co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
2	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
3	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.64E-05
4	GO:0009220: pyrimidine ribonucleotide biosynthetic process	6.72E-05
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.72E-05
6	GO:0048255: mRNA stabilization	6.72E-05
7	GO:0010569: regulation of double-strand break repair via homologous recombination	6.72E-05
8	GO:0009451: RNA modification	1.11E-04
9	GO:0006013: mannose metabolic process	1.18E-04
10	GO:0002229: defense response to oomycetes	1.37E-04
11	GO:1902476: chloride transmembrane transport	1.76E-04
12	GO:0044205: 'de novo' UMP biosynthetic process	2.39E-04
13	GO:0016558: protein import into peroxisome matrix	3.07E-04
14	GO:0009616: virus induced gene silencing	3.07E-04
15	GO:0006655: phosphatidylglycerol biosynthetic process	3.78E-04
16	GO:0009959: negative gravitropism	3.78E-04
17	GO:0035194: posttranscriptional gene silencing by RNA	3.78E-04
18	GO:0010315: auxin efflux	3.78E-04
19	GO:0009088: threonine biosynthetic process	4.53E-04
20	GO:0006821: chloride transport	5.30E-04
21	GO:0010044: response to aluminum ion	5.30E-04
22	GO:0006401: RNA catabolic process	5.30E-04
23	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	5.30E-04
24	GO:0009827: plant-type cell wall modification	6.94E-04
25	GO:0016024: CDP-diacylglycerol biosynthetic process	1.15E-03
26	GO:0000162: tryptophan biosynthetic process	1.56E-03
27	GO:0009116: nucleoside metabolic process	1.67E-03
28	GO:0006306: DNA methylation	1.90E-03
29	GO:0009693: ethylene biosynthetic process	2.14E-03
30	GO:0006342: chromatin silencing	2.65E-03
31	GO:0008654: phospholipid biosynthetic process	2.91E-03
32	GO:0009851: auxin biosynthetic process	2.91E-03
33	GO:0006635: fatty acid beta-oxidation	3.05E-03
34	GO:0031047: gene silencing by RNA	3.19E-03
35	GO:0009639: response to red or far red light	3.47E-03
36	GO:0008219: cell death	4.69E-03
37	GO:0009834: plant-type secondary cell wall biogenesis	5.02E-03
38	GO:0009793: embryo development ending in seed dormancy	6.26E-03
39	GO:0006364: rRNA processing	8.08E-03
40	GO:0016036: cellular response to phosphate starvation	1.45E-02
41	GO:0010150: leaf senescence	1.52E-02
42	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.65E-02
43	GO:0006952: defense response	1.90E-02
44	GO:0009826: unidimensional cell growth	2.02E-02
45	GO:0009658: chloroplast organization	2.07E-02
46	GO:0046686: response to cadmium ion	2.14E-02
47	GO:0007049: cell cycle	2.24E-02
48	GO:0032259: methylation	3.10E-02
49	GO:0009751: response to salicylic acid	3.16E-02
50	GO:0008152: metabolic process	3.42E-02
51	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.90E-02
52	GO:0009734: auxin-activated signaling pathway	4.07E-02
53	GO:0009738: abscisic acid-activated signaling pathway	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
2	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0015075: ion transmembrane transporter activity	2.64E-05
5	GO:0017091: AU-rich element binding	2.64E-05
6	GO:0004795: threonine synthase activity	2.64E-05
7	GO:0005253: anion channel activity	2.39E-04
8	GO:0005247: voltage-gated chloride channel activity	3.78E-04
9	GO:0004605: phosphatidate cytidylyltransferase activity	3.78E-04
10	GO:0003723: RNA binding	3.98E-04
11	GO:0004559: alpha-mannosidase activity	4.53E-04
12	GO:0003724: RNA helicase activity	6.94E-04
13	GO:0015020: glucuronosyltransferase activity	9.59E-04
14	GO:0009982: pseudouridine synthase activity	1.25E-03
15	GO:0000175: 3'-5'-exoribonuclease activity	1.25E-03
16	GO:0030246: carbohydrate binding	1.30E-03
17	GO:0004540: ribonuclease activity	1.90E-03
18	GO:0008080: N-acetyltransferase activity	2.65E-03
19	GO:0004519: endonuclease activity	4.15E-03
20	GO:0008236: serine-type peptidase activity	4.53E-03
21	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.18E-03
22	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.86E-03
23	GO:0080043: quercetin 3-O-glucosyltransferase activity	9.71E-03
24	GO:0080044: quercetin 7-O-glucosyltransferase activity	9.71E-03
25	GO:0022857: transmembrane transporter activity	9.92E-03
26	GO:0051082: unfolded protein binding	1.03E-02
27	GO:0016758: transferase activity, transferring hexosyl groups	1.19E-02
28	GO:0004252: serine-type endopeptidase activity	1.30E-02
29	GO:0008194: UDP-glycosyltransferase activity	1.65E-02
30	GO:0008168: methyltransferase activity	2.02E-02
31	GO:0043531: ADP binding	2.22E-02
32	GO:0050660: flavin adenine dinucleotide binding	2.30E-02
33	GO:0061630: ubiquitin protein ligase activity	2.51E-02
34	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.75E-02
35	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.97E-02
36	GO:0009055: electron carrier activity	3.36E-02
37	GO:0016887: ATPase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0070176: DRM complex	0.00E+00
2	GO:0000178: exosome (RNase complex)	3.07E-04
3	GO:0034707: chloride channel complex	3.78E-04
4	GO:0005655: nucleolar ribonuclease P complex	4.53E-04
5	GO:0009505: plant-type cell wall	2.88E-03
6	GO:0000932: P-body	3.91E-03
7	GO:0043231: intracellular membrane-bounded organelle	4.20E-03
8	GO:0009507: chloroplast	5.61E-03
9	GO:0009705: plant-type vacuole membrane	1.52E-02
10	GO:0009536: plastid	1.68E-02
11	GO:0031969: chloroplast membrane	2.42E-02
12	GO:0009535: chloroplast thylakoid membrane	3.07E-02
13	GO:0005887: integral component of plasma membrane	3.97E-02
14	GO:0005774: vacuolar membrane	4.73E-02
15	GO:0048046: apoplast	4.96E-02