Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G41640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070212: protein poly-ADP-ribosylation0.00E+00
2GO:0002764: immune response-regulating signaling pathway0.00E+00
3GO:0009626: plant-type hypersensitive response7.92E-07
4GO:0000187: activation of MAPK activity3.39E-06
5GO:2000037: regulation of stomatal complex patterning2.36E-05
6GO:0010365: positive regulation of ethylene biosynthetic process8.25E-05
7GO:0051938: L-glutamate import8.25E-05
8GO:0051245: negative regulation of cellular defense response8.25E-05
9GO:0099132: ATP hydrolysis coupled cation transmembrane transport8.25E-05
10GO:0010941: regulation of cell death8.25E-05
11GO:0051180: vitamin transport8.25E-05
12GO:0030974: thiamine pyrophosphate transport8.25E-05
13GO:0043069: negative regulation of programmed cell death9.71E-05
14GO:0010229: inflorescence development1.54E-04
15GO:0002237: response to molecule of bacterial origin1.75E-04
16GO:0015802: basic amino acid transport1.97E-04
17GO:0015893: drug transport1.97E-04
18GO:0002221: pattern recognition receptor signaling pathway1.97E-04
19GO:0043091: L-arginine import1.97E-04
20GO:0046777: protein autophosphorylation2.75E-04
21GO:0010581: regulation of starch biosynthetic process3.29E-04
22GO:0002230: positive regulation of defense response to virus by host3.29E-04
23GO:0016045: detection of bacterium3.29E-04
24GO:0009062: fatty acid catabolic process3.29E-04
25GO:0010359: regulation of anion channel activity3.29E-04
26GO:0051176: positive regulation of sulfur metabolic process3.29E-04
27GO:0009814: defense response, incompatible interaction3.32E-04
28GO:0010227: floral organ abscission3.63E-04
29GO:0006612: protein targeting to membrane4.75E-04
30GO:0015696: ammonium transport4.75E-04
31GO:0046713: borate transport4.75E-04
32GO:0002229: defense response to oomycetes6.09E-04
33GO:0010193: response to ozone6.09E-04
34GO:0006891: intra-Golgi vesicle-mediated transport6.09E-04
35GO:0046345: abscisic acid catabolic process6.32E-04
36GO:0072488: ammonium transmembrane transport6.32E-04
37GO:0010363: regulation of plant-type hypersensitive response6.32E-04
38GO:2000038: regulation of stomatal complex development6.32E-04
39GO:0080142: regulation of salicylic acid biosynthetic process6.32E-04
40GO:0016032: viral process6.48E-04
41GO:0042742: defense response to bacterium6.77E-04
42GO:0032957: inositol trisphosphate metabolic process8.00E-04
43GO:0046855: inositol phosphate dephosphorylation9.77E-04
44GO:1900425: negative regulation of defense response to bacterium9.77E-04
45GO:0070370: cellular heat acclimation1.36E-03
46GO:0010099: regulation of photomorphogenesis1.79E-03
47GO:0010200: response to chitin1.79E-03
48GO:0010204: defense response signaling pathway, resistance gene-independent1.79E-03
49GO:0090333: regulation of stomatal closure2.02E-03
50GO:0000165: MAPK cascade2.16E-03
51GO:0009870: defense response signaling pathway, resistance gene-dependent2.51E-03
52GO:0006032: chitin catabolic process2.51E-03
53GO:0006468: protein phosphorylation2.53E-03
54GO:0009909: regulation of flower development2.66E-03
55GO:0046856: phosphatidylinositol dephosphorylation2.77E-03
56GO:0000272: polysaccharide catabolic process2.77E-03
57GO:0008361: regulation of cell size3.03E-03
58GO:0006890: retrograde vesicle-mediated transport, Golgi to ER3.03E-03
59GO:0009785: blue light signaling pathway3.31E-03
60GO:0009718: anthocyanin-containing compound biosynthetic process3.31E-03
61GO:0034605: cellular response to heat3.59E-03
62GO:0042343: indole glucosinolate metabolic process3.88E-03
63GO:0090351: seedling development3.88E-03
64GO:0070588: calcium ion transmembrane transport3.88E-03
65GO:0046854: phosphatidylinositol phosphorylation3.88E-03
66GO:0009863: salicylic acid mediated signaling pathway4.48E-03
67GO:0098542: defense response to other organism5.12E-03
68GO:0048278: vesicle docking5.12E-03
69GO:0003333: amino acid transmembrane transport5.12E-03
70GO:0016998: cell wall macromolecule catabolic process5.12E-03
71GO:0010017: red or far-red light signaling pathway5.45E-03
72GO:0016226: iron-sulfur cluster assembly5.45E-03
73GO:0009611: response to wounding5.96E-03
74GO:0042147: retrograde transport, endosome to Golgi6.48E-03
75GO:0007166: cell surface receptor signaling pathway6.68E-03
76GO:0042391: regulation of membrane potential6.83E-03
77GO:0000271: polysaccharide biosynthetic process6.83E-03
78GO:0045489: pectin biosynthetic process7.20E-03
79GO:0061025: membrane fusion7.57E-03
80GO:0006635: fatty acid beta-oxidation8.33E-03
81GO:0006970: response to osmotic stress9.75E-03
82GO:0051607: defense response to virus1.04E-02
83GO:0016579: protein deubiquitination1.04E-02
84GO:0009911: positive regulation of flower development1.08E-02
85GO:0001666: response to hypoxia1.08E-02
86GO:0009615: response to virus1.08E-02
87GO:0006906: vesicle fusion1.17E-02
88GO:0048573: photoperiodism, flowering1.21E-02
89GO:0044550: secondary metabolite biosynthetic process1.22E-02
90GO:0016049: cell growth1.26E-02
91GO:0008219: cell death1.30E-02
92GO:0006952: defense response1.34E-02
93GO:0009813: flavonoid biosynthetic process1.35E-02
94GO:0045892: negative regulation of transcription, DNA-templated1.37E-02
95GO:0006886: intracellular protein transport1.39E-02
96GO:0007568: aging1.44E-02
97GO:0009867: jasmonic acid mediated signaling pathway1.54E-02
98GO:0016051: carbohydrate biosynthetic process1.54E-02
99GO:0006839: mitochondrial transport1.69E-02
100GO:0006887: exocytosis1.74E-02
101GO:0009744: response to sucrose1.84E-02
102GO:0009640: photomorphogenesis1.84E-02
103GO:0009651: response to salt stress1.96E-02
104GO:0009409: response to cold2.08E-02
105GO:0009873: ethylene-activated signaling pathway2.15E-02
106GO:0042538: hyperosmotic salinity response2.16E-02
107GO:0010224: response to UV-B2.33E-02
108GO:0009620: response to fungus2.74E-02
109GO:0009624: response to nematode2.93E-02
110GO:0009742: brassinosteroid mediated signaling pathway3.05E-02
111GO:0009845: seed germination3.63E-02
112GO:0016036: cellular response to phosphate starvation4.11E-02
113GO:0007623: circadian rhythm4.32E-02
114GO:0010150: leaf senescence4.32E-02
115GO:0010228: vegetative to reproductive phase transition of meristem4.46E-02
116GO:0009617: response to bacterium4.89E-02
RankGO TermAdjusted P value
1GO:0004708: MAP kinase kinase activity4.22E-05
2GO:0016301: kinase activity4.89E-05
3GO:0004674: protein serine/threonine kinase activity5.36E-05
4GO:0008809: carnitine racemase activity8.25E-05
5GO:0090422: thiamine pyrophosphate transporter activity8.25E-05
6GO:0080042: ADP-glucose pyrophosphohydrolase activity8.25E-05
7GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity8.25E-05
8GO:0080041: ADP-ribose pyrophosphohydrolase activity1.97E-04
9GO:0017110: nucleoside-diphosphatase activity1.97E-04
10GO:0043424: protein histidine kinase binding2.75E-04
11GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity3.29E-04
12GO:0033897: ribonuclease T2 activity3.29E-04
13GO:0015189: L-lysine transmembrane transporter activity4.75E-04
14GO:0004445: inositol-polyphosphate 5-phosphatase activity4.75E-04
15GO:0015181: arginine transmembrane transporter activity4.75E-04
16GO:0004165: dodecenoyl-CoA delta-isomerase activity4.75E-04
17GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity4.75E-04
18GO:0005313: L-glutamate transmembrane transporter activity6.32E-04
19GO:0019199: transmembrane receptor protein kinase activity6.32E-04
20GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity7.76E-04
21GO:0045431: flavonol synthase activity8.00E-04
22GO:0010294: abscisic acid glucosyltransferase activity8.00E-04
23GO:0047631: ADP-ribose diphosphatase activity8.00E-04
24GO:0070696: transmembrane receptor protein serine/threonine kinase binding8.00E-04
25GO:0008375: acetylglucosaminyltransferase activity9.62E-04
26GO:0000210: NAD+ diphosphatase activity9.77E-04
27GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity9.77E-04
28GO:0008519: ammonium transmembrane transporter activity9.77E-04
29GO:0004714: transmembrane receptor protein tyrosine kinase activity1.57E-03
30GO:0004430: 1-phosphatidylinositol 4-kinase activity1.79E-03
31GO:0015174: basic amino acid transmembrane transporter activity2.26E-03
32GO:0004568: chitinase activity2.51E-03
33GO:0008047: enzyme activator activity2.51E-03
34GO:0008234: cysteine-type peptidase activity2.66E-03
35GO:0004521: endoribonuclease activity3.03E-03
36GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity3.03E-03
37GO:0005388: calcium-transporting ATPase activity3.31E-03
38GO:0030552: cAMP binding3.88E-03
39GO:0030553: cGMP binding3.88E-03
40GO:0008061: chitin binding3.88E-03
41GO:0005524: ATP binding4.55E-03
42GO:0005216: ion channel activity4.80E-03
43GO:0004540: ribonuclease activity5.12E-03
44GO:0033612: receptor serine/threonine kinase binding5.12E-03
45GO:0005515: protein binding5.32E-03
46GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity5.45E-03
47GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.45E-03
48GO:0030551: cyclic nucleotide binding6.83E-03
49GO:0005249: voltage-gated potassium channel activity6.83E-03
50GO:0003713: transcription coactivator activity7.20E-03
51GO:0004843: thiol-dependent ubiquitin-specific protease activity8.33E-03
52GO:0019825: oxygen binding9.08E-03
53GO:0043531: ADP binding9.93E-03
54GO:0005506: iron ion binding1.39E-02
55GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.46E-02
56GO:0000149: SNARE binding1.64E-02
57GO:0005484: SNAP receptor activity1.84E-02
58GO:0016757: transferase activity, transferring glycosyl groups2.00E-02
59GO:0051287: NAD binding2.11E-02
60GO:0015171: amino acid transmembrane transporter activity2.45E-02
61GO:0020037: heme binding2.52E-02
62GO:0080043: quercetin 3-O-glucosyltransferase activity2.74E-02
63GO:0080044: quercetin 7-O-glucosyltransferase activity2.74E-02
64GO:0015035: protein disulfide oxidoreductase activity2.99E-02
65GO:0016758: transferase activity, transferring hexosyl groups3.37E-02
66GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.50E-02
67GO:0043565: sequence-specific DNA binding3.65E-02
68GO:0008565: protein transporter activity3.90E-02
69GO:0005516: calmodulin binding4.43E-02
70GO:0008194: UDP-glycosyltransferase activity4.67E-02
RankGO TermAdjusted P value
1GO:0005901: caveola1.97E-04
2GO:0012505: endomembrane system3.69E-04
3GO:0005795: Golgi stack3.88E-03
4GO:0043234: protein complex4.18E-03
5GO:0005886: plasma membrane4.27E-03
6GO:0031201: SNARE complex1.74E-02
7GO:0043231: intracellular membrane-bounded organelle1.83E-02
8GO:0005887: integral component of plasma membrane2.26E-02
9GO:0010008: endosome membrane2.62E-02
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Gene type



Gene DE type