co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0043972: histone H3-K23 acetylation	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0044154: histone H3-K14 acetylation	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0009451: RNA modification	2.14E-04
7	GO:0006436: tryptophanyl-tRNA aminoacylation	2.72E-04
8	GO:0000066: mitochondrial ornithine transport	2.72E-04
9	GO:0034757: negative regulation of iron ion transport	2.72E-04
10	GO:0051171: regulation of nitrogen compound metabolic process	2.72E-04
11	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.72E-04
12	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.72E-04
13	GO:0043971: histone H3-K18 acetylation	2.72E-04
14	GO:0019478: D-amino acid catabolic process	2.72E-04
15	GO:0010271: regulation of chlorophyll catabolic process	5.99E-04
16	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.99E-04
17	GO:0006650: glycerophospholipid metabolic process	5.99E-04
18	GO:0010540: basipetal auxin transport	9.06E-04
19	GO:0080117: secondary growth	9.72E-04
20	GO:0042780: tRNA 3'-end processing	9.72E-04
21	GO:0045493: xylan catabolic process	9.72E-04
22	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	9.72E-04
23	GO:0046168: glycerol-3-phosphate catabolic process	9.72E-04
24	GO:0006013: mannose metabolic process	9.72E-04
25	GO:0080188: RNA-directed DNA methylation	1.01E-03
26	GO:0009800: cinnamic acid biosynthetic process	1.39E-03
27	GO:0010306: rhamnogalacturonan II biosynthetic process	1.39E-03
28	GO:0010255: glucose mediated signaling pathway	1.39E-03
29	GO:0045017: glycerolipid biosynthetic process	1.39E-03
30	GO:0009102: biotin biosynthetic process	1.39E-03
31	GO:0034059: response to anoxia	1.39E-03
32	GO:0006072: glycerol-3-phosphate metabolic process	1.39E-03
33	GO:0015846: polyamine transport	1.86E-03
34	GO:0006021: inositol biosynthetic process	1.86E-03
35	GO:0009956: radial pattern formation	1.86E-03
36	GO:0031365: N-terminal protein amino acid modification	2.37E-03
37	GO:0010158: abaxial cell fate specification	2.37E-03
38	GO:0009696: salicylic acid metabolic process	2.37E-03
39	GO:0048868: pollen tube development	2.45E-03
40	GO:0009793: embryo development ending in seed dormancy	2.54E-03
41	GO:0048831: regulation of shoot system development	2.93E-03
42	GO:0048827: phyllome development	2.93E-03
43	GO:0006559: L-phenylalanine catabolic process	2.93E-03
44	GO:0007264: small GTPase mediated signal transduction	3.22E-03
45	GO:0048509: regulation of meristem development	3.52E-03
46	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.52E-03
47	GO:0009610: response to symbiotic fungus	4.15E-03
48	GO:0010050: vegetative phase change	4.15E-03
49	GO:0009850: auxin metabolic process	4.82E-03
50	GO:0000105: histidine biosynthetic process	4.82E-03
51	GO:0006353: DNA-templated transcription, termination	4.82E-03
52	GO:0009627: systemic acquired resistance	4.86E-03
53	GO:0032544: plastid translation	5.52E-03
54	GO:0044030: regulation of DNA methylation	5.52E-03
55	GO:0009827: plant-type cell wall modification	5.52E-03
56	GO:0009657: plastid organization	5.52E-03
57	GO:0000160: phosphorelay signal transduction system	5.97E-03
58	GO:0000373: Group II intron splicing	6.25E-03
59	GO:0008202: steroid metabolic process	7.03E-03
60	GO:0010018: far-red light signaling pathway	7.03E-03
61	GO:0010380: regulation of chlorophyll biosynthetic process	7.03E-03
62	GO:0006535: cysteine biosynthetic process from serine	7.82E-03
63	GO:0019538: protein metabolic process	7.82E-03
64	GO:0016485: protein processing	8.66E-03
65	GO:0006790: sulfur compound metabolic process	9.52E-03
66	GO:0010582: floral meristem determinacy	9.52E-03
67	GO:0010229: inflorescence development	1.04E-02
68	GO:0010020: chloroplast fission	1.13E-02
69	GO:0009933: meristem structural organization	1.13E-02
70	GO:0046854: phosphatidylinositol phosphorylation	1.23E-02
71	GO:0009825: multidimensional cell growth	1.23E-02
72	GO:0009736: cytokinin-activated signaling pathway	1.26E-02
73	GO:0042753: positive regulation of circadian rhythm	1.33E-02
74	GO:0006863: purine nucleobase transport	1.33E-02
75	GO:0009416: response to light stimulus	1.37E-02
76	GO:0006289: nucleotide-excision repair	1.43E-02
77	GO:0019344: cysteine biosynthetic process	1.43E-02
78	GO:0030150: protein import into mitochondrial matrix	1.43E-02
79	GO:0010187: negative regulation of seed germination	1.43E-02
80	GO:0010073: meristem maintenance	1.53E-02
81	GO:0006418: tRNA aminoacylation for protein translation	1.53E-02
82	GO:0006306: DNA methylation	1.64E-02
83	GO:0016226: iron-sulfur cluster assembly	1.75E-02
84	GO:0035428: hexose transmembrane transport	1.75E-02
85	GO:0071215: cellular response to abscisic acid stimulus	1.86E-02
86	GO:0070417: cellular response to cold	2.09E-02
87	GO:0010087: phloem or xylem histogenesis	2.21E-02
88	GO:0046323: glucose import	2.33E-02
89	GO:0045489: pectin biosynthetic process	2.33E-02
90	GO:0010305: leaf vascular tissue pattern formation	2.33E-02
91	GO:0048825: cotyledon development	2.58E-02
92	GO:0008654: phospholipid biosynthetic process	2.58E-02
93	GO:0080156: mitochondrial mRNA modification	2.71E-02
94	GO:0006633: fatty acid biosynthetic process	2.82E-02
95	GO:0031047: gene silencing by RNA	2.84E-02
96	GO:0009639: response to red or far red light	3.10E-02
97	GO:0016126: sterol biosynthetic process	3.52E-02
98	GO:0009911: positive regulation of flower development	3.52E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.66E-02
100	GO:0010029: regulation of seed germination	3.66E-02
101	GO:0010411: xyloglucan metabolic process	3.95E-02
102	GO:0048481: plant ovule development	4.25E-02
103	GO:0030244: cellulose biosynthetic process	4.25E-02
104	GO:0009817: defense response to fungus, incompatible interaction	4.25E-02
105	GO:0009834: plant-type secondary cell wall biogenesis	4.55E-02
106	GO:0007568: aging	4.71E-02
107	GO:0009910: negative regulation of flower development	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0019808: polyamine binding	0.00E+00
3	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
8	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.72E-04
9	GO:0004830: tryptophan-tRNA ligase activity	2.72E-04
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.72E-04
11	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.72E-04
12	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.72E-04
13	GO:0005290: L-histidine transmembrane transporter activity	2.72E-04
14	GO:0004519: endonuclease activity	3.61E-04
15	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	5.99E-04
16	GO:0050017: L-3-cyanoalanine synthase activity	5.99E-04
17	GO:0004047: aminomethyltransferase activity	5.99E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	5.99E-04
19	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	5.99E-04
20	GO:0008805: carbon-monoxide oxygenase activity	5.99E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	5.99E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	5.99E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	5.99E-04
24	GO:0009884: cytokinin receptor activity	5.99E-04
25	GO:0016805: dipeptidase activity	9.72E-04
26	GO:0005034: osmosensor activity	9.72E-04
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.72E-04
28	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.72E-04
29	GO:0045548: phenylalanine ammonia-lyase activity	9.72E-04
30	GO:0042781: 3'-tRNA processing endoribonuclease activity	9.72E-04
31	GO:0003924: GTPase activity	1.35E-03
32	GO:0043424: protein histidine kinase binding	1.37E-03
33	GO:0080031: methyl salicylate esterase activity	1.39E-03
34	GO:0015189: L-lysine transmembrane transporter activity	1.39E-03
35	GO:0000254: C-4 methylsterol oxidase activity	1.39E-03
36	GO:0015181: arginine transmembrane transporter activity	1.39E-03
37	GO:0070628: proteasome binding	1.86E-03
38	GO:0009044: xylan 1,4-beta-xylosidase activity	1.86E-03
39	GO:0046556: alpha-L-arabinofuranosidase activity	1.86E-03
40	GO:0010385: double-stranded methylated DNA binding	1.86E-03
41	GO:0005471: ATP:ADP antiporter activity	2.37E-03
42	GO:0031593: polyubiquitin binding	2.93E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	2.93E-03
44	GO:0019900: kinase binding	3.52E-03
45	GO:0004559: alpha-mannosidase activity	3.52E-03
46	GO:0004124: cysteine synthase activity	3.52E-03
47	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.52E-03
48	GO:0008237: metallopeptidase activity	3.88E-03
49	GO:0019899: enzyme binding	4.15E-03
50	GO:0008235: metalloexopeptidase activity	4.15E-03
51	GO:0008142: oxysterol binding	5.52E-03
52	GO:0004673: protein histidine kinase activity	7.82E-03
53	GO:0015020: glucuronosyltransferase activity	7.82E-03
54	GO:0008327: methyl-CpG binding	8.66E-03
55	GO:0004177: aminopeptidase activity	8.66E-03
56	GO:0005525: GTP binding	8.84E-03
57	GO:0043621: protein self-association	1.01E-02
58	GO:0000155: phosphorelay sensor kinase activity	1.04E-02
59	GO:0015266: protein channel activity	1.04E-02
60	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.13E-02
61	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.33E-02
62	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.33E-02
63	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.33E-02
64	GO:0043130: ubiquitin binding	1.43E-02
65	GO:0005345: purine nucleobase transmembrane transporter activity	1.53E-02
66	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.64E-02
67	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.64E-02
68	GO:0003723: RNA binding	1.87E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	2.09E-02
70	GO:0004402: histone acetyltransferase activity	2.21E-02
71	GO:0019843: rRNA binding	2.25E-02
72	GO:0001085: RNA polymerase II transcription factor binding	2.33E-02
73	GO:0005355: glucose transmembrane transporter activity	2.45E-02
74	GO:0010181: FMN binding	2.45E-02
75	GO:0030170: pyridoxal phosphate binding	2.50E-02
76	GO:0019901: protein kinase binding	2.58E-02
77	GO:0015144: carbohydrate transmembrane transporter activity	2.69E-02
78	GO:0000156: phosphorelay response regulator activity	2.97E-02
79	GO:0005351: sugar:proton symporter activity	3.03E-02
80	GO:0003684: damaged DNA binding	3.10E-02
81	GO:0008483: transaminase activity	3.24E-02
82	GO:0016413: O-acetyltransferase activity	3.38E-02
83	GO:0008194: UDP-glycosyltransferase activity	3.47E-02
84	GO:0042802: identical protein binding	3.93E-02
85	GO:0004806: triglyceride lipase activity	3.95E-02
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-02
87	GO:0005096: GTPase activator activity	4.40E-02
88	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.55E-02
89	GO:0004222: metalloendopeptidase activity	4.55E-02
90	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.71E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0010370: perinucleolar chromocenter	2.72E-04
4	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.39E-03
5	GO:0009507: chloroplast	2.48E-03
6	GO:0031305: integral component of mitochondrial inner membrane	4.82E-03
7	GO:0009505: plant-type cell wall	6.10E-03
8	GO:0005720: nuclear heterochromatin	6.25E-03
9	GO:0043231: intracellular membrane-bounded organelle	6.64E-03
10	GO:0016602: CCAAT-binding factor complex	1.04E-02
11	GO:0000419: DNA-directed RNA polymerase V complex	1.33E-02
12	GO:0009532: plastid stroma	1.64E-02
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.97E-02
14	GO:0005770: late endosome	2.33E-02
15	GO:0005667: transcription factor complex	3.80E-02
16	GO:0009707: chloroplast outer membrane	4.25E-02
17	GO:0005739: mitochondrion	4.75E-02