co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0006223: uracil salvage	0.00E+00
3	GO:0042254: ribosome biogenesis	2.67E-08
4	GO:0015995: chlorophyll biosynthetic process	3.61E-08
5	GO:0006412: translation	1.67E-07
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.72E-07
7	GO:0006000: fructose metabolic process	1.42E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	1.70E-06
9	GO:0015979: photosynthesis	1.91E-06
10	GO:0009735: response to cytokinin	1.62E-05
11	GO:0006002: fructose 6-phosphate metabolic process	5.37E-05
12	GO:0032544: plastid translation	5.37E-05
13	GO:0006094: gluconeogenesis	1.54E-04
14	GO:0005986: sucrose biosynthetic process	1.54E-04
15	GO:0006729: tetrahydrobiopterin biosynthetic process	1.97E-04
16	GO:0010270: photosystem II oxygen evolving complex assembly	1.97E-04
17	GO:0006518: peptide metabolic process	3.29E-04
18	GO:0071484: cellular response to light intensity	4.75E-04
19	GO:0051085: chaperone mediated protein folding requiring cofactor	4.75E-04
20	GO:0045727: positive regulation of translation	6.32E-04
21	GO:0044206: UMP salvage	6.32E-04
22	GO:0006461: protein complex assembly	8.00E-04
23	GO:0043097: pyrimidine nucleoside salvage	8.00E-04
24	GO:0006828: manganese ion transport	9.77E-04
25	GO:0006206: pyrimidine nucleobase metabolic process	9.77E-04
26	GO:0010190: cytochrome b6f complex assembly	9.77E-04
27	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	9.77E-04
28	GO:0042026: protein refolding	1.16E-03
29	GO:0009772: photosynthetic electron transport in photosystem II	1.36E-03
30	GO:0009657: plastid organization	1.79E-03
31	GO:0010206: photosystem II repair	2.02E-03
32	GO:0006783: heme biosynthetic process	2.02E-03
33	GO:0006754: ATP biosynthetic process	2.02E-03
34	GO:0010205: photoinhibition	2.26E-03
35	GO:0006364: rRNA processing	2.40E-03
36	GO:0006782: protoporphyrinogen IX biosynthetic process	2.51E-03
37	GO:0006816: calcium ion transport	2.77E-03
38	GO:0009089: lysine biosynthetic process via diaminopimelate	2.77E-03
39	GO:0000272: polysaccharide catabolic process	2.77E-03
40	GO:0009750: response to fructose	2.77E-03
41	GO:0018119: peptidyl-cysteine S-nitrosylation	2.77E-03
42	GO:0005983: starch catabolic process	3.03E-03
43	GO:0019253: reductive pentose-phosphate cycle	3.59E-03
44	GO:0010207: photosystem II assembly	3.59E-03
45	GO:0005985: sucrose metabolic process	3.88E-03
46	GO:0071732: cellular response to nitric oxide	3.88E-03
47	GO:0006636: unsaturated fatty acid biosynthetic process	4.18E-03
48	GO:0009116: nucleoside metabolic process	4.48E-03
49	GO:0000027: ribosomal large subunit assembly	4.48E-03
50	GO:0051017: actin filament bundle assembly	4.48E-03
51	GO:0043622: cortical microtubule organization	4.80E-03
52	GO:0009768: photosynthesis, light harvesting in photosystem I	4.80E-03
53	GO:0009409: response to cold	4.99E-03
54	GO:0061077: chaperone-mediated protein folding	5.12E-03
55	GO:0006633: fatty acid biosynthetic process	5.32E-03
56	GO:0007005: mitochondrion organization	5.45E-03
57	GO:0035428: hexose transmembrane transport	5.45E-03
58	GO:0006012: galactose metabolic process	5.78E-03
59	GO:0071369: cellular response to ethylene stimulus	5.78E-03
60	GO:0070417: cellular response to cold	6.48E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	6.83E-03
62	GO:0042631: cellular response to water deprivation	6.83E-03
63	GO:0046323: glucose import	7.20E-03
64	GO:0015986: ATP synthesis coupled proton transport	7.57E-03
65	GO:0006457: protein folding	8.04E-03
66	GO:0055114: oxidation-reduction process	8.10E-03
67	GO:0000302: response to reactive oxygen species	8.33E-03
68	GO:0032502: developmental process	8.73E-03
69	GO:0071281: cellular response to iron ion	9.12E-03
70	GO:0009627: systemic acquired resistance	1.17E-02
71	GO:0016311: dephosphorylation	1.26E-02
72	GO:0008219: cell death	1.30E-02
73	GO:0007568: aging	1.44E-02
74	GO:0009631: cold acclimation	1.44E-02
75	GO:0032259: methylation	1.59E-02
76	GO:0034599: cellular response to oxidative stress	1.59E-02
77	GO:0006629: lipid metabolic process	1.66E-02
78	GO:0006810: transport	2.31E-02
79	GO:0006096: glycolytic process	2.56E-02
80	GO:0009416: response to light stimulus	2.95E-02
81	GO:0009611: response to wounding	3.02E-02
82	GO:0042744: hydrogen peroxide catabolic process	3.76E-02
83	GO:0009793: embryo development ending in seed dormancy	4.05E-02
84	GO:0016036: cellular response to phosphate starvation	4.11E-02
85	GO:0007623: circadian rhythm	4.32E-02
86	GO:0010468: regulation of gene expression	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0019843: rRNA binding	3.37E-11
7	GO:0003735: structural constituent of ribosome	8.54E-10
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.87E-07
9	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.72E-07
10	GO:0005528: FK506 binding	6.23E-06
11	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	8.25E-05
12	GO:0004853: uroporphyrinogen decarboxylase activity	8.25E-05
13	GO:0045485: omega-6 fatty acid desaturase activity	8.25E-05
14	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	8.25E-05
15	GO:0010297: heteropolysaccharide binding	1.97E-04
16	GO:0008967: phosphoglycolate phosphatase activity	1.97E-04
17	GO:0018708: thiol S-methyltransferase activity	1.97E-04
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.97E-04
19	GO:0070402: NADPH binding	3.29E-04
20	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.29E-04
21	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.29E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.29E-04
23	GO:0008097: 5S rRNA binding	4.75E-04
24	GO:0019201: nucleotide kinase activity	4.75E-04
25	GO:0016851: magnesium chelatase activity	4.75E-04
26	GO:0004845: uracil phosphoribosyltransferase activity	6.32E-04
27	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	6.32E-04
28	GO:0004709: MAP kinase kinase kinase activity	9.77E-04
29	GO:0004130: cytochrome-c peroxidase activity	9.77E-04
30	GO:0051920: peroxiredoxin activity	1.16E-03
31	GO:0004017: adenylate kinase activity	1.16E-03
32	GO:0004849: uridine kinase activity	1.16E-03
33	GO:0016209: antioxidant activity	1.57E-03
34	GO:0004034: aldose 1-epimerase activity	1.57E-03
35	GO:0004033: aldo-keto reductase (NADP) activity	1.57E-03
36	GO:0051537: 2 iron, 2 sulfur cluster binding	1.94E-03
37	GO:0047617: acyl-CoA hydrolase activity	2.26E-03
38	GO:0005384: manganese ion transmembrane transporter activity	2.26E-03
39	GO:0030234: enzyme regulator activity	2.51E-03
40	GO:0044183: protein binding involved in protein folding	2.77E-03
41	GO:0047372: acylglycerol lipase activity	2.77E-03
42	GO:0015095: magnesium ion transmembrane transporter activity	3.31E-03
43	GO:0031409: pigment binding	4.18E-03
44	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.20E-03
45	GO:0016853: isomerase activity	7.57E-03
46	GO:0005355: glucose transmembrane transporter activity	7.57E-03
47	GO:0050662: coenzyme binding	7.57E-03
48	GO:0008168: methyltransferase activity	8.71E-03
49	GO:0004601: peroxidase activity	9.05E-03
50	GO:0051015: actin filament binding	9.12E-03
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.94E-03
52	GO:0016168: chlorophyll binding	1.12E-02
53	GO:0004222: metalloendopeptidase activity	1.39E-02
54	GO:0016491: oxidoreductase activity	2.01E-02
55	GO:0051082: unfolded protein binding	2.93E-02
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.50E-02
57	GO:0015144: carbohydrate transmembrane transporter activity	3.90E-02
58	GO:0005351: sugar:proton symporter activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	1.19E-38
4	GO:0009941: chloroplast envelope	4.72E-34
5	GO:0009535: chloroplast thylakoid membrane	3.23E-32
6	GO:0009570: chloroplast stroma	4.89E-26
7	GO:0009579: thylakoid	1.65E-20
8	GO:0009534: chloroplast thylakoid	1.80E-20
9	GO:0009543: chloroplast thylakoid lumen	6.28E-13
10	GO:0005840: ribosome	2.21E-11
11	GO:0031977: thylakoid lumen	4.27E-11
12	GO:0010319: stromule	1.06E-06
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.66E-05
14	GO:0030095: chloroplast photosystem II	1.75E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.97E-04
16	GO:0031357: integral component of chloroplast inner membrane	1.97E-04
17	GO:0031969: chloroplast membrane	2.46E-04
18	GO:0010007: magnesium chelatase complex	3.29E-04
19	GO:0009706: chloroplast inner membrane	3.84E-04
20	GO:0009544: chloroplast ATP synthase complex	6.32E-04
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	9.77E-04
22	GO:0015934: large ribosomal subunit	1.28E-03
23	GO:0009533: chloroplast stromal thylakoid	1.36E-03
24	GO:0048046: apoplast	1.80E-03
25	GO:0030076: light-harvesting complex	3.88E-03
26	GO:0010287: plastoglobule	4.03E-03
27	GO:0042651: thylakoid membrane	4.80E-03
28	GO:0015935: small ribosomal subunit	5.12E-03
29	GO:0022626: cytosolic ribosome	5.48E-03
30	GO:0015629: actin cytoskeleton	5.78E-03
31	GO:0009523: photosystem II	7.95E-03
32	GO:0022625: cytosolic large ribosomal subunit	1.18E-02
33	GO:0009707: chloroplast outer membrane	1.30E-02
34	GO:0016020: membrane	1.41E-02
35	GO:0009536: plastid	1.84E-02
36	GO:0005856: cytoskeleton	2.00E-02