co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
7	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:0043972: histone H3-K23 acetylation	0.00E+00
10	GO:0006436: tryptophanyl-tRNA aminoacylation	1.77E-04
11	GO:0000066: mitochondrial ornithine transport	1.77E-04
12	GO:0034757: negative regulation of iron ion transport	1.77E-04
13	GO:0051171: regulation of nitrogen compound metabolic process	1.77E-04
14	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.77E-04
15	GO:0043971: histone H3-K18 acetylation	1.77E-04
16	GO:0048657: anther wall tapetum cell differentiation	1.77E-04
17	GO:0048255: mRNA stabilization	4.01E-04
18	GO:0006898: receptor-mediated endocytosis	4.01E-04
19	GO:0006435: threonyl-tRNA aminoacylation	4.01E-04
20	GO:0080005: photosystem stoichiometry adjustment	4.01E-04
21	GO:0010271: regulation of chlorophyll catabolic process	4.01E-04
22	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.01E-04
23	GO:0045493: xylan catabolic process	6.55E-04
24	GO:0006013: mannose metabolic process	6.55E-04
25	GO:0071705: nitrogen compound transport	6.55E-04
26	GO:0080117: secondary growth	6.55E-04
27	GO:0001578: microtubule bundle formation	6.55E-04
28	GO:0009102: biotin biosynthetic process	9.34E-04
29	GO:0009800: cinnamic acid biosynthetic process	9.34E-04
30	GO:0010306: rhamnogalacturonan II biosynthetic process	9.34E-04
31	GO:0010255: glucose mediated signaling pathway	9.34E-04
32	GO:0051322: anaphase	1.24E-03
33	GO:0071249: cellular response to nitrate	1.24E-03
34	GO:0007020: microtubule nucleation	1.24E-03
35	GO:0015846: polyamine transport	1.24E-03
36	GO:0048868: pollen tube development	1.35E-03
37	GO:0031365: N-terminal protein amino acid modification	1.57E-03
38	GO:0006465: signal peptide processing	1.57E-03
39	GO:0046785: microtubule polymerization	1.57E-03
40	GO:0048827: phyllome development	1.94E-03
41	GO:0010315: auxin efflux	1.94E-03
42	GO:0006559: L-phenylalanine catabolic process	1.94E-03
43	GO:0048831: regulation of shoot system development	1.94E-03
44	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.32E-03
45	GO:0034389: lipid particle organization	2.32E-03
46	GO:0048509: regulation of meristem development	2.32E-03
47	GO:0009911: positive regulation of flower development	2.38E-03
48	GO:0009610: response to symbiotic fungus	2.74E-03
49	GO:0048528: post-embryonic root development	2.74E-03
50	GO:0009451: RNA modification	2.92E-03
51	GO:0045010: actin nucleation	3.17E-03
52	GO:0000160: phosphorelay signal transduction system	3.25E-03
53	GO:0009834: plant-type secondary cell wall biogenesis	3.41E-03
54	GO:0006002: fructose 6-phosphate metabolic process	3.63E-03
55	GO:0022900: electron transport chain	3.63E-03
56	GO:0009827: plant-type cell wall modification	3.63E-03
57	GO:0044030: regulation of DNA methylation	3.63E-03
58	GO:0019432: triglyceride biosynthetic process	4.10E-03
59	GO:0000373: Group II intron splicing	4.10E-03
60	GO:0010380: regulation of chlorophyll biosynthetic process	4.60E-03
61	GO:0008202: steroid metabolic process	4.60E-03
62	GO:0006535: cysteine biosynthetic process from serine	5.11E-03
63	GO:0009416: response to light stimulus	5.37E-03
64	GO:0045037: protein import into chloroplast stroma	6.20E-03
65	GO:0015706: nitrate transport	6.20E-03
66	GO:0010229: inflorescence development	6.78E-03
67	GO:0030036: actin cytoskeleton organization	6.78E-03
68	GO:0009767: photosynthetic electron transport chain	6.78E-03
69	GO:0009736: cytokinin-activated signaling pathway	6.78E-03
70	GO:0046777: protein autophosphorylation	7.06E-03
71	GO:0010540: basipetal auxin transport	7.37E-03
72	GO:0080188: RNA-directed DNA methylation	7.98E-03
73	GO:0010167: response to nitrate	7.98E-03
74	GO:0006863: purine nucleobase transport	8.61E-03
75	GO:0006071: glycerol metabolic process	8.61E-03
76	GO:0000162: tryptophan biosynthetic process	8.61E-03
77	GO:0019344: cysteine biosynthetic process	9.26E-03
78	GO:0010187: negative regulation of seed germination	9.26E-03
79	GO:0006289: nucleotide-excision repair	9.26E-03
80	GO:0010073: meristem maintenance	9.92E-03
81	GO:0006825: copper ion transport	9.92E-03
82	GO:0006418: tRNA aminoacylation for protein translation	9.92E-03
83	GO:0043622: cortical microtubule organization	9.92E-03
84	GO:0035428: hexose transmembrane transport	1.13E-02
85	GO:0016226: iron-sulfur cluster assembly	1.13E-02
86	GO:0009693: ethylene biosynthetic process	1.20E-02
87	GO:0071215: cellular response to abscisic acid stimulus	1.20E-02
88	GO:0010584: pollen exine formation	1.27E-02
89	GO:0070417: cellular response to cold	1.35E-02
90	GO:0010087: phloem or xylem histogenesis	1.43E-02
91	GO:0046323: glucose import	1.50E-02
92	GO:0010268: brassinosteroid homeostasis	1.50E-02
93	GO:0045489: pectin biosynthetic process	1.50E-02
94	GO:0006633: fatty acid biosynthetic process	1.52E-02
95	GO:0009851: auxin biosynthetic process	1.66E-02
96	GO:0048825: cotyledon development	1.66E-02
97	GO:0016132: brassinosteroid biosynthetic process	1.75E-02
98	GO:0007264: small GTPase mediated signal transduction	1.83E-02
99	GO:0010090: trichome morphogenesis	1.91E-02
100	GO:0016125: sterol metabolic process	2.00E-02
101	GO:0010468: regulation of gene expression	2.00E-02
102	GO:0000910: cytokinesis	2.18E-02
103	GO:0016126: sterol biosynthetic process	2.27E-02
104	GO:0010029: regulation of seed germination	2.36E-02
105	GO:0009826: unidimensional cell growth	2.50E-02
106	GO:0010411: xyloglucan metabolic process	2.55E-02
107	GO:0008219: cell death	2.74E-02
108	GO:0048481: plant ovule development	2.74E-02
109	GO:0030244: cellulose biosynthetic process	2.74E-02
110	GO:0006508: proteolysis	2.98E-02
111	GO:0007568: aging	3.04E-02
112	GO:0009910: negative regulation of flower development	3.04E-02
113	GO:0006839: mitochondrial transport	3.56E-02
114	GO:0051707: response to other organism	3.88E-02
115	GO:0008283: cell proliferation	3.88E-02
116	GO:0009636: response to toxic substance	4.22E-02
117	GO:0051603: proteolysis involved in cellular protein catabolic process	4.92E-02
118	GO:0010224: response to UV-B	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
2	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0017091: AU-rich element binding	1.77E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.77E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.77E-04
10	GO:0005290: L-histidine transmembrane transporter activity	1.77E-04
11	GO:0004008: copper-exporting ATPase activity	1.77E-04
12	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.77E-04
13	GO:0004830: tryptophan-tRNA ligase activity	1.77E-04
14	GO:0004047: aminomethyltransferase activity	4.01E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	4.01E-04
16	GO:0009884: cytokinin receptor activity	4.01E-04
17	GO:0004829: threonine-tRNA ligase activity	4.01E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	4.01E-04
19	GO:0005034: osmosensor activity	6.55E-04
20	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	6.55E-04
21	GO:0045548: phenylalanine ammonia-lyase activity	6.55E-04
22	GO:0032549: ribonucleoside binding	6.55E-04
23	GO:0016805: dipeptidase activity	6.55E-04
24	GO:0015189: L-lysine transmembrane transporter activity	9.34E-04
25	GO:0000254: C-4 methylsterol oxidase activity	9.34E-04
26	GO:0015181: arginine transmembrane transporter activity	9.34E-04
27	GO:0046556: alpha-L-arabinofuranosidase activity	1.24E-03
28	GO:0010385: double-stranded methylated DNA binding	1.24E-03
29	GO:0070628: proteasome binding	1.24E-03
30	GO:0009044: xylan 1,4-beta-xylosidase activity	1.24E-03
31	GO:0005471: ATP:ADP antiporter activity	1.57E-03
32	GO:0031593: polyubiquitin binding	1.94E-03
33	GO:0019900: kinase binding	2.32E-03
34	GO:0004559: alpha-mannosidase activity	2.32E-03
35	GO:0004124: cysteine synthase activity	2.32E-03
36	GO:0009927: histidine phosphotransfer kinase activity	2.32E-03
37	GO:0004144: diacylglycerol O-acyltransferase activity	2.32E-03
38	GO:0008235: metalloexopeptidase activity	2.74E-03
39	GO:0003872: 6-phosphofructokinase activity	2.74E-03
40	GO:0019899: enzyme binding	2.74E-03
41	GO:0008142: oxysterol binding	3.63E-03
42	GO:0005375: copper ion transmembrane transporter activity	3.63E-03
43	GO:0015020: glucuronosyltransferase activity	5.11E-03
44	GO:0004673: protein histidine kinase activity	5.11E-03
45	GO:0001054: RNA polymerase I activity	5.65E-03
46	GO:0004177: aminopeptidase activity	5.65E-03
47	GO:0008327: methyl-CpG binding	5.65E-03
48	GO:0000155: phosphorelay sensor kinase activity	6.78E-03
49	GO:0009982: pseudouridine synthase activity	6.78E-03
50	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.78E-03
51	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.61E-03
52	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.61E-03
53	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.61E-03
54	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.82E-03
55	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.82E-03
56	GO:0043130: ubiquitin binding	9.26E-03
57	GO:0043424: protein histidine kinase binding	9.92E-03
58	GO:0005345: purine nucleobase transmembrane transporter activity	9.92E-03
59	GO:0004176: ATP-dependent peptidase activity	1.06E-02
60	GO:0003924: GTPase activity	1.06E-02
61	GO:0004812: aminoacyl-tRNA ligase activity	1.35E-02
62	GO:0030170: pyridoxal phosphate binding	1.35E-02
63	GO:0004402: histone acetyltransferase activity	1.43E-02
64	GO:0001085: RNA polymerase II transcription factor binding	1.50E-02
65	GO:0010181: FMN binding	1.58E-02
66	GO:0005355: glucose transmembrane transporter activity	1.58E-02
67	GO:0019901: protein kinase binding	1.66E-02
68	GO:0003676: nucleic acid binding	1.83E-02
69	GO:0008194: UDP-glycosyltransferase activity	1.88E-02
70	GO:0000156: phosphorelay response regulator activity	1.91E-02
71	GO:0003684: damaged DNA binding	2.00E-02
72	GO:0008483: transaminase activity	2.09E-02
73	GO:0008237: metallopeptidase activity	2.09E-02
74	GO:0042802: identical protein binding	2.13E-02
75	GO:0016413: O-acetyltransferase activity	2.18E-02
76	GO:0004806: triglyceride lipase activity	2.55E-02
77	GO:0004721: phosphoprotein phosphatase activity	2.55E-02
78	GO:0004222: metalloendopeptidase activity	2.94E-02
79	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.94E-02
80	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.04E-02
81	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.11E-02
82	GO:0042393: histone binding	3.56E-02
83	GO:0004185: serine-type carboxypeptidase activity	3.88E-02
84	GO:0042803: protein homodimerization activity	4.03E-02
85	GO:0004871: signal transducer activity	4.03E-02
86	GO:0005525: GTP binding	4.08E-02
87	GO:0051537: 2 iron, 2 sulfur cluster binding	4.11E-02
88	GO:0043621: protein self-association	4.11E-02
89	GO:0035091: phosphatidylinositol binding	4.11E-02
90	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010370: perinucleolar chromocenter	1.77E-04
3	GO:0009507: chloroplast	9.95E-04
4	GO:0072686: mitotic spindle	1.57E-03
5	GO:0005945: 6-phosphofructokinase complex	1.57E-03
6	GO:0031209: SCAR complex	1.94E-03
7	GO:0010005: cortical microtubule, transverse to long axis	2.32E-03
8	GO:0031982: vesicle	3.17E-03
9	GO:0005811: lipid particle	3.63E-03
10	GO:0005720: nuclear heterochromatin	4.10E-03
11	GO:0005736: DNA-directed RNA polymerase I complex	4.10E-03
12	GO:0055028: cortical microtubule	5.11E-03
13	GO:0009505: plant-type cell wall	6.41E-03
14	GO:0005938: cell cortex	6.78E-03
15	GO:0016602: CCAAT-binding factor complex	6.78E-03
16	GO:0009574: preprophase band	6.78E-03
17	GO:0009532: plastid stroma	1.06E-02
18	GO:0005770: late endosome	1.50E-02
19	GO:0009570: chloroplast stroma	1.76E-02
20	GO:0030529: intracellular ribonucleoprotein complex	2.27E-02
21	GO:0005667: transcription factor complex	2.45E-02
22	GO:0005789: endoplasmic reticulum membrane	2.93E-02
23	GO:0005819: spindle	3.45E-02
24	GO:0005802: trans-Golgi network	3.95E-02
25	GO:0005856: cytoskeleton	4.22E-02
26	GO:0005768: endosome	4.63E-02