co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
2	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
3	GO:0032515: negative regulation of phosphoprotein phosphatase activity	0.00E+00
4	GO:0032491: detection of molecule of fungal origin	1.88E-04
5	GO:0046256: 2,4,6-trinitrotoluene catabolic process	1.88E-04
6	GO:0015969: guanosine tetraphosphate metabolic process	1.88E-04
7	GO:0042742: defense response to bacterium	3.55E-04
8	GO:0009727: detection of ethylene stimulus	4.24E-04
9	GO:0043066: negative regulation of apoptotic process	4.24E-04
10	GO:0015865: purine nucleotide transport	4.24E-04
11	GO:0019725: cellular homeostasis	4.24E-04
12	GO:0080183: response to photooxidative stress	4.24E-04
13	GO:0010155: regulation of proton transport	4.24E-04
14	GO:0002240: response to molecule of oomycetes origin	4.24E-04
15	GO:2000028: regulation of photoperiodism, flowering	4.86E-04
16	GO:0009266: response to temperature stimulus	5.47E-04
17	GO:0034051: negative regulation of plant-type hypersensitive response	6.92E-04
18	GO:0009863: salicylic acid mediated signaling pathway	7.52E-04
19	GO:0010731: protein glutathionylation	9.86E-04
20	GO:0046902: regulation of mitochondrial membrane permeability	9.86E-04
21	GO:0072583: clathrin-dependent endocytosis	9.86E-04
22	GO:0031348: negative regulation of defense response	9.89E-04
23	GO:0060548: negative regulation of cell death	1.31E-03
24	GO:0045227: capsule polysaccharide biosynthetic process	1.31E-03
25	GO:0033358: UDP-L-arabinose biosynthetic process	1.31E-03
26	GO:0010200: response to chitin	1.49E-03
27	GO:0030041: actin filament polymerization	1.66E-03
28	GO:0018344: protein geranylgeranylation	1.66E-03
29	GO:0009247: glycolipid biosynthetic process	1.66E-03
30	GO:0010337: regulation of salicylic acid metabolic process	2.05E-03
31	GO:0002238: response to molecule of fungal origin	2.05E-03
32	GO:0048317: seed morphogenesis	2.05E-03
33	GO:0006952: defense response	2.06E-03
34	GO:0006904: vesicle docking involved in exocytosis	2.30E-03
35	GO:0045926: negative regulation of growth	2.46E-03
36	GO:0080036: regulation of cytokinin-activated signaling pathway	2.46E-03
37	GO:0071470: cellular response to osmotic stress	2.46E-03
38	GO:0031930: mitochondria-nucleus signaling pathway	2.46E-03
39	GO:0009751: response to salicylic acid	2.50E-03
40	GO:1900057: positive regulation of leaf senescence	2.90E-03
41	GO:0019375: galactolipid biosynthetic process	3.36E-03
42	GO:0045010: actin nucleation	3.36E-03
43	GO:0031540: regulation of anthocyanin biosynthetic process	3.36E-03
44	GO:0010928: regulation of auxin mediated signaling pathway	3.36E-03
45	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.36E-03
46	GO:0010204: defense response signaling pathway, resistance gene-independent	3.84E-03
47	GO:0010208: pollen wall assembly	3.84E-03
48	GO:0009867: jasmonic acid mediated signaling pathway	4.26E-03
49	GO:0010112: regulation of systemic acquired resistance	4.35E-03
50	GO:1900426: positive regulation of defense response to bacterium	4.87E-03
51	GO:0048268: clathrin coat assembly	4.87E-03
52	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.87E-03
53	GO:0006897: endocytosis	5.05E-03
54	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.42E-03
55	GO:0006032: chitin catabolic process	5.42E-03
56	GO:0019684: photosynthesis, light reaction	5.99E-03
57	GO:0009089: lysine biosynthetic process via diaminopimelate	5.99E-03
58	GO:0009737: response to abscisic acid	6.06E-03
59	GO:0006812: cation transport	6.88E-03
60	GO:0018107: peptidyl-threonine phosphorylation	7.19E-03
61	GO:0006829: zinc II ion transport	7.19E-03
62	GO:0002237: response to molecule of bacterial origin	7.82E-03
63	GO:0046777: protein autophosphorylation	7.87E-03
64	GO:0016310: phosphorylation	7.98E-03
65	GO:0046688: response to copper ion	8.47E-03
66	GO:0046854: phosphatidylinositol phosphorylation	8.47E-03
67	GO:0009225: nucleotide-sugar metabolic process	8.47E-03
68	GO:0010167: response to nitrate	8.47E-03
69	GO:0055085: transmembrane transport	8.77E-03
70	GO:0009620: response to fungus	9.60E-03
71	GO:0080147: root hair cell development	9.83E-03
72	GO:0006825: copper ion transport	1.05E-02
73	GO:0018105: peptidyl-serine phosphorylation	1.08E-02
74	GO:0016998: cell wall macromolecule catabolic process	1.13E-02
75	GO:0071456: cellular response to hypoxia	1.20E-02
76	GO:0010017: red or far-red light signaling pathway	1.20E-02
77	GO:0071369: cellular response to ethylene stimulus	1.28E-02
78	GO:0006012: galactose metabolic process	1.28E-02
79	GO:0009306: protein secretion	1.35E-02
80	GO:0006885: regulation of pH	1.60E-02
81	GO:0009960: endosperm development	1.60E-02
82	GO:0009749: response to glucose	1.77E-02
83	GO:0007165: signal transduction	1.79E-02
84	GO:0009739: response to gibberellin	2.04E-02
85	GO:0006470: protein dephosphorylation	2.09E-02
86	GO:0009738: abscisic acid-activated signaling pathway	2.35E-02
87	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.51E-02
88	GO:0010029: regulation of seed germination	2.51E-02
89	GO:0035556: intracellular signal transduction	2.62E-02
90	GO:0000160: phosphorelay signal transduction system	3.02E-02
91	GO:0006499: N-terminal protein myristoylation	3.12E-02
92	GO:0009407: toxin catabolic process	3.12E-02
93	GO:0010119: regulation of stomatal movement	3.23E-02
94	GO:0010043: response to zinc ion	3.23E-02
95	GO:0007568: aging	3.23E-02
96	GO:0016192: vesicle-mediated transport	3.68E-02
97	GO:0006887: exocytosis	3.89E-02
98	GO:0051707: response to other organism	4.13E-02
99	GO:0045454: cell redox homeostasis	4.18E-02
100	GO:0009636: response to toxic substance	4.48E-02
101	GO:0006855: drug transmembrane transport	4.60E-02
102	GO:0042538: hyperosmotic salinity response	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0004865: protein serine/threonine phosphatase inhibitor activity	0.00E+00
4	GO:0005212: structural constituent of eye lens	0.00E+00
5	GO:0046481: digalactosyldiacylglycerol synthase activity	1.88E-04
6	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.88E-04
7	GO:0032050: clathrin heavy chain binding	1.88E-04
8	GO:0004662: CAAX-protein geranylgeranyltransferase activity	1.88E-04
9	GO:0008559: xenobiotic-transporting ATPase activity	3.73E-04
10	GO:0015036: disulfide oxidoreductase activity	4.24E-04
11	GO:0008728: GTP diphosphokinase activity	4.24E-04
12	GO:0048531: beta-1,3-galactosyltransferase activity	4.24E-04
13	GO:0016531: copper chaperone activity	6.92E-04
14	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.63E-04
15	GO:0035250: UDP-galactosyltransferase activity	9.86E-04
16	GO:0005509: calcium ion binding	1.16E-03
17	GO:0016301: kinase activity	1.19E-03
18	GO:0050373: UDP-arabinose 4-epimerase activity	1.31E-03
19	GO:0005471: ATP:ADP antiporter activity	1.66E-03
20	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.66E-03
21	GO:0004656: procollagen-proline 4-dioxygenase activity	2.46E-03
22	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.46E-03
23	GO:0009927: histidine phosphotransfer kinase activity	2.46E-03
24	GO:0003978: UDP-glucose 4-epimerase activity	2.46E-03
25	GO:0043295: glutathione binding	2.90E-03
26	GO:0004430: 1-phosphatidylinositol 4-kinase activity	3.84E-03
27	GO:0004568: chitinase activity	5.42E-03
28	GO:0005545: 1-phosphatidylinositol binding	5.42E-03
29	GO:0004713: protein tyrosine kinase activity	5.42E-03
30	GO:0005543: phospholipid binding	5.99E-03
31	GO:0043531: ADP binding	6.18E-03
32	GO:0031072: heat shock protein binding	7.19E-03
33	GO:0005524: ATP binding	8.56E-03
34	GO:0004842: ubiquitin-protein transferase activity	8.82E-03
35	GO:0031418: L-ascorbic acid binding	9.83E-03
36	GO:0016874: ligase activity	9.91E-03
37	GO:0008324: cation transmembrane transporter activity	1.05E-02
38	GO:0051087: chaperone binding	1.05E-02
39	GO:0043424: protein histidine kinase binding	1.05E-02
40	GO:0015035: protein disulfide oxidoreductase activity	1.08E-02
41	GO:0033612: receptor serine/threonine kinase binding	1.13E-02
42	GO:0005451: monovalent cation:proton antiporter activity	1.51E-02
43	GO:0046873: metal ion transmembrane transporter activity	1.60E-02
44	GO:0030276: clathrin binding	1.60E-02
45	GO:0015299: solute:proton antiporter activity	1.68E-02
46	GO:0004872: receptor activity	1.77E-02
47	GO:0015385: sodium:proton antiporter activity	2.03E-02
48	GO:0008483: transaminase activity	2.22E-02
49	GO:0008375: acetylglucosaminyltransferase activity	2.61E-02
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.61E-02
51	GO:0004683: calmodulin-dependent protein kinase activity	2.71E-02
52	GO:0046872: metal ion binding	2.81E-02
53	GO:0015238: drug transmembrane transporter activity	3.02E-02
54	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.45E-02
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.67E-02
56	GO:0004364: glutathione transferase activity	4.01E-02
57	GO:0051537: 2 iron, 2 sulfur cluster binding	4.36E-02
58	GO:0005198: structural molecule activity	4.48E-02
59	GO:0004722: protein serine/threonine phosphatase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0005953: CAAX-protein geranylgeranyltransferase complex	1.88E-04
2	GO:0031314: extrinsic component of mitochondrial inner membrane	4.24E-04
3	GO:0000813: ESCRT I complex	1.66E-03
4	GO:0000164: protein phosphatase type 1 complex	1.66E-03
5	GO:0031463: Cul3-RING ubiquitin ligase complex	2.05E-03
6	GO:0005886: plasma membrane	3.03E-03
7	GO:0000325: plant-type vacuole	3.88E-03
8	GO:0030125: clathrin vesicle coat	5.42E-03
9	GO:0005740: mitochondrial envelope	5.42E-03
10	GO:0005737: cytoplasm	6.95E-03
11	GO:0005795: Golgi stack	8.47E-03
12	GO:0005758: mitochondrial intermembrane space	9.83E-03
13	GO:0005905: clathrin-coated pit	1.13E-02
14	GO:0030136: clathrin-coated vesicle	1.43E-02
15	GO:0005770: late endosome	1.60E-02
16	GO:0000145: exocyst	1.94E-02
17	GO:0032580: Golgi cisterna membrane	2.13E-02
18	GO:0009707: chloroplast outer membrane	2.91E-02
19	GO:0016021: integral component of membrane	3.05E-02
20	GO:0090406: pollen tube	4.13E-02
21	GO:0005743: mitochondrial inner membrane	4.79E-02