co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080149: sucrose induced translational repression	0.00E+00
2	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
3	GO:0018063: cytochrome c-heme linkage	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0071985: multivesicular body sorting pathway	0.00E+00
6	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
7	GO:0016192: vesicle-mediated transport	1.97E-05
8	GO:0006102: isocitrate metabolic process	1.15E-04
9	GO:1990641: response to iron ion starvation	1.58E-04
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.58E-04
11	GO:0010230: alternative respiration	1.58E-04
12	GO:0019478: D-amino acid catabolic process	1.58E-04
13	GO:0006680: glucosylceramide catabolic process	1.58E-04
14	GO:1900384: regulation of flavonol biosynthetic process	1.58E-04
15	GO:0042350: GDP-L-fucose biosynthetic process	1.58E-04
16	GO:0051607: defense response to virus	1.74E-04
17	GO:0006886: intracellular protein transport	2.42E-04
18	GO:0015031: protein transport	3.47E-04
19	GO:0006101: citrate metabolic process	3.60E-04
20	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.60E-04
21	GO:0051252: regulation of RNA metabolic process	3.60E-04
22	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.60E-04
23	GO:0009805: coumarin biosynthetic process	3.60E-04
24	GO:0006099: tricarboxylic acid cycle	3.95E-04
25	GO:0000162: tryptophan biosynthetic process	5.37E-04
26	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	5.89E-04
27	GO:0044375: regulation of peroxisome size	5.89E-04
28	GO:0072661: protein targeting to plasma membrane	5.89E-04
29	GO:0010272: response to silver ion	5.89E-04
30	GO:0009226: nucleotide-sugar biosynthetic process	8.43E-04
31	GO:0055070: copper ion homeostasis	8.43E-04
32	GO:0001676: long-chain fatty acid metabolic process	8.43E-04
33	GO:0070301: cellular response to hydrogen peroxide	8.43E-04
34	GO:1902584: positive regulation of response to water deprivation	1.12E-03
35	GO:0006621: protein retention in ER lumen	1.12E-03
36	GO:0033356: UDP-L-arabinose metabolic process	1.12E-03
37	GO:1901002: positive regulation of response to salt stress	1.12E-03
38	GO:0045927: positive regulation of growth	1.41E-03
39	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.41E-03
40	GO:0006097: glyoxylate cycle	1.41E-03
41	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.74E-03
42	GO:0006555: methionine metabolic process	1.74E-03
43	GO:0019509: L-methionine salvage from methylthioadenosine	2.09E-03
44	GO:0034389: lipid particle organization	2.09E-03
45	GO:0017148: negative regulation of translation	2.09E-03
46	GO:0009816: defense response to bacterium, incompatible interaction	2.14E-03
47	GO:0009627: systemic acquired resistance	2.26E-03
48	GO:0080186: developmental vegetative growth	2.45E-03
49	GO:0071669: plant-type cell wall organization or biogenesis	2.45E-03
50	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.84E-03
51	GO:0045010: actin nucleation	2.84E-03
52	GO:0016559: peroxisome fission	2.84E-03
53	GO:0030968: endoplasmic reticulum unfolded protein response	3.25E-03
54	GO:0017004: cytochrome complex assembly	3.25E-03
55	GO:0009699: phenylpropanoid biosynthetic process	3.25E-03
56	GO:0006002: fructose 6-phosphate metabolic process	3.25E-03
57	GO:0015996: chlorophyll catabolic process	3.25E-03
58	GO:0010112: regulation of systemic acquired resistance	3.67E-03
59	GO:0000902: cell morphogenesis	3.67E-03
60	GO:0015780: nucleotide-sugar transport	3.67E-03
61	GO:0006631: fatty acid metabolic process	3.95E-03
62	GO:0051707: response to other organism	4.29E-03
63	GO:0000209: protein polyubiquitination	4.46E-03
64	GO:0000103: sulfate assimilation	4.58E-03
65	GO:0006032: chitin catabolic process	4.58E-03
66	GO:0000272: polysaccharide catabolic process	5.05E-03
67	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	5.19E-03
68	GO:0010102: lateral root morphogenesis	6.06E-03
69	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.06E-03
70	GO:0055046: microgametogenesis	6.06E-03
71	GO:0007015: actin filament organization	6.59E-03
72	GO:0007031: peroxisome organization	7.13E-03
73	GO:0090351: seedling development	7.13E-03
74	GO:0007033: vacuole organization	7.13E-03
75	GO:0010053: root epidermal cell differentiation	7.13E-03
76	GO:0034976: response to endoplasmic reticulum stress	7.69E-03
77	GO:0006874: cellular calcium ion homeostasis	8.86E-03
78	GO:0019915: lipid storage	9.46E-03
79	GO:0009269: response to desiccation	9.46E-03
80	GO:0016998: cell wall macromolecule catabolic process	9.46E-03
81	GO:0030433: ubiquitin-dependent ERAD pathway	1.01E-02
82	GO:0019748: secondary metabolic process	1.01E-02
83	GO:0009561: megagametogenesis	1.14E-02
84	GO:0006662: glycerol ether metabolic process	1.34E-02
85	GO:0010150: leaf senescence	1.42E-02
86	GO:0006623: protein targeting to vacuole	1.48E-02
87	GO:0010193: response to ozone	1.56E-02
88	GO:0009617: response to bacterium	1.70E-02
89	GO:0009615: response to virus	2.02E-02
90	GO:0006906: vesicle fusion	2.19E-02
91	GO:0009817: defense response to fungus, incompatible interaction	2.44E-02
92	GO:0030244: cellulose biosynthetic process	2.44E-02
93	GO:0009832: plant-type cell wall biogenesis	2.53E-02
94	GO:0006499: N-terminal protein myristoylation	2.62E-02
95	GO:0010043: response to zinc ion	2.71E-02
96	GO:0034599: cellular response to oxidative stress	2.98E-02
97	GO:0006887: exocytosis	3.27E-02
98	GO:0045454: cell redox homeostasis	3.28E-02
99	GO:0009744: response to sucrose	3.46E-02
100	GO:0009636: response to toxic substance	3.76E-02
101	GO:0009751: response to salicylic acid	3.98E-02
102	GO:0006629: lipid metabolic process	4.03E-02
103	GO:0009809: lignin biosynthetic process	4.28E-02
104	GO:0006979: response to oxidative stress	4.36E-02
105	GO:0051603: proteolysis involved in cellular protein catabolic process	4.38E-02
106	GO:0006417: regulation of translation	4.60E-02
107	GO:0009909: regulation of flower development	4.60E-02
108	GO:0006096: glycolytic process	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0005046: KDEL sequence binding	0.00E+00
3	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
4	GO:0034338: short-chain carboxylesterase activity	0.00E+00
5	GO:0008320: protein transmembrane transporter activity	1.04E-06
6	GO:0102293: pheophytinase b activity	1.58E-04
7	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	1.58E-04
8	GO:0032266: phosphatidylinositol-3-phosphate binding	1.58E-04
9	GO:0004348: glucosylceramidase activity	1.58E-04
10	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.58E-04
11	GO:0050577: GDP-L-fucose synthase activity	1.58E-04
12	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.58E-04
13	GO:0052691: UDP-arabinopyranose mutase activity	3.60E-04
14	GO:0008428: ribonuclease inhibitor activity	3.60E-04
15	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.60E-04
16	GO:0047746: chlorophyllase activity	3.60E-04
17	GO:0010297: heteropolysaccharide binding	3.60E-04
18	GO:0003994: aconitate hydratase activity	3.60E-04
19	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.89E-04
20	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.43E-04
21	GO:0035529: NADH pyrophosphatase activity	8.43E-04
22	GO:0005460: UDP-glucose transmembrane transporter activity	8.43E-04
23	GO:0016656: monodehydroascorbate reductase (NADH) activity	8.43E-04
24	GO:0046923: ER retention sequence binding	1.12E-03
25	GO:0016866: intramolecular transferase activity	1.12E-03
26	GO:0004834: tryptophan synthase activity	1.12E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.41E-03
28	GO:0008948: oxaloacetate decarboxylase activity	1.41E-03
29	GO:0004623: phospholipase A2 activity	1.41E-03
30	GO:0047631: ADP-ribose diphosphatase activity	1.41E-03
31	GO:0000210: NAD+ diphosphatase activity	1.74E-03
32	GO:0102391: decanoate--CoA ligase activity	2.09E-03
33	GO:0004656: procollagen-proline 4-dioxygenase activity	2.09E-03
34	GO:0004806: triglyceride lipase activity	2.38E-03
35	GO:0003872: 6-phosphofructokinase activity	2.45E-03
36	GO:0004467: long-chain fatty acid-CoA ligase activity	2.45E-03
37	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.84E-03
38	GO:0052747: sinapyl alcohol dehydrogenase activity	2.84E-03
39	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.33E-03
40	GO:0030234: enzyme regulator activity	4.58E-03
41	GO:0004568: chitinase activity	4.58E-03
42	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.55E-03
43	GO:0031624: ubiquitin conjugating enzyme binding	6.59E-03
44	GO:0005217: intracellular ligand-gated ion channel activity	7.13E-03
45	GO:0008061: chitin binding	7.13E-03
46	GO:0003712: transcription cofactor activity	7.13E-03
47	GO:0004970: ionotropic glutamate receptor activity	7.13E-03
48	GO:0051536: iron-sulfur cluster binding	8.27E-03
49	GO:0031418: L-ascorbic acid binding	8.27E-03
50	GO:0043130: ubiquitin binding	8.27E-03
51	GO:0015035: protein disulfide oxidoreductase activity	8.46E-03
52	GO:0016760: cellulose synthase (UDP-forming) activity	1.07E-02
53	GO:0003756: protein disulfide isomerase activity	1.14E-02
54	GO:0047134: protein-disulfide reductase activity	1.20E-02
55	GO:0005102: receptor binding	1.20E-02
56	GO:0050662: coenzyme binding	1.41E-02
57	GO:0004791: thioredoxin-disulfide reductase activity	1.41E-02
58	GO:0016853: isomerase activity	1.41E-02
59	GO:0004872: receptor activity	1.48E-02
60	GO:0016887: ATPase activity	1.51E-02
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.71E-02
62	GO:0051213: dioxygenase activity	2.02E-02
63	GO:0061630: ubiquitin protein ligase activity	2.88E-02
64	GO:0003746: translation elongation factor activity	2.89E-02
65	GO:0000149: SNARE binding	3.08E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.08E-02
67	GO:0042393: histone binding	3.17E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	3.17E-02
69	GO:0004871: signal transducer activity	3.43E-02
70	GO:0005484: SNAP receptor activity	3.46E-02
71	GO:0005198: structural molecule activity	3.76E-02
72	GO:0051287: NAD binding	3.96E-02
73	GO:0031625: ubiquitin protein ligase binding	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	2.19E-05
2	GO:0005783: endoplasmic reticulum	6.10E-05
3	GO:0005801: cis-Golgi network	6.70E-05
4	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	8.96E-05
5	GO:0045252: oxoglutarate dehydrogenase complex	1.58E-04
6	GO:0000138: Golgi trans cisterna	1.58E-04
7	GO:0030134: ER to Golgi transport vesicle	3.60E-04
8	GO:0000814: ESCRT II complex	3.60E-04
9	GO:0030130: clathrin coat of trans-Golgi network vesicle	5.89E-04
10	GO:0030132: clathrin coat of coated pit	5.89E-04
11	GO:0005794: Golgi apparatus	6.36E-04
12	GO:0030658: transport vesicle membrane	8.43E-04
13	GO:0005945: 6-phosphofructokinase complex	1.41E-03
14	GO:0032580: Golgi cisterna membrane	1.71E-03
15	GO:0005885: Arp2/3 protein complex	2.09E-03
16	GO:0005779: integral component of peroxisomal membrane	3.25E-03
17	GO:0005811: lipid particle	3.25E-03
18	GO:0031901: early endosome membrane	3.67E-03
19	GO:0031902: late endosome membrane	3.95E-03
20	GO:0030665: clathrin-coated vesicle membrane	4.12E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	4.12E-03
22	GO:0017119: Golgi transport complex	4.58E-03
23	GO:0005829: cytosol	7.04E-03
24	GO:0030176: integral component of endoplasmic reticulum membrane	7.13E-03
25	GO:0005795: Golgi stack	7.13E-03
26	GO:0005769: early endosome	7.69E-03
27	GO:0005774: vacuolar membrane	9.59E-03
28	GO:0009506: plasmodesma	9.81E-03
29	GO:0005770: late endosome	1.34E-02
30	GO:0009504: cell plate	1.48E-02
31	GO:0019898: extrinsic component of membrane	1.48E-02
32	GO:0005778: peroxisomal membrane	1.86E-02
33	GO:0046658: anchored component of plasma membrane	1.89E-02
34	GO:0005788: endoplasmic reticulum lumen	2.10E-02
35	GO:0005886: plasma membrane	2.17E-02
36	GO:0000151: ubiquitin ligase complex	2.44E-02
37	GO:0031201: SNARE complex	3.27E-02
38	GO:0016021: integral component of membrane	3.38E-02
39	GO:0005743: mitochondrial inner membrane	3.75E-02
40	GO:0005768: endosome	3.79E-02
41	GO:0000502: proteasome complex	4.28E-02