co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G44650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009069: serine family amino acid metabolic process	0.00E+00
2	GO:0070178: D-serine metabolic process	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0010027: thylakoid membrane organization	1.15E-05
5	GO:0006412: translation	1.55E-05
6	GO:0032544: plastid translation	1.76E-05
7	GO:0015979: photosynthesis	5.91E-05
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.00E-04
9	GO:0009735: response to cytokinin	2.19E-04
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.55E-04
11	GO:0019464: glycine decarboxylation via glycine cleavage system	3.43E-04
12	GO:0016120: carotene biosynthetic process	4.37E-04
13	GO:0009817: defense response to fungus, incompatible interaction	4.58E-04
14	GO:0010190: cytochrome b6f complex assembly	5.37E-04
15	GO:0006563: L-serine metabolic process	5.37E-04
16	GO:0006751: glutathione catabolic process	5.37E-04
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.37E-04
18	GO:0048564: photosystem I assembly	8.61E-04
19	GO:0071482: cellular response to light stimulus	9.77E-04
20	GO:0009773: photosynthetic electron transport in photosystem I	1.49E-03
21	GO:0006415: translational termination	1.49E-03
22	GO:0010207: photosystem II assembly	1.92E-03
23	GO:0009561: megagametogenesis	3.24E-03
24	GO:0000413: protein peptidyl-prolyl isomerization	3.61E-03
25	GO:0042254: ribosome biogenesis	3.64E-03
26	GO:0015995: chlorophyll biosynthetic process	6.31E-03
27	GO:0006810: transport	7.00E-03
28	GO:0009853: photorespiration	7.99E-03
29	GO:0030001: metal ion transport	8.75E-03
30	GO:0006486: protein glycosylation	1.18E-02
31	GO:0006633: fatty acid biosynthetic process	2.08E-02
32	GO:0040008: regulation of growth	2.15E-02
33	GO:0009658: chloroplast organization	3.04E-02
34	GO:0032259: methylation	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0030378: serine racemase activity	0.00E+00
5	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
6	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
7	GO:0019843: rRNA binding	1.60E-07
8	GO:0003735: structural constituent of ribosome	4.65E-07
9	GO:0031072: heat shock protein binding	5.43E-05
10	GO:0016630: protochlorophyllide reductase activity	1.00E-04
11	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.00E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	1.00E-04
13	GO:0004148: dihydrolipoyl dehydrogenase activity	1.73E-04
14	GO:0016149: translation release factor activity, codon specific	2.55E-04
15	GO:0008097: 5S rRNA binding	2.55E-04
16	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.55E-04
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.43E-04
18	GO:0003959: NADPH dehydrogenase activity	4.37E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.52E-04
20	GO:0004033: aldo-keto reductase (NADP) activity	8.61E-04
21	GO:0009055: electron carrier activity	9.47E-04
22	GO:0003747: translation release factor activity	1.10E-03
23	GO:0051082: unfolded protein binding	1.36E-03
24	GO:0008378: galactosyltransferase activity	1.63E-03
25	GO:0008266: poly(U) RNA binding	1.92E-03
26	GO:0005528: FK506 binding	2.39E-03
27	GO:0043424: protein histidine kinase binding	2.55E-03
28	GO:0005509: calcium ion binding	3.88E-03
29	GO:0048038: quinone binding	4.38E-03
30	GO:0004721: phosphoprotein phosphatase activity	6.31E-03
31	GO:0051537: 2 iron, 2 sulfur cluster binding	1.01E-02
32	GO:0003690: double-stranded DNA binding	1.20E-02
33	GO:0016758: transferase activity, transferring hexosyl groups	1.74E-02
34	GO:0030170: pyridoxal phosphate binding	1.91E-02
35	GO:0008168: methyltransferase activity	2.95E-02
36	GO:0016491: oxidoreductase activity	3.09E-02
37	GO:0003729: mRNA binding	3.49E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	2.05E-29
3	GO:0009579: thylakoid	1.27E-20
4	GO:0009570: chloroplast stroma	5.69E-20
5	GO:0009535: chloroplast thylakoid membrane	6.69E-18
6	GO:0031977: thylakoid lumen	1.31E-10
7	GO:0009941: chloroplast envelope	3.67E-10
8	GO:0009543: chloroplast thylakoid lumen	3.01E-09
9	GO:0009534: chloroplast thylakoid	4.05E-09
10	GO:0009654: photosystem II oxygen evolving complex	1.05E-08
11	GO:0005840: ribosome	3.83E-08
12	GO:0019898: extrinsic component of membrane	5.43E-06
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-05
14	GO:0009547: plastid ribosome	4.04E-05
15	GO:0005960: glycine cleavage complex	2.55E-04
16	GO:0009533: chloroplast stromal thylakoid	7.49E-04
17	GO:0009539: photosystem II reaction center	9.77E-04
18	GO:0000311: plastid large ribosomal subunit	1.63E-03
19	GO:0009508: plastid chromosome	1.77E-03
20	GO:0000312: plastid small ribosomal subunit	1.92E-03
21	GO:0030095: chloroplast photosystem II	1.92E-03
22	GO:0031969: chloroplast membrane	4.42E-03
23	GO:0009295: nucleoid	5.21E-03
24	GO:0015934: large ribosomal subunit	7.49E-03
25	GO:0009706: chloroplast inner membrane	1.51E-02
26	GO:0010287: plastoglobule	1.70E-02
27	GO:0022627: cytosolic small ribosomal subunit	2.72E-02
28	GO:0009536: plastid	2.88E-02