296: prenylcysteine methylesterase activity1.56E-03
29GO:0004047: aminomethyltransferase activity1.56E-03
30GO:0004766: spermidine synthase activity1.56E-03
31GO:0052832: inositol monophosphate 3-phosphatase activity1.56E-03
32GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.56E-03
33GO:0008805: carbon-monoxide oxygenase activity1.56E-03
34GO:0019156: isoamylase activity1.56E-03
35GO:0008934: inositol monophosphate 1-phosphatase activity1.56E-03
36GO:0008493: tetracycline transporter activity1.56E-03
37GO:0052833: inositol monophosphate 4-phosphatase activity1.56E-03
38GO:0004826: phenylalanine-tRNA ligase activity1.56E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.56E-03
40GO:0050736: O-malonyltransferase activity1.56E-03
41GO:0009884: cytokinin receptor activity1.56E-03
42GO:0050017: L-3-cyanoalanine synthase activity1.56E-03
43GO:0003852: 2-isopropylmalate synthase activity1.56E-03
44GO:0004805: trehalose-phosphatase activity2.24E-03
45GO:0051015: actin filament binding2.45E-03
46GO:0016707: gibberellin 3-beta-dioxygenase activity2.58E-03
47GO:0045548: phenylalanine ammonia-lyase activity2.58E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity2.58E-03
49GO:0005034: osmosensor activity2.58E-03
50GO:0000049: tRNA binding2.97E-03
51GO:0052655: L-valine transaminase activity3.76E-03
52GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity3.76E-03
53GO:0052656: L-isoleucine transaminase activity3.76E-03
54GO:0035197: siRNA binding3.76E-03
55GO:0052654: L-leucine transaminase activity3.76E-03
56GO:0080031: methyl salicylate esterase activity3.76E-03
57GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.31E-03
58GO:0003779: actin binding4.61E-03
59GO:0005096: GTPase activator activity5.00E-03
60GO:0004845: uracil phosphoribosyltransferase activity5.08E-03
61GO:0010011: auxin binding5.08E-03
62GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.08E-03
63GO:0010328: auxin influx transmembrane transporter activity5.08E-03
64GO:0004084: branched-chain-amino-acid transaminase activity5.08E-03
65GO:0019199: transmembrane receptor protein kinase activity5.08E-03
66GO:0008408: 3'-5' exonuclease activity6.47E-03
67GO:0003989: acetyl-CoA carboxylase activity6.54E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity6.54E-03
69GO:0005471: ATP:ADP antiporter activity6.54E-03
70GO:2001070: starch binding8.12E-03
71GO:0030983: mismatched DNA binding8.12E-03
72GO:0080030: methyl indole-3-acetate esterase activity8.12E-03
73GO:0004709: MAP kinase kinase kinase activity8.12E-03
74GO:0004556: alpha-amylase activity8.12E-03
75GO:0043621: protein self-association9.75E-03
76GO:0004124: cysteine synthase activity9.83E-03
77GO:0004849: uridine kinase activity9.83E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.83E-03
79GO:0016832: aldehyde-lyase activity9.83E-03
80GO:0004656: procollagen-proline 4-dioxygenase activity9.83E-03
81GO:0019900: kinase binding9.83E-03
82GO:0003690: double-stranded DNA binding1.35E-02
83GO:0003777: microtubule motor activity1.47E-02
84GO:0015171: amino acid transmembrane transporter activity1.47E-02
85GO:0000156: phosphorelay response regulator activity1.51E-02
86GO:0046914: transition metal ion binding1.56E-02
87GO:0016759: cellulose synthase activity1.61E-02
88GO:0016791: phosphatase activity1.61E-02
89GO:0005200: structural constituent of cytoskeleton1.71E-02
90GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.78E-02
91GO:0016788: hydrolase activity, acting on ester bonds2.22E-02
92GO:0004673: protein histidine kinase activity2.24E-02
93GO:0030247: polysaccharide binding2.27E-02
94GO:0003691: double-stranded telomeric DNA binding2.48E-02
95GO:0005089: Rho guanyl-nucleotide exchange factor activity2.48E-02
96GO:0004521: endoribonuclease activity2.73E-02
97GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.78E-02
98GO:0016301: kinase activity2.80E-02
99GO:0000155: phosphorelay sensor kinase activity3.00E-02
100GO:0004674: protein serine/threonine kinase activity3.17E-02
101GO:0003697: single-stranded DNA binding3.20E-02
102GO:0003774: motor activity3.27E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.27E-02
104GO:0008061: chitin binding3.54E-02
105GO:0003712: transcription cofactor activity3.54E-02
106GO:0008146: sulfotransferase activity3.54E-02
107GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.68E-02
108GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.83E-02
109GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.83E-02
110GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.83E-02
111GO:0051536: iron-sulfur cluster binding4.12E-02
112GO:0004857: enzyme inhibitor activity4.12E-02
113GO:0005528: FK506 binding4.12E-02
114GO:0008134: transcription factor binding4.12E-02
115GO:0008017: microtubule binding4.25E-02
116GO:0004722: protein serine/threonine phosphatase activity4.40E-02
117GO:0043424: protein histidine kinase binding4.42E-02
118GO:0005345: purine nucleobase transmembrane transporter activity4.42E-02
119GO:0035091: phosphatidylinositol binding4.45E-02
120GO:0004707: MAP kinase activity4.73E-02
121GO:0004176: ATP-dependent peptidase activity4.73E-02
122GO:0003964: RNA-directed DNA polymerase activity4.73E-02
RankGO TermAdjusted P value
1GO:0035452: extrinsic component of plastid membrane0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0005886: plasma membrane3.33E-04
4GO:0000791: euchromatin7.25E-04
5GO:0009986: cell surface8.89E-04
6GO:0009513: etioplast1.56E-03
7GO:0031357: integral component of chloroplast inner membrane1.56E-03
8GO:0009569: chloroplast starch grain1.56E-03
9GO:0030870: Mre11 complex1.56E-03
10GO:0009509: chromoplast2.58E-03
11GO:0030139: endocytic vesicle2.58E-03
12GO:0009317: acetyl-CoA carboxylase complex2.58E-03
13GO:0005884: actin filament2.59E-03
14GO:0009507: chloroplast3.03E-03
15GO:0032585: multivesicular body membrane3.76E-03
16GO:0032432: actin filament bundle3.76E-03
17GO:0005719: nuclear euchromatin3.76E-03
18GO:0009707: chloroplast outer membrane4.69E-03
19GO:0046658: anchored component of plasma membrane4.78E-03
20GO:0000795: synaptonemal complex6.54E-03
21GO:0015629: actin cytoskeleton7.75E-03
22GO:0005871: kinesin complex9.16E-03
23GO:0005856: cytoskeleton1.02E-02
24GO:0009501: amyloplast1.36E-02
25GO:0048226: Casparian strip1.36E-02
26GO:0000783: nuclear telomere cap complex1.56E-02
27GO:0009536: plastid1.87E-02
28GO:0030529: intracellular ribonucleoprotein complex1.93E-02
29GO:0015030: Cajal body2.00E-02
30GO:0009706: chloroplast inner membrane2.03E-02
31GO:0000418: DNA-directed RNA polymerase IV complex2.24E-02
32GO:0016459: myosin complex2.24E-02
33GO:0009941: chloroplast envelope2.79E-02
34GO:0005874: microtubule2.82E-02
35GO:0005578: proteinaceous extracellular matrix3.00E-02
36GO:0009574: preprophase band3.00E-02
37GO:0030095: chloroplast photosystem II3.27E-02
38GO:0005759: mitochondrial matrix3.58E-02
39GO:0005875: microtubule associated complex3.83E-02
40GO:0031225: anchored component of membrane4.09E-02
41GO:0009654: photosystem II oxygen evolving complex4.42E-02
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Gene type



Gene DE type