co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0061062: regulation of nematode larval development	5.29E-06
6	GO:0009686: gibberellin biosynthetic process	1.36E-05
7	GO:0009733: response to auxin	7.87E-05
8	GO:0045786: negative regulation of cell cycle	3.42E-04
9	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.42E-04
10	GO:0032958: inositol phosphate biosynthetic process	3.42E-04
11	GO:0046620: regulation of organ growth	3.67E-04
12	GO:0007186: G-protein coupled receptor signaling pathway	4.51E-04
13	GO:0043039: tRNA aminoacylation	7.45E-04
14	GO:0006423: cysteinyl-tRNA aminoacylation	7.45E-04
15	GO:0080005: photosystem stoichiometry adjustment	7.45E-04
16	GO:0009734: auxin-activated signaling pathway	1.20E-03
17	GO:0090506: axillary shoot meristem initiation	1.21E-03
18	GO:0006518: peptide metabolic process	1.21E-03
19	GO:0048575: short-day photoperiodism, flowering	1.21E-03
20	GO:0009887: animal organ morphogenesis	1.25E-03
21	GO:0006863: purine nucleobase transport	1.55E-03
22	GO:0007276: gamete generation	1.74E-03
23	GO:0006424: glutamyl-tRNA aminoacylation	1.74E-03
24	GO:0010321: regulation of vegetative phase change	1.74E-03
25	GO:0006020: inositol metabolic process	1.74E-03
26	GO:0009416: response to light stimulus	1.89E-03
27	GO:0009926: auxin polar transport	2.06E-03
28	GO:0042991: transcription factor import into nucleus	2.33E-03
29	GO:0006021: inositol biosynthetic process	2.33E-03
30	GO:0009956: radial pattern formation	2.33E-03
31	GO:0048629: trichome patterning	2.33E-03
32	GO:0042127: regulation of cell proliferation	2.71E-03
33	GO:0045487: gibberellin catabolic process	2.98E-03
34	GO:0048497: maintenance of floral organ identity	2.98E-03
35	GO:0006351: transcription, DNA-templated	3.30E-03
36	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.68E-03
37	GO:0016554: cytidine to uridine editing	3.68E-03
38	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.68E-03
39	GO:0003006: developmental process involved in reproduction	3.68E-03
40	GO:0010942: positive regulation of cell death	3.68E-03
41	GO:0016567: protein ubiquitination	4.22E-03
42	GO:0009740: gibberellic acid mediated signaling pathway	4.38E-03
43	GO:0006694: steroid biosynthetic process	4.43E-03
44	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.43E-03
45	GO:0010583: response to cyclopentenone	4.50E-03
46	GO:0019760: glucosinolate metabolic process	5.11E-03
47	GO:0007050: cell cycle arrest	5.23E-03
48	GO:0000082: G1/S transition of mitotic cell cycle	5.23E-03
49	GO:0010444: guard mother cell differentiation	5.23E-03
50	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.23E-03
51	GO:0042255: ribosome assembly	6.08E-03
52	GO:0006353: DNA-templated transcription, termination	6.08E-03
53	GO:0006402: mRNA catabolic process	6.08E-03
54	GO:0010492: maintenance of shoot apical meristem identity	6.08E-03
55	GO:0000105: histidine biosynthetic process	6.08E-03
56	GO:0048573: photoperiodism, flowering	7.19E-03
57	GO:0071555: cell wall organization	7.61E-03
58	GO:0048507: meristem development	7.91E-03
59	GO:0048589: developmental growth	7.91E-03
60	GO:0009056: catabolic process	7.91E-03
61	GO:0006811: ion transport	8.79E-03
62	GO:1900865: chloroplast RNA modification	8.89E-03
63	GO:0006949: syncytium formation	9.92E-03
64	GO:0010629: negative regulation of gene expression	9.92E-03
65	GO:0006782: protoporphyrinogen IX biosynthetic process	9.92E-03
66	GO:0009641: shade avoidance	9.92E-03
67	GO:0048364: root development	1.02E-02
68	GO:0008285: negative regulation of cell proliferation	1.10E-02
69	GO:0009739: response to gibberellin	1.10E-02
70	GO:0009750: response to fructose	1.10E-02
71	GO:0006355: regulation of transcription, DNA-templated	1.19E-02
72	GO:0006790: sulfur compound metabolic process	1.21E-02
73	GO:0012501: programmed cell death	1.21E-02
74	GO:0005983: starch catabolic process	1.21E-02
75	GO:0010582: floral meristem determinacy	1.21E-02
76	GO:0010152: pollen maturation	1.21E-02
77	GO:0009744: response to sucrose	1.31E-02
78	GO:0009767: photosynthetic electron transport chain	1.32E-02
79	GO:0010102: lateral root morphogenesis	1.32E-02
80	GO:2000028: regulation of photoperiodism, flowering	1.32E-02
81	GO:0042546: cell wall biogenesis	1.36E-02
82	GO:0006302: double-strand break repair	1.44E-02
83	GO:0048768: root hair cell tip growth	1.44E-02
84	GO:0048467: gynoecium development	1.44E-02
85	GO:0009933: meristem structural organization	1.44E-02
86	GO:0010223: secondary shoot formation	1.44E-02
87	GO:0010540: basipetal auxin transport	1.44E-02
88	GO:0009825: multidimensional cell growth	1.56E-02
89	GO:0046854: phosphatidylinositol phosphorylation	1.56E-02
90	GO:0009664: plant-type cell wall organization	1.64E-02
91	GO:0009658: chloroplast organization	1.66E-02
92	GO:0006636: unsaturated fatty acid biosynthetic process	1.69E-02
93	GO:0080147: root hair cell development	1.82E-02
94	GO:0019953: sexual reproduction	1.95E-02
95	GO:0009908: flower development	1.95E-02
96	GO:0006418: tRNA aminoacylation for protein translation	1.95E-02
97	GO:0006874: cellular calcium ion homeostasis	1.95E-02
98	GO:0048366: leaf development	2.04E-02
99	GO:0051321: meiotic cell cycle	2.08E-02
100	GO:0016114: terpenoid biosynthetic process	2.08E-02
101	GO:0007005: mitochondrion organization	2.22E-02
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.27E-02
103	GO:0071215: cellular response to abscisic acid stimulus	2.37E-02
104	GO:0010082: regulation of root meristem growth	2.37E-02
105	GO:0001944: vasculature development	2.37E-02
106	GO:0048443: stamen development	2.51E-02
107	GO:0010091: trichome branching	2.51E-02
108	GO:0009624: response to nematode	2.52E-02
109	GO:0051301: cell division	2.57E-02
110	GO:0045892: negative regulation of transcription, DNA-templated	2.78E-02
111	GO:0000271: polysaccharide biosynthetic process	2.81E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	2.81E-02
113	GO:0045489: pectin biosynthetic process	2.96E-02
114	GO:0010305: leaf vascular tissue pattern formation	2.96E-02
115	GO:0009958: positive gravitropism	2.96E-02
116	GO:0010182: sugar mediated signaling pathway	2.96E-02
117	GO:0009741: response to brassinosteroid	2.96E-02
118	GO:0007018: microtubule-based movement	3.12E-02
119	GO:0048825: cotyledon development	3.28E-02
120	GO:0009749: response to glucose	3.28E-02
121	GO:0071554: cell wall organization or biogenesis	3.44E-02
122	GO:0002229: defense response to oomycetes	3.44E-02
123	GO:0032502: developmental process	3.61E-02
124	GO:0030163: protein catabolic process	3.78E-02
125	GO:0009567: double fertilization forming a zygote and endosperm	3.95E-02
126	GO:0009639: response to red or far red light	3.95E-02
127	GO:0009828: plant-type cell wall loosening	3.95E-02
128	GO:0006468: protein phosphorylation	4.09E-02
129	GO:0040008: regulation of growth	4.14E-02
130	GO:0000910: cytokinesis	4.30E-02
131	GO:0016126: sterol biosynthetic process	4.47E-02
132	GO:0006470: protein dephosphorylation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0000829: inositol heptakisphosphate kinase activity	3.42E-04
6	GO:0000828: inositol hexakisphosphate kinase activity	3.42E-04
7	GO:0004818: glutamate-tRNA ligase activity	3.42E-04
8	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.42E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.42E-04
10	GO:0052832: inositol monophosphate 3-phosphatase activity	7.45E-04
11	GO:0004817: cysteine-tRNA ligase activity	7.45E-04
12	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.45E-04
13	GO:0004109: coproporphyrinogen oxidase activity	7.45E-04
14	GO:0008805: carbon-monoxide oxygenase activity	7.45E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	7.45E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	7.45E-04
17	GO:0019156: isoamylase activity	7.45E-04
18	GO:0017022: myosin binding	7.45E-04
19	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.45E-04
20	GO:0010296: prenylcysteine methylesterase activity	7.45E-04
21	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.21E-03
22	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.58E-03
23	GO:0045544: gibberellin 20-oxidase activity	1.74E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.74E-03
25	GO:0004871: signal transducer activity	1.84E-03
26	GO:0005345: purine nucleobase transmembrane transporter activity	1.90E-03
27	GO:0010011: auxin binding	2.33E-03
28	GO:0004930: G-protein coupled receptor activity	2.33E-03
29	GO:0043565: sequence-specific DNA binding	2.75E-03
30	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.98E-03
31	GO:0004709: MAP kinase kinase kinase activity	3.68E-03
32	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.68E-03
33	GO:0030332: cyclin binding	3.68E-03
34	GO:0004556: alpha-amylase activity	3.68E-03
35	GO:0004462: lactoylglutathione lyase activity	3.68E-03
36	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.43E-03
37	GO:0016832: aldehyde-lyase activity	4.43E-03
38	GO:0004518: nuclease activity	4.50E-03
39	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.98E-03
40	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.11E-02
41	GO:0000049: tRNA binding	1.21E-02
42	GO:0003725: double-stranded RNA binding	1.32E-02
43	GO:0005217: intracellular ligand-gated ion channel activity	1.56E-02
44	GO:0008061: chitin binding	1.56E-02
45	GO:0003712: transcription cofactor activity	1.56E-02
46	GO:0004970: ionotropic glutamate receptor activity	1.56E-02
47	GO:0004190: aspartic-type endopeptidase activity	1.56E-02
48	GO:0008134: transcription factor binding	1.82E-02
49	GO:0003777: microtubule motor activity	1.96E-02
50	GO:0010333: terpene synthase activity	2.08E-02
51	GO:0033612: receptor serine/threonine kinase binding	2.08E-02
52	GO:0008408: 3'-5' exonuclease activity	2.08E-02
53	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.22E-02
54	GO:0003727: single-stranded RNA binding	2.51E-02
55	GO:0004812: aminoacyl-tRNA ligase activity	2.66E-02
56	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.96E-02
57	GO:0001085: RNA polymerase II transcription factor binding	2.96E-02
58	GO:0005199: structural constituent of cell wall	2.96E-02
59	GO:0004722: protein serine/threonine phosphatase activity	3.06E-02
60	GO:0016853: isomerase activity	3.12E-02
61	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.44E-02
62	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.58E-02
63	GO:0046983: protein dimerization activity	3.66E-02
64	GO:0016791: phosphatase activity	3.95E-02
65	GO:0016759: cellulose synthase activity	3.95E-02
66	GO:0004672: protein kinase activity	4.28E-02
67	GO:0016413: O-acetyltransferase activity	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	3.42E-04
3	GO:0009569: chloroplast starch grain	7.45E-04
4	GO:0030870: Mre11 complex	7.45E-04
5	GO:0008287: protein serine/threonine phosphatase complex	1.21E-03
6	GO:0009531: secondary cell wall	1.74E-03
7	GO:0000795: synaptonemal complex	2.98E-03
8	GO:0005875: microtubule associated complex	1.69E-02
9	GO:0005871: kinesin complex	2.66E-02
10	GO:0009504: cell plate	3.28E-02
11	GO:0005634: nucleus	3.61E-02
12	GO:0000785: chromatin	3.61E-02
13	GO:0010319: stromule	4.12E-02
14	GO:0030529: intracellular ribonucleoprotein complex	4.47E-02
15	GO:0005667: transcription factor complex	4.84E-02