co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046109: uridine biosynthetic process	0.00E+00
2	GO:0032497: detection of lipopolysaccharide	0.00E+00
3	GO:0033198: response to ATP	0.00E+00
4	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
5	GO:0009626: plant-type hypersensitive response	8.62E-06
6	GO:0000187: activation of MAPK activity	1.11E-05
7	GO:2000037: regulation of stomatal complex patterning	6.99E-05
8	GO:0051180: vitamin transport	1.62E-04
9	GO:0030974: thiamine pyrophosphate transport	1.62E-04
10	GO:1902065: response to L-glutamate	1.62E-04
11	GO:0048482: plant ovule morphogenesis	1.62E-04
12	GO:0010365: positive regulation of ethylene biosynthetic process	1.62E-04
13	GO:0051938: L-glutamate import	1.62E-04
14	GO:0051245: negative regulation of cellular defense response	1.62E-04
15	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.62E-04
16	GO:0010941: regulation of cell death	1.62E-04
17	GO:0010045: response to nickel cation	1.62E-04
18	GO:0046777: protein autophosphorylation	1.97E-04
19	GO:0043069: negative regulation of programmed cell death	2.60E-04
20	GO:0010042: response to manganese ion	3.69E-04
21	GO:0002221: pattern recognition receptor signaling pathway	3.69E-04
22	GO:0043091: L-arginine import	3.69E-04
23	GO:0015802: basic amino acid transport	3.69E-04
24	GO:0015893: drug transport	3.69E-04
25	GO:0010229: inflorescence development	3.96E-04
26	GO:0002237: response to molecule of bacterial origin	4.47E-04
27	GO:0070588: calcium ion transmembrane transport	5.00E-04
28	GO:0051176: positive regulation of sulfur metabolic process	6.04E-04
29	GO:0046621: negative regulation of organ growth	6.04E-04
30	GO:0010581: regulation of starch biosynthetic process	6.04E-04
31	GO:0002230: positive regulation of defense response to virus by host	6.04E-04
32	GO:0009863: salicylic acid mediated signaling pathway	6.16E-04
33	GO:0000165: MAPK cascade	6.88E-04
34	GO:0009814: defense response, incompatible interaction	8.11E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.63E-04
36	GO:0010306: rhamnogalacturonan II biosynthetic process	8.63E-04
37	GO:0006612: protein targeting to membrane	8.63E-04
38	GO:0015696: ammonium transport	8.63E-04
39	GO:0046713: borate transport	8.63E-04
40	GO:0072334: UDP-galactose transmembrane transport	8.63E-04
41	GO:0030100: regulation of endocytosis	8.63E-04
42	GO:0010227: floral organ abscission	8.83E-04
43	GO:0042742: defense response to bacterium	9.00E-04
44	GO:0010200: response to chitin	1.08E-03
45	GO:2000038: regulation of stomatal complex development	1.14E-03
46	GO:0080142: regulation of salicylic acid biosynthetic process	1.14E-03
47	GO:0046345: abscisic acid catabolic process	1.14E-03
48	GO:0072488: ammonium transmembrane transport	1.14E-03
49	GO:0010363: regulation of plant-type hypersensitive response	1.14E-03
50	GO:0022622: root system development	1.14E-03
51	GO:0006952: defense response	1.18E-03
52	GO:0045487: gibberellin catabolic process	1.45E-03
53	GO:0002229: defense response to oomycetes	1.47E-03
54	GO:1900425: negative regulation of defense response to bacterium	1.78E-03
55	GO:0048317: seed morphogenesis	1.78E-03
56	GO:0051607: defense response to virus	1.99E-03
57	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.14E-03
58	GO:0010038: response to metal ion	2.52E-03
59	GO:0010161: red light signaling pathway	2.52E-03
60	GO:0046470: phosphatidylcholine metabolic process	2.52E-03
61	GO:1900056: negative regulation of leaf senescence	2.52E-03
62	GO:0008219: cell death	2.74E-03
63	GO:0007166: cell surface receptor signaling pathway	2.87E-03
64	GO:0032875: regulation of DNA endoreduplication	2.91E-03
65	GO:1900150: regulation of defense response to fungus	2.91E-03
66	GO:0045087: innate immune response	3.46E-03
67	GO:0051865: protein autoubiquitination	3.77E-03
68	GO:0090333: regulation of stomatal closure	3.77E-03
69	GO:0009060: aerobic respiration	3.77E-03
70	GO:0010449: root meristem growth	4.22E-03
71	GO:0007064: mitotic sister chromatid cohesion	4.69E-03
72	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.69E-03
73	GO:0006032: chitin catabolic process	4.69E-03
74	GO:0000272: polysaccharide catabolic process	5.19E-03
75	GO:0080167: response to karrikin	5.53E-03
76	GO:0007034: vacuolar transport	6.76E-03
77	GO:0006446: regulation of translational initiation	6.76E-03
78	GO:0034605: cellular response to heat	6.76E-03
79	GO:0010053: root epidermal cell differentiation	7.32E-03
80	GO:0042343: indole glucosinolate metabolic process	7.32E-03
81	GO:0006468: protein phosphorylation	7.43E-03
82	GO:0009620: response to fungus	7.78E-03
83	GO:0006071: glycerol metabolic process	7.90E-03
84	GO:0009742: brassinosteroid mediated signaling pathway	9.04E-03
85	GO:0006629: lipid metabolic process	9.08E-03
86	GO:0009695: jasmonic acid biosynthetic process	9.09E-03
87	GO:0031408: oxylipin biosynthetic process	9.72E-03
88	GO:0003333: amino acid transmembrane transport	9.72E-03
89	GO:0016998: cell wall macromolecule catabolic process	9.72E-03
90	GO:0098542: defense response to other organism	9.72E-03
91	GO:0048278: vesicle docking	9.72E-03
92	GO:0016226: iron-sulfur cluster assembly	1.04E-02
93	GO:0071456: cellular response to hypoxia	1.04E-02
94	GO:0009686: gibberellin biosynthetic process	1.10E-02
95	GO:0070417: cellular response to cold	1.24E-02
96	GO:0000271: polysaccharide biosynthetic process	1.31E-02
97	GO:0042391: regulation of membrane potential	1.31E-02
98	GO:0045489: pectin biosynthetic process	1.38E-02
99	GO:0071472: cellular response to salt stress	1.38E-02
100	GO:0048544: recognition of pollen	1.45E-02
101	GO:0061025: membrane fusion	1.45E-02
102	GO:0006891: intra-Golgi vesicle-mediated transport	1.60E-02
103	GO:0010193: response to ozone	1.60E-02
104	GO:0016032: viral process	1.67E-02
105	GO:0009617: response to bacterium	1.77E-02
106	GO:0009639: response to red or far red light	1.83E-02
107	GO:0009409: response to cold	2.03E-02
108	GO:0001666: response to hypoxia	2.07E-02
109	GO:0009615: response to virus	2.07E-02
110	GO:0009911: positive regulation of flower development	2.07E-02
111	GO:0006906: vesicle fusion	2.24E-02
112	GO:0050832: defense response to fungus	2.28E-02
113	GO:0048573: photoperiodism, flowering	2.33E-02
114	GO:0016049: cell growth	2.42E-02
115	GO:0006970: response to osmotic stress	2.47E-02
116	GO:0030244: cellulose biosynthetic process	2.51E-02
117	GO:0006499: N-terminal protein myristoylation	2.69E-02
118	GO:0010043: response to zinc ion	2.78E-02
119	GO:0009631: cold acclimation	2.78E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	2.97E-02
121	GO:0016051: carbohydrate biosynthetic process	2.97E-02
122	GO:0044550: secondary metabolite biosynthetic process	3.09E-02
123	GO:0006839: mitochondrial transport	3.26E-02
124	GO:0006887: exocytosis	3.35E-02
125	GO:0006897: endocytosis	3.35E-02
126	GO:0006886: intracellular protein transport	3.51E-02
127	GO:0000209: protein polyubiquitination	3.66E-02
128	GO:0031347: regulation of defense response	4.07E-02
129	GO:0016042: lipid catabolic process	4.07E-02
130	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.07E-02
131	GO:0042538: hyperosmotic salinity response	4.18E-02
132	GO:0009809: lignin biosynthetic process	4.39E-02
133	GO:0009909: regulation of flower development	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0016301: kinase activity	1.87E-05
2	GO:0004708: MAP kinase kinase activity	1.20E-04
3	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	1.62E-04
4	GO:0046027: phospholipid:diacylglycerol acyltransferase activity	1.62E-04
5	GO:0090422: thiamine pyrophosphate transporter activity	1.62E-04
6	GO:0015085: calcium ion transmembrane transporter activity	1.62E-04
7	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.62E-04
8	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.62E-04
9	GO:0004674: protein serine/threonine kinase activity	2.78E-04
10	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.69E-04
11	GO:0017110: nucleoside-diphosphatase activity	3.69E-04
12	GO:0005388: calcium-transporting ATPase activity	3.96E-04
13	GO:0046423: allene-oxide cyclase activity	6.04E-04
14	GO:0004751: ribose-5-phosphate isomerase activity	6.04E-04
15	GO:0016595: glutamate binding	6.04E-04
16	GO:0016174: NAD(P)H oxidase activity	6.04E-04
17	GO:0015189: L-lysine transmembrane transporter activity	8.63E-04
18	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	8.63E-04
19	GO:0015181: arginine transmembrane transporter activity	8.63E-04
20	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.14E-03
21	GO:0005313: L-glutamate transmembrane transporter activity	1.14E-03
22	GO:0047631: ADP-ribose diphosphatase activity	1.45E-03
23	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.45E-03
24	GO:0010294: abscisic acid glucosyltransferase activity	1.45E-03
25	GO:0008374: O-acyltransferase activity	1.45E-03
26	GO:0005459: UDP-galactose transmembrane transporter activity	1.45E-03
27	GO:0000210: NAD+ diphosphatase activity	1.78E-03
28	GO:0035252: UDP-xylosyltransferase activity	1.78E-03
29	GO:0008519: ammonium transmembrane transporter activity	1.78E-03
30	GO:0004709: MAP kinase kinase kinase activity	1.78E-03
31	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.88E-03
32	GO:0019900: kinase binding	2.14E-03
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.22E-03
34	GO:0004620: phospholipase activity	2.52E-03
35	GO:0052747: sinapyl alcohol dehydrogenase activity	2.91E-03
36	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.91E-03
37	GO:0004630: phospholipase D activity	3.33E-03
38	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.33E-03
39	GO:0005524: ATP binding	3.63E-03
40	GO:0015174: basic amino acid transmembrane transporter activity	4.22E-03
41	GO:0004568: chitinase activity	4.69E-03
42	GO:0008047: enzyme activator activity	4.69E-03
43	GO:0004713: protein tyrosine kinase activity	4.69E-03
44	GO:0043531: ADP binding	4.73E-03
45	GO:0008559: xenobiotic-transporting ATPase activity	5.19E-03
46	GO:0047372: acylglycerol lipase activity	5.19E-03
47	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.69E-03
48	GO:0008234: cysteine-type peptidase activity	6.63E-03
49	GO:0008061: chitin binding	7.32E-03
50	GO:0030552: cAMP binding	7.32E-03
51	GO:0030553: cGMP binding	7.32E-03
52	GO:0043130: ubiquitin binding	8.48E-03
53	GO:0005216: ion channel activity	9.09E-03
54	GO:0033612: receptor serine/threonine kinase binding	9.72E-03
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.04E-02
56	GO:0005249: voltage-gated potassium channel activity	1.31E-02
57	GO:0030551: cyclic nucleotide binding	1.31E-02
58	GO:0003713: transcription coactivator activity	1.38E-02
59	GO:0004842: ubiquitin-protein transferase activity	2.10E-02
60	GO:0004672: protein kinase activity	2.30E-02
61	GO:0004721: phosphoprotein phosphatase activity	2.33E-02
62	GO:0004806: triglyceride lipase activity	2.33E-02
63	GO:0008270: zinc ion binding	2.44E-02
64	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.78E-02
65	GO:0019825: oxygen binding	2.93E-02
66	GO:0005516: calmodulin binding	3.14E-02
67	GO:0000149: SNARE binding	3.16E-02
68	GO:0005484: SNAP receptor activity	3.55E-02
69	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.67E-02
70	GO:0051287: NAD binding	4.07E-02
71	GO:0005509: calcium ion binding	4.09E-02
72	GO:0005506: iron ion binding	4.43E-02
73	GO:0009055: electron carrier activity	4.48E-02
74	GO:0016298: lipase activity	4.50E-02
75	GO:0015171: amino acid transmembrane transporter activity	4.72E-02
76	GO:0031625: ubiquitin protein ligase binding	4.72E-02
77	GO:0045735: nutrient reservoir activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.34E-04
2	GO:0030173: integral component of Golgi membrane	2.14E-03
3	GO:0005887: integral component of plasma membrane	2.95E-03
4	GO:0090404: pollen tube tip	5.19E-03
5	GO:0030176: integral component of endoplasmic reticulum membrane	7.32E-03
6	GO:0005795: Golgi stack	7.32E-03
7	GO:0005875: microtubule associated complex	7.90E-03
8	GO:0043234: protein complex	7.90E-03
9	GO:0012505: endomembrane system	8.27E-03
10	GO:0000325: plant-type vacuole	2.78E-02
11	GO:0031201: SNARE complex	3.35E-02
12	GO:0005768: endosome	3.97E-02
13	GO:0016021: integral component of membrane	4.03E-02
14	GO:0005737: cytoplasm	4.52E-02
15	GO:0043231: intracellular membrane-bounded organelle	4.60E-02