co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0046620: regulation of organ growth	1.72E-05
5	GO:0009733: response to auxin	1.99E-04
6	GO:0015904: tetracycline transport	4.10E-04
7	GO:0034757: negative regulation of iron ion transport	4.10E-04
8	GO:0000025: maltose catabolic process	4.10E-04
9	GO:0046520: sphingoid biosynthetic process	4.10E-04
10	GO:0006285: base-excision repair, AP site formation	4.10E-04
11	GO:0040008: regulation of growth	5.82E-04
12	GO:0000373: Group II intron splicing	7.02E-04
13	GO:0010271: regulation of chlorophyll catabolic process	8.88E-04
14	GO:1900033: negative regulation of trichome patterning	8.88E-04
15	GO:0009786: regulation of asymmetric cell division	8.88E-04
16	GO:0031648: protein destabilization	8.88E-04
17	GO:0071398: cellular response to fatty acid	1.44E-03
18	GO:0048575: short-day photoperiodism, flowering	1.44E-03
19	GO:0090506: axillary shoot meristem initiation	1.44E-03
20	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.44E-03
21	GO:0080117: secondary growth	1.44E-03
22	GO:0006006: glucose metabolic process	1.44E-03
23	GO:0009734: auxin-activated signaling pathway	2.06E-03
24	GO:0010371: regulation of gibberellin biosynthetic process	2.08E-03
25	GO:0051513: regulation of monopolar cell growth	2.08E-03
26	GO:0034059: response to anoxia	2.08E-03
27	GO:1990019: protein storage vacuole organization	2.08E-03
28	GO:0010431: seed maturation	2.73E-03
29	GO:0048629: trichome patterning	2.80E-03
30	GO:0009755: hormone-mediated signaling pathway	2.80E-03
31	GO:0009926: auxin polar transport	2.91E-03
32	GO:0071215: cellular response to abscisic acid stimulus	3.25E-03
33	GO:0009686: gibberellin biosynthetic process	3.25E-03
34	GO:0006284: base-excision repair	3.54E-03
35	GO:0010438: cellular response to sulfur starvation	3.59E-03
36	GO:0009696: salicylic acid metabolic process	3.59E-03
37	GO:0045487: gibberellin catabolic process	3.59E-03
38	GO:0016131: brassinosteroid metabolic process	3.59E-03
39	GO:0048497: maintenance of floral organ identity	3.59E-03
40	GO:0010087: phloem or xylem histogenesis	4.15E-03
41	GO:0010405: arabinogalactan protein metabolic process	4.44E-03
42	GO:0010358: leaf shaping	4.44E-03
43	GO:0016554: cytidine to uridine editing	4.44E-03
44	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.44E-03
45	GO:0009913: epidermal cell differentiation	4.44E-03
46	GO:1902456: regulation of stomatal opening	4.44E-03
47	GO:0048831: regulation of shoot system development	4.44E-03
48	GO:0003006: developmental process involved in reproduction	4.44E-03
49	GO:0009741: response to brassinosteroid	4.47E-03
50	GO:0010268: brassinosteroid homeostasis	4.47E-03
51	GO:0031930: mitochondria-nucleus signaling pathway	5.35E-03
52	GO:0048509: regulation of meristem development	5.35E-03
53	GO:0030488: tRNA methylation	5.35E-03
54	GO:0071554: cell wall organization or biogenesis	5.53E-03
55	GO:0032502: developmental process	5.90E-03
56	GO:0006955: immune response	6.32E-03
57	GO:0009819: drought recovery	7.35E-03
58	GO:0006402: mRNA catabolic process	7.35E-03
59	GO:0010439: regulation of glucosinolate biosynthetic process	7.35E-03
60	GO:0009690: cytokinin metabolic process	7.35E-03
61	GO:0009704: de-etiolation	7.35E-03
62	GO:2000070: regulation of response to water deprivation	7.35E-03
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.43E-03
64	GO:0007186: G-protein coupled receptor signaling pathway	8.43E-03
65	GO:0010497: plasmodesmata-mediated intercellular transport	8.43E-03
66	GO:0009657: plastid organization	8.43E-03
67	GO:0009056: catabolic process	9.58E-03
68	GO:0009051: pentose-phosphate shunt, oxidative branch	9.58E-03
69	GO:0006098: pentose-phosphate shunt	9.58E-03
70	GO:0048507: meristem development	9.58E-03
71	GO:0051865: protein autoubiquitination	9.58E-03
72	GO:0010018: far-red light signaling pathway	1.08E-02
73	GO:1900865: chloroplast RNA modification	1.08E-02
74	GO:0000160: phosphorelay signal transduction system	1.10E-02
75	GO:0009641: shade avoidance	1.20E-02
76	GO:0016441: posttranscriptional gene silencing	1.20E-02
77	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.20E-02
78	GO:0048829: root cap development	1.20E-02
79	GO:0009682: induced systemic resistance	1.33E-02
80	GO:0009867: jasmonic acid mediated signaling pathway	1.33E-02
81	GO:0009750: response to fructose	1.33E-02
82	GO:0005983: starch catabolic process	1.47E-02
83	GO:0010582: floral meristem determinacy	1.47E-02
84	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.47E-02
85	GO:0006631: fatty acid metabolic process	1.58E-02
86	GO:0006094: gluconeogenesis	1.61E-02
87	GO:0009767: photosynthetic electron transport chain	1.61E-02
88	GO:0010588: cotyledon vascular tissue pattern formation	1.61E-02
89	GO:0010102: lateral root morphogenesis	1.61E-02
90	GO:2000028: regulation of photoperiodism, flowering	1.61E-02
91	GO:0048467: gynoecium development	1.75E-02
92	GO:0010020: chloroplast fission	1.75E-02
93	GO:0010207: photosystem II assembly	1.75E-02
94	GO:0010223: secondary shoot formation	1.75E-02
95	GO:0042546: cell wall biogenesis	1.79E-02
96	GO:0090351: seedling development	1.90E-02
97	GO:0019762: glucosinolate catabolic process	2.05E-02
98	GO:0042753: positive regulation of circadian rhythm	2.05E-02
99	GO:0007165: signal transduction	2.13E-02
100	GO:0005992: trehalose biosynthetic process	2.21E-02
101	GO:0080147: root hair cell development	2.21E-02
102	GO:0009736: cytokinin-activated signaling pathway	2.32E-02
103	GO:0016114: terpenoid biosynthetic process	2.53E-02
104	GO:0016998: cell wall macromolecule catabolic process	2.53E-02
105	GO:0009909: regulation of flower development	2.57E-02
106	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.70E-02
107	GO:0009625: response to insect	2.87E-02
108	GO:0009693: ethylene biosynthetic process	2.87E-02
109	GO:0010082: regulation of root meristem growth	2.87E-02
110	GO:0001944: vasculature development	2.87E-02
111	GO:0070417: cellular response to cold	3.23E-02
112	GO:0009416: response to light stimulus	3.38E-02
113	GO:0010118: stomatal movement	3.41E-02
114	GO:0080022: primary root development	3.41E-02
115	GO:0010501: RNA secondary structure unwinding	3.41E-02
116	GO:0071555: cell wall organization	3.57E-02
117	GO:0010305: leaf vascular tissue pattern formation	3.60E-02
118	GO:0010182: sugar mediated signaling pathway	3.60E-02
119	GO:0048544: recognition of pollen	3.79E-02
120	GO:0007018: microtubule-based movement	3.79E-02
121	GO:0045892: negative regulation of transcription, DNA-templated	3.90E-02
122	GO:0048825: cotyledon development	3.99E-02
123	GO:0009749: response to glucose	3.99E-02
124	GO:0016132: brassinosteroid biosynthetic process	4.18E-02
125	GO:0000302: response to reactive oxygen species	4.18E-02
126	GO:0010583: response to cyclopentenone	4.38E-02
127	GO:0031047: gene silencing by RNA	4.38E-02
128	GO:0019761: glucosinolate biosynthetic process	4.38E-02
129	GO:0009845: seed germination	4.46E-02
130	GO:0016567: protein ubiquitination	4.56E-02
131	GO:1901657: glycosyl compound metabolic process	4.59E-02
132	GO:0016125: sterol metabolic process	4.79E-02
133	GO:0009639: response to red or far red light	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0080030: methyl indole-3-acetate esterase activity	2.21E-04
3	GO:0010012: steroid 22-alpha hydroxylase activity	4.10E-04
4	GO:0000170: sphingosine hydroxylase activity	4.10E-04
5	GO:0050139: nicotinate-N-glucosyltransferase activity	4.10E-04
6	GO:0042834: peptidoglycan binding	4.10E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	4.10E-04
8	GO:0008395: steroid hydroxylase activity	4.10E-04
9	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	4.10E-04
10	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.88E-04
11	GO:0010296: prenylcysteine methylesterase activity	8.88E-04
12	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.88E-04
13	GO:0042284: sphingolipid delta-4 desaturase activity	8.88E-04
14	GO:0008493: tetracycline transporter activity	8.88E-04
15	GO:0009884: cytokinin receptor activity	8.88E-04
16	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.44E-03
17	GO:0005034: osmosensor activity	1.44E-03
18	GO:0080031: methyl salicylate esterase activity	2.08E-03
19	GO:0045544: gibberellin 20-oxidase activity	2.08E-03
20	GO:0001872: (1->3)-beta-D-glucan binding	2.08E-03
21	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.08E-03
22	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.80E-03
23	GO:0019104: DNA N-glycosylase activity	2.80E-03
24	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.80E-03
25	GO:0019199: transmembrane receptor protein kinase activity	2.80E-03
26	GO:0046556: alpha-L-arabinofuranosidase activity	2.80E-03
27	GO:0004871: signal transducer activity	2.97E-03
28	GO:0043621: protein self-association	3.22E-03
29	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.59E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	3.59E-03
31	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.44E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	4.44E-03
33	GO:0004709: MAP kinase kinase kinase activity	4.44E-03
34	GO:0004130: cytochrome-c peroxidase activity	4.44E-03
35	GO:0016688: L-ascorbate peroxidase activity	4.44E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.35E-03
37	GO:0016832: aldehyde-lyase activity	5.35E-03
38	GO:0019900: kinase binding	5.35E-03
39	GO:0016759: cellulose synthase activity	6.70E-03
40	GO:0016413: O-acetyltransferase activity	7.56E-03
41	GO:0003724: RNA helicase activity	8.43E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.22E-03
43	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.58E-03
44	GO:0030234: enzyme regulator activity	1.20E-02
45	GO:0004673: protein histidine kinase activity	1.20E-02
46	GO:0004805: trehalose-phosphatase activity	1.20E-02
47	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.21E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.33E-02
49	GO:0000155: phosphorelay sensor kinase activity	1.61E-02
50	GO:0008146: sulfotransferase activity	1.90E-02
51	GO:0003712: transcription cofactor activity	1.90E-02
52	GO:0051536: iron-sulfur cluster binding	2.21E-02
53	GO:0031418: L-ascorbic acid binding	2.21E-02
54	GO:0043424: protein histidine kinase binding	2.37E-02
55	GO:0005345: purine nucleobase transmembrane transporter activity	2.37E-02
56	GO:0016788: hydrolase activity, acting on ester bonds	2.39E-02
57	GO:0016301: kinase activity	2.44E-02
58	GO:0010333: terpene synthase activity	2.53E-02
59	GO:0033612: receptor serine/threonine kinase binding	2.53E-02
60	GO:0003964: RNA-directed DNA polymerase activity	2.53E-02
61	GO:0016874: ligase activity	3.11E-02
62	GO:0005199: structural constituent of cell wall	3.60E-02
63	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.60E-02
64	GO:0042803: protein homodimerization activity	4.05E-02
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.18E-02
66	GO:0004722: protein serine/threonine phosphatase activity	4.28E-02
67	GO:0004518: nuclease activity	4.38E-02
68	GO:0000156: phosphorelay response regulator activity	4.59E-02
69	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0010494: cytoplasmic stress granule	7.02E-04
3	GO:0030139: endocytic vesicle	1.44E-03
4	GO:0032585: multivesicular body membrane	2.08E-03
5	GO:0009654: photosystem II oxygen evolving complex	2.48E-03
6	GO:0009544: chloroplast ATP synthase complex	2.80E-03
7	GO:0019898: extrinsic component of membrane	5.16E-03
8	GO:0009986: cell surface	6.32E-03
9	GO:0009501: amyloplast	7.35E-03
10	GO:0042644: chloroplast nucleoid	9.58E-03
11	GO:0005578: proteinaceous extracellular matrix	1.61E-02
12	GO:0030095: chloroplast photosystem II	1.75E-02
13	GO:0046658: anchored component of plasma membrane	1.92E-02
14	GO:0005875: microtubule associated complex	2.05E-02
15	GO:0009532: plastid stroma	2.53E-02
16	GO:0005834: heterotrimeric G-protein complex	2.93E-02
17	GO:0005871: kinesin complex	3.23E-02
18	GO:0009504: cell plate	3.99E-02