Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0080127: fruit septum development0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0006907: pinocytosis0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0009733: response to auxin2.80E-09
13GO:0009734: auxin-activated signaling pathway2.52E-08
14GO:0043039: tRNA aminoacylation5.31E-05
15GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.17E-04
16GO:0046620: regulation of organ growth1.93E-04
17GO:0040008: regulation of growth2.10E-04
18GO:0000373: Group II intron splicing3.36E-04
19GO:0048829: root cap development5.25E-04
20GO:0009658: chloroplast organization7.36E-04
21GO:0048497: maintenance of floral organ identity7.65E-04
22GO:0016123: xanthophyll biosynthetic process7.65E-04
23GO:0010583: response to cyclopentenone1.03E-03
24GO:0016554: cytidine to uridine editing1.05E-03
25GO:0034757: negative regulation of iron ion transport1.16E-03
26GO:0006434: seryl-tRNA aminoacylation1.16E-03
27GO:0042659: regulation of cell fate specification1.16E-03
28GO:0000025: maltose catabolic process1.16E-03
29GO:0070509: calcium ion import1.16E-03
30GO:0010726: positive regulation of hydrogen peroxide metabolic process1.16E-03
31GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process1.16E-03
32GO:0006438: valyl-tRNA aminoacylation1.16E-03
33GO:0032958: inositol phosphate biosynthetic process1.16E-03
34GO:0090558: plant epidermis development1.16E-03
35GO:0010480: microsporocyte differentiation1.16E-03
36GO:0006426: glycyl-tRNA aminoacylation1.16E-03
37GO:0046520: sphingoid biosynthetic process1.16E-03
38GO:0042759: long-chain fatty acid biosynthetic process1.16E-03
39GO:0035987: endodermal cell differentiation1.16E-03
40GO:0015904: tetracycline transport1.16E-03
41GO:0051013: microtubule severing1.16E-03
42GO:0009926: auxin polar transport1.23E-03
43GO:0030488: tRNA methylation1.39E-03
44GO:0009736: cytokinin-activated signaling pathway2.10E-03
45GO:0000105: histidine biosynthetic process2.23E-03
46GO:0061062: regulation of nematode larval development2.55E-03
47GO:0010271: regulation of chlorophyll catabolic process2.55E-03
48GO:0018026: peptidyl-lysine monomethylation2.55E-03
49GO:0071497: cellular response to freezing2.55E-03
50GO:0001736: establishment of planar polarity2.55E-03
51GO:0080009: mRNA methylation2.55E-03
52GO:0009786: regulation of asymmetric cell division2.55E-03
53GO:0031648: protein destabilization2.55E-03
54GO:2000123: positive regulation of stomatal complex development2.55E-03
55GO:0010024: phytochromobilin biosynthetic process2.55E-03
56GO:0009686: gibberellin biosynthetic process2.62E-03
57GO:0000160: phosphorelay signal transduction system2.70E-03
58GO:0016042: lipid catabolic process2.97E-03
59GO:0006865: amino acid transport3.37E-03
60GO:1900865: chloroplast RNA modification3.91E-03
61GO:0009958: positive gravitropism3.95E-03
62GO:0090506: axillary shoot meristem initiation4.25E-03
63GO:0033591: response to L-ascorbic acid4.25E-03
64GO:0090708: specification of plant organ axis polarity4.25E-03
65GO:0080117: secondary growth4.25E-03
66GO:1902448: positive regulation of shade avoidance4.25E-03
67GO:0010226: response to lithium ion4.25E-03
68GO:0071398: cellular response to fatty acid4.25E-03
69GO:0006065: UDP-glucuronate biosynthetic process4.25E-03
70GO:0030029: actin filament-based process4.25E-03
71GO:0048575: short-day photoperiodism, flowering4.25E-03
72GO:0045910: negative regulation of DNA recombination4.25E-03
73GO:0006782: protoporphyrinogen IX biosynthetic process4.59E-03
74GO:0006949: syncytium formation4.59E-03
75GO:0005983: starch catabolic process6.12E-03
76GO:0051639: actin filament network formation6.21E-03
77GO:0034059: response to anoxia6.21E-03
78GO:0007276: gamete generation6.21E-03
79GO:0006424: glutamyl-tRNA aminoacylation6.21E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity6.21E-03
81GO:1990019: protein storage vacuole organization6.21E-03
82GO:0010321: regulation of vegetative phase change6.21E-03
83GO:0010371: regulation of gibberellin biosynthetic process6.21E-03
84GO:0006020: inositol metabolic process6.21E-03
85GO:0051513: regulation of monopolar cell growth6.21E-03
86GO:0007231: osmosensory signaling pathway6.21E-03
87GO:0009828: plant-type cell wall loosening6.67E-03
88GO:0009826: unidimensional cell growth6.85E-03
89GO:0010588: cotyledon vascular tissue pattern formation6.98E-03
90GO:2000012: regulation of auxin polar transport6.98E-03
91GO:0009725: response to hormone6.98E-03
92GO:0009664: plant-type cell wall organization7.60E-03
93GO:0009793: embryo development ending in seed dormancy7.61E-03
94GO:0006351: transcription, DNA-templated7.66E-03
95GO:0010020: chloroplast fission7.90E-03
96GO:0051764: actin crosslink formation8.43E-03
97GO:0042274: ribosomal small subunit biogenesis8.43E-03
98GO:0009765: photosynthesis, light harvesting8.43E-03
99GO:0030104: water homeostasis8.43E-03
100GO:0033500: carbohydrate homeostasis8.43E-03
101GO:2000038: regulation of stomatal complex development8.43E-03
102GO:0042991: transcription factor import into nucleus8.43E-03
103GO:0006021: inositol biosynthetic process8.43E-03
104GO:0009956: radial pattern formation8.43E-03
105GO:0009755: hormone-mediated signaling pathway8.43E-03
106GO:1901141: regulation of lignin biosynthetic process8.43E-03
107GO:0048629: trichome patterning8.43E-03
108GO:0009825: multidimensional cell growth8.88E-03
109GO:0070588: calcium ion transmembrane transport8.88E-03
110GO:0010438: cellular response to sulfur starvation1.09E-02
111GO:0080110: sporopollenin biosynthetic process1.09E-02
112GO:0016131: brassinosteroid metabolic process1.09E-02
113GO:0010375: stomatal complex patterning1.09E-02
114GO:0009696: salicylic acid metabolic process1.09E-02
115GO:0016120: carotene biosynthetic process1.09E-02
116GO:0045487: gibberellin catabolic process1.09E-02
117GO:0009107: lipoate biosynthetic process1.09E-02
118GO:0051017: actin filament bundle assembly1.10E-02
119GO:0010311: lateral root formation1.26E-02
120GO:0003333: amino acid transmembrane transport1.35E-02
121GO:0009913: epidermal cell differentiation1.36E-02
122GO:1902456: regulation of stomatal opening1.36E-02
123GO:0042793: transcription from plastid promoter1.36E-02
124GO:0048831: regulation of shoot system development1.36E-02
125GO:0010358: leaf shaping1.36E-02
126GO:0033365: protein localization to organelle1.36E-02
127GO:0003006: developmental process involved in reproduction1.36E-02
128GO:0018258: protein O-linked glycosylation via hydroxyproline1.36E-02
129GO:0010942: positive regulation of cell death1.36E-02
130GO:0010405: arabinogalactan protein metabolic process1.36E-02
131GO:0007005: mitochondrion organization1.48E-02
132GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.61E-02
133GO:0071215: cellular response to abscisic acid stimulus1.61E-02
134GO:0006355: regulation of transcription, DNA-templated1.62E-02
135GO:2000067: regulation of root morphogenesis1.65E-02
136GO:0048509: regulation of meristem development1.65E-02
137GO:2000033: regulation of seed dormancy process1.65E-02
138GO:0031930: mitochondria-nucleus signaling pathway1.65E-02
139GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.65E-02
140GO:0010019: chloroplast-nucleus signaling pathway1.65E-02
141GO:0010091: trichome branching1.76E-02
142GO:0042127: regulation of cell proliferation1.76E-02
143GO:0007275: multicellular organism development1.87E-02
144GO:0048528: post-embryonic root development1.96E-02
145GO:1900056: negative regulation of leaf senescence1.96E-02
146GO:0030497: fatty acid elongation1.96E-02
147GO:0010098: suspensor development1.96E-02
148GO:0048437: floral organ development1.96E-02
149GO:0010444: guard mother cell differentiation1.96E-02
150GO:0030307: positive regulation of cell growth1.96E-02
151GO:0000082: G1/S transition of mitotic cell cycle1.96E-02
152GO:0015693: magnesium ion transport1.96E-02
153GO:0045995: regulation of embryonic development1.96E-02
154GO:0010087: phloem or xylem histogenesis2.07E-02
155GO:0009744: response to sucrose2.22E-02
156GO:0010305: leaf vascular tissue pattern formation2.23E-02
157GO:0010182: sugar mediated signaling pathway2.23E-02
158GO:0009741: response to brassinosteroid2.23E-02
159GO:0006402: mRNA catabolic process2.29E-02
160GO:0010439: regulation of glucosinolate biosynthetic process2.29E-02
161GO:0009690: cytokinin metabolic process2.29E-02
162GO:0009819: drought recovery2.29E-02
163GO:0009704: de-etiolation2.29E-02
164GO:0042255: ribosome assembly2.29E-02
165GO:2000070: regulation of response to water deprivation2.29E-02
166GO:0006353: DNA-templated transcription, termination2.29E-02
167GO:0010492: maintenance of shoot apical meristem identity2.29E-02
168GO:0055075: potassium ion homeostasis2.29E-02
169GO:0009790: embryo development2.58E-02
170GO:0048825: cotyledon development2.58E-02
171GO:0007186: G-protein coupled receptor signaling pathway2.63E-02
172GO:0006526: arginine biosynthetic process2.63E-02
173GO:0010497: plasmodesmata-mediated intercellular transport2.63E-02
174GO:0032544: plastid translation2.63E-02
175GO:0071554: cell wall organization or biogenesis2.76E-02
176GO:0016132: brassinosteroid biosynthetic process2.76E-02
177GO:0051865: protein autoubiquitination3.00E-02
178GO:0046916: cellular transition metal ion homeostasis3.00E-02
179GO:0048507: meristem development3.00E-02
180GO:0048589: developmental growth3.00E-02
181GO:0009056: catabolic process3.00E-02
182GO:0000902: cell morphogenesis3.00E-02
183GO:0009638: phototropism3.38E-02
184GO:0006779: porphyrin-containing compound biosynthetic process3.38E-02
185GO:2000280: regulation of root development3.38E-02
186GO:0009098: leucine biosynthetic process3.38E-02
187GO:0016571: histone methylation3.38E-02
188GO:0016573: histone acetylation3.38E-02
189GO:0009909: regulation of flower development3.67E-02
190GO:0009299: mRNA transcription3.77E-02
191GO:0010162: seed dormancy process3.77E-02
192GO:0009870: defense response signaling pathway, resistance gene-dependent3.77E-02
193GO:0006298: mismatch repair3.77E-02
194GO:0016441: posttranscriptional gene silencing3.77E-02
195GO:0009739: response to gibberellin3.88E-02
196GO:0010027: thylakoid membrane organization3.99E-02
197GO:0006468: protein phosphorylation4.06E-02
198GO:0048316: seed development4.14E-02
199GO:0048367: shoot system development4.14E-02
200GO:0006816: calcium ion transport4.18E-02
201GO:0009073: aromatic amino acid family biosynthetic process4.18E-02
202GO:0009682: induced systemic resistance4.18E-02
203GO:0008285: negative regulation of cell proliferation4.18E-02
204GO:0009750: response to fructose4.18E-02
205GO:0048229: gametophyte development4.18E-02
206GO:0048765: root hair cell differentiation4.18E-02
207GO:0007165: signal transduction4.25E-02
208GO:0045892: negative regulation of transcription, DNA-templated4.39E-02
209GO:0006790: sulfur compound metabolic process4.60E-02
210GO:0012501: programmed cell death4.60E-02
211GO:0010152: pollen maturation4.60E-02
212GO:0010105: negative regulation of ethylene-activated signaling pathway4.60E-02
213GO:0045037: protein import into chloroplast stroma4.60E-02
214GO:0010582: floral meristem determinacy4.60E-02
215GO:0009740: gibberellic acid mediated signaling pathway4.64E-02
216GO:0015995: chlorophyll biosynthetic process4.69E-02
217GO:0048573: photoperiodism, flowering4.69E-02
218GO:0009624: response to nematode4.99E-02
RankGO TermAdjusted P value
1GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0047661: amino-acid racemase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
9GO:0009899: ent-kaurene synthase activity0.00E+00
10GO:0015267: channel activity0.00E+00
11GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
12GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
13GO:0052834: inositol monophosphate phosphatase activity0.00E+00
14GO:0008805: carbon-monoxide oxygenase activity5.31E-05
15GO:0001872: (1->3)-beta-D-glucan binding3.19E-04
16GO:0010011: auxin binding5.20E-04
17GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity1.16E-03
18GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.16E-03
19GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity1.16E-03
20GO:0005227: calcium activated cation channel activity1.16E-03
21GO:0004134: 4-alpha-glucanotransferase activity1.16E-03
22GO:0004818: glutamate-tRNA ligase activity1.16E-03
23GO:0008568: microtubule-severing ATPase activity1.16E-03
24GO:0004828: serine-tRNA ligase activity1.16E-03
25GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity1.16E-03
26GO:0000828: inositol hexakisphosphate kinase activity1.16E-03
27GO:0004832: valine-tRNA ligase activity1.16E-03
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.16E-03
29GO:0004820: glycine-tRNA ligase activity1.16E-03
30GO:0052381: tRNA dimethylallyltransferase activity1.16E-03
31GO:0033857: diphosphoinositol-pentakisphosphate kinase activity1.16E-03
32GO:0010347: L-galactose-1-phosphate phosphatase activity1.16E-03
33GO:0010012: steroid 22-alpha hydroxylase activity1.16E-03
34GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity1.16E-03
35GO:0000170: sphingosine hydroxylase activity1.16E-03
36GO:0050139: nicotinate-N-glucosyltransferase activity1.16E-03
37GO:0000829: inositol heptakisphosphate kinase activity1.16E-03
38GO:0016788: hydrolase activity, acting on ester bonds2.46E-03
39GO:0052832: inositol monophosphate 3-phosphatase activity2.55E-03
40GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.55E-03
41GO:0004109: coproporphyrinogen oxidase activity2.55E-03
42GO:0019156: isoamylase activity2.55E-03
43GO:0042284: sphingolipid delta-4 desaturase activity2.55E-03
44GO:0008934: inositol monophosphate 1-phosphatase activity2.55E-03
45GO:0008493: tetracycline transporter activity2.55E-03
46GO:0052833: inositol monophosphate 4-phosphatase activity2.55E-03
47GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity2.55E-03
48GO:0050736: O-malonyltransferase activity2.55E-03
49GO:0009884: cytokinin receptor activity2.55E-03
50GO:0017118: lipoyltransferase activity2.55E-03
51GO:0003852: 2-isopropylmalate synthase activity2.55E-03
52GO:0045543: gibberellin 2-beta-dioxygenase activity2.55E-03
53GO:0043425: bHLH transcription factor binding2.55E-03
54GO:0010296: prenylcysteine methylesterase activity2.55E-03
55GO:0016415: octanoyltransferase activity2.55E-03
56GO:0003727: single-stranded RNA binding2.92E-03
57GO:0003913: DNA photolyase activity4.25E-03
58GO:0005034: osmosensor activity4.25E-03
59GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor4.25E-03
60GO:0003979: UDP-glucose 6-dehydrogenase activity4.25E-03
61GO:0052689: carboxylic ester hydrolase activity4.73E-03
62GO:0043621: protein self-association6.04E-03
63GO:0000156: phosphorelay response regulator activity6.16E-03
64GO:0051015: actin filament binding6.16E-03
65GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity6.21E-03
66GO:0080031: methyl salicylate esterase activity6.21E-03
67GO:0045544: gibberellin 20-oxidase activity6.21E-03
68GO:0005262: calcium channel activity6.98E-03
69GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed8.43E-03
70GO:0010328: auxin influx transmembrane transporter activity8.43E-03
71GO:0019199: transmembrane receptor protein kinase activity8.43E-03
72GO:0016279: protein-lysine N-methyltransferase activity8.43E-03
73GO:0015171: amino acid transmembrane transporter activity9.92E-03
74GO:0005471: ATP:ADP antiporter activity1.09E-02
75GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.09E-02
76GO:0008725: DNA-3-methyladenine glycosylase activity1.09E-02
77GO:0005345: purine nucleobase transmembrane transporter activity1.22E-02
78GO:0005096: GTPase activator activity1.26E-02
79GO:0004176: ATP-dependent peptidase activity1.35E-02
80GO:0033612: receptor serine/threonine kinase binding1.35E-02
81GO:0008408: 3'-5' exonuclease activity1.35E-02
82GO:1990714: hydroxyproline O-galactosyltransferase activity1.36E-02
83GO:0004709: MAP kinase kinase kinase activity1.36E-02
84GO:0004556: alpha-amylase activity1.36E-02
85GO:0030983: mismatched DNA binding1.36E-02
86GO:0080030: methyl indole-3-acetate esterase activity1.36E-02
87GO:0003700: transcription factor activity, sequence-specific DNA binding1.43E-02
88GO:0030570: pectate lyase activity1.61E-02
89GO:0051753: mannan synthase activity1.65E-02
90GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.65E-02
91GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.65E-02
92GO:0016832: aldehyde-lyase activity1.65E-02
93GO:0019900: kinase binding1.65E-02
94GO:0043565: sequence-specific DNA binding1.66E-02
95GO:0004871: signal transducer activity1.75E-02
96GO:0005515: protein binding1.84E-02
97GO:0009881: photoreceptor activity1.96E-02
98GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.23E-02
99GO:0016853: isomerase activity2.40E-02
100GO:0050662: coenzyme binding2.40E-02
101GO:0004674: protein serine/threonine kinase activity2.60E-02
102GO:0003724: RNA helicase activity2.63E-02
103GO:0046914: transition metal ion binding2.63E-02
104GO:0008173: RNA methyltransferase activity2.63E-02
105GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2.63E-02
106GO:0004519: endonuclease activity2.79E-02
107GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity3.00E-02
108GO:0016298: lipase activity3.37E-02
109GO:0005200: structural constituent of cytoskeleton3.56E-02
110GO:0008237: metallopeptidase activity3.56E-02
111GO:0003777: microtubule motor activity3.67E-02
112GO:0016413: O-acetyltransferase activity3.77E-02
113GO:0004673: protein histidine kinase activity3.77E-02
114GO:0004805: trehalose-phosphatase activity3.77E-02
115GO:0000049: tRNA binding4.60E-02
116GO:0030247: polysaccharide binding4.69E-02
117GO:0003779: actin binding4.82E-02
118GO:0004722: protein serine/threonine phosphatase activity4.97E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0009507: chloroplast4.02E-04
4GO:0000791: euchromatin1.16E-03
5GO:0009986: cell surface1.78E-03
6GO:0000427: plastid-encoded plastid RNA polymerase complex2.55E-03
7GO:0031357: integral component of chloroplast inner membrane2.55E-03
8GO:0009569: chloroplast starch grain2.55E-03
9GO:0030870: Mre11 complex2.55E-03
10GO:0019897: extrinsic component of plasma membrane4.25E-03
11GO:0030139: endocytic vesicle4.25E-03
12GO:0005886: plasma membrane4.96E-03
13GO:0005884: actin filament5.32E-03
14GO:0032585: multivesicular body membrane6.21E-03
15GO:0032432: actin filament bundle6.21E-03
16GO:0009531: secondary cell wall6.21E-03
17GO:0009941: chloroplast envelope6.62E-03
18GO:0009544: chloroplast ATP synthase complex8.43E-03
19GO:0000795: synaptonemal complex1.09E-02
20GO:0009654: photosystem II oxygen evolving complex1.22E-02
21GO:0000793: condensed chromosome1.36E-02
22GO:0015629: actin cytoskeleton1.61E-02
23GO:0000815: ESCRT III complex1.65E-02
24GO:0046658: anchored component of plasma membrane1.69E-02
25GO:0000794: condensed nuclear chromosome1.96E-02
26GO:0048226: Casparian strip2.29E-02
27GO:0009501: amyloplast2.29E-02
28GO:0019898: extrinsic component of membrane2.58E-02
29GO:0005874: microtubule3.00E-02
30GO:0010494: cytoplasmic stress granule3.00E-02
31GO:0000418: DNA-directed RNA polymerase IV complex3.77E-02
32GO:0016459: myosin complex3.77E-02
33GO:0009570: chloroplast stroma3.89E-02
34GO:0090404: pollen tube tip4.18E-02
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Gene type



Gene DE type