co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
3	GO:0005993: trehalose catabolic process	0.00E+00
4	GO:0046865: terpenoid transport	0.00E+00
5	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
6	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.48E-05
7	GO:0032469: endoplasmic reticulum calcium ion homeostasis	1.30E-04
8	GO:0034975: protein folding in endoplasmic reticulum	1.30E-04
9	GO:0000077: DNA damage checkpoint	1.30E-04
10	GO:1990641: response to iron ion starvation	1.30E-04
11	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.30E-04
12	GO:0015012: heparan sulfate proteoglycan biosynthetic process	2.99E-04
13	GO:0080183: response to photooxidative stress	2.99E-04
14	GO:0010155: regulation of proton transport	2.99E-04
15	GO:0006024: glycosaminoglycan biosynthetic process	2.99E-04
16	GO:0040020: regulation of meiotic nuclear division	2.99E-04
17	GO:0006101: citrate metabolic process	2.99E-04
18	GO:0043066: negative regulation of apoptotic process	2.99E-04
19	GO:0009863: salicylic acid mediated signaling pathway	4.55E-04
20	GO:0006065: UDP-glucuronate biosynthetic process	4.92E-04
21	GO:0015783: GDP-fucose transport	4.92E-04
22	GO:0009410: response to xenobiotic stimulus	4.92E-04
23	GO:0015692: lead ion transport	4.92E-04
24	GO:0052546: cell wall pectin metabolic process	4.92E-04
25	GO:0080163: regulation of protein serine/threonine phosphatase activity	4.92E-04
26	GO:0080168: abscisic acid transport	4.92E-04
27	GO:0055070: copper ion homeostasis	7.04E-04
28	GO:0045088: regulation of innate immune response	9.34E-04
29	GO:0006625: protein targeting to peroxisome	9.34E-04
30	GO:0006097: glyoxylate cycle	1.18E-03
31	GO:0009229: thiamine diphosphate biosynthetic process	1.18E-03
32	GO:0009247: glycolipid biosynthetic process	1.18E-03
33	GO:0009228: thiamine biosynthetic process	1.45E-03
34	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.73E-03
35	GO:0031930: mitochondria-nucleus signaling pathway	1.73E-03
36	GO:0010044: response to aluminum ion	2.04E-03
37	GO:0046470: phosphatidylcholine metabolic process	2.04E-03
38	GO:0019375: galactolipid biosynthetic process	2.36E-03
39	GO:0031540: regulation of anthocyanin biosynthetic process	2.36E-03
40	GO:0006102: isocitrate metabolic process	2.36E-03
41	GO:1900150: regulation of defense response to fungus	2.36E-03
42	GO:0009850: auxin metabolic process	2.36E-03
43	GO:0009738: abscisic acid-activated signaling pathway	2.61E-03
44	GO:0010112: regulation of systemic acquired resistance	3.04E-03
45	GO:0015780: nucleotide-sugar transport	3.04E-03
46	GO:0007338: single fertilization	3.04E-03
47	GO:0010332: response to gamma radiation	3.04E-03
48	GO:0008202: steroid metabolic process	3.41E-03
49	GO:0009086: methionine biosynthetic process	3.41E-03
50	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.41E-03
51	GO:0043069: negative regulation of programmed cell death	3.79E-03
52	GO:0042538: hyperosmotic salinity response	4.08E-03
53	GO:0000038: very long-chain fatty acid metabolic process	4.18E-03
54	GO:0019684: photosynthesis, light reaction	4.18E-03
55	GO:0009089: lysine biosynthetic process via diaminopimelate	4.18E-03
56	GO:0045037: protein import into chloroplast stroma	4.58E-03
57	GO:0006626: protein targeting to mitochondrion	5.00E-03
58	GO:0018107: peptidyl-threonine phosphorylation	5.00E-03
59	GO:0007034: vacuolar transport	5.44E-03
60	GO:0070588: calcium ion transmembrane transport	5.88E-03
61	GO:0007030: Golgi organization	5.88E-03
62	GO:0000162: tryptophan biosynthetic process	6.34E-03
63	GO:0018105: peptidyl-serine phosphorylation	6.40E-03
64	GO:0006289: nucleotide-excision repair	6.81E-03
65	GO:0000027: ribosomal large subunit assembly	6.81E-03
66	GO:0045333: cellular respiration	6.81E-03
67	GO:0080147: root hair cell development	6.81E-03
68	GO:0006334: nucleosome assembly	7.79E-03
69	GO:0048278: vesicle docking	7.79E-03
70	GO:0071456: cellular response to hypoxia	8.30E-03
71	GO:0009814: defense response, incompatible interaction	8.30E-03
72	GO:0009306: protein secretion	9.35E-03
73	GO:0006351: transcription, DNA-templated	9.80E-03
74	GO:0010150: leaf senescence	1.08E-02
75	GO:0061025: membrane fusion	1.16E-02
76	GO:0006470: protein dephosphorylation	1.23E-02
77	GO:0071554: cell wall organization or biogenesis	1.28E-02
78	GO:0002229: defense response to oomycetes	1.28E-02
79	GO:0010193: response to ozone	1.28E-02
80	GO:0008380: RNA splicing	1.29E-02
81	GO:0032502: developmental process	1.34E-02
82	GO:0035556: intracellular signal transduction	1.35E-02
83	GO:0006464: cellular protein modification process	1.46E-02
84	GO:0009567: double fertilization forming a zygote and endosperm	1.46E-02
85	GO:0055085: transmembrane transport	1.70E-02
86	GO:0006906: vesicle fusion	1.79E-02
87	GO:0009723: response to ethylene	1.93E-02
88	GO:0010200: response to chitin	2.14E-02
89	GO:0046777: protein autophosphorylation	2.22E-02
90	GO:0000724: double-strand break repair via homologous recombination	2.29E-02
91	GO:0009637: response to blue light	2.37E-02
92	GO:0045087: innate immune response	2.37E-02
93	GO:0006099: tricarboxylic acid cycle	2.45E-02
94	GO:0008643: carbohydrate transport	3.00E-02
95	GO:0009751: response to salicylic acid	3.02E-02
96	GO:0042742: defense response to bacterium	3.06E-02
97	GO:0006855: drug transmembrane transport	3.17E-02
98	GO:0009753: response to jasmonic acid	3.28E-02
99	GO:0006486: protein glycosylation	3.51E-02
100	GO:0010224: response to UV-B	3.60E-02
101	GO:0006857: oligopeptide transport	3.68E-02
102	GO:0006396: RNA processing	4.60E-02
103	GO:0000398: mRNA splicing, via spliceosome	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
2	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
3	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
4	GO:0050334: thiaminase activity	0.00E+00
5	GO:0004656: procollagen-proline 4-dioxygenase activity	4.86E-05
6	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.30E-04
7	GO:0046481: digalactosyldiacylglycerol synthase activity	1.30E-04
8	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.30E-04
9	GO:0015927: trehalase activity	1.30E-04
10	GO:0015036: disulfide oxidoreductase activity	2.99E-04
11	GO:0003994: aconitate hydratase activity	2.99E-04
12	GO:0032934: sterol binding	2.99E-04
13	GO:0031418: L-ascorbic acid binding	4.55E-04
14	GO:0005457: GDP-fucose transmembrane transporter activity	4.92E-04
15	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.92E-04
16	GO:0010178: IAA-amino acid conjugate hydrolase activity	7.04E-04
17	GO:0035250: UDP-galactosyltransferase activity	7.04E-04
18	GO:0009916: alternative oxidase activity	9.34E-04
19	GO:0004834: tryptophan synthase activity	9.34E-04
20	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.54E-03
21	GO:0008142: oxysterol binding	2.69E-03
22	GO:0004630: phospholipase D activity	2.69E-03
23	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.69E-03
24	GO:0004864: protein phosphatase inhibitor activity	3.79E-03
25	GO:0043565: sequence-specific DNA binding	3.99E-03
26	GO:0015198: oligopeptide transporter activity	4.58E-03
27	GO:0005262: calcium channel activity	5.00E-03
28	GO:0005388: calcium-transporting ATPase activity	5.00E-03
29	GO:0046872: metal ion binding	5.76E-03
30	GO:0015035: protein disulfide oxidoreductase activity	6.40E-03
31	GO:0005509: calcium ion binding	7.08E-03
32	GO:0030170: pyridoxal phosphate binding	8.64E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.04E-03
34	GO:0003756: protein disulfide isomerase activity	9.35E-03
35	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.37E-02
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.40E-02
37	GO:0008483: transaminase activity	1.53E-02
38	GO:0008237: metallopeptidase activity	1.53E-02
39	GO:0016413: O-acetyltransferase activity	1.59E-02
40	GO:0016740: transferase activity	1.62E-02
41	GO:0003682: chromatin binding	1.77E-02
42	GO:0008375: acetylglucosaminyltransferase activity	1.79E-02
43	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.79E-02
44	GO:0004683: calmodulin-dependent protein kinase activity	1.86E-02
45	GO:0004806: triglyceride lipase activity	1.86E-02
46	GO:0000149: SNARE binding	2.52E-02
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.52E-02
48	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
49	GO:0004722: protein serine/threonine phosphatase activity	2.72E-02
50	GO:0005484: SNAP receptor activity	2.84E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	3.00E-02
52	GO:0004674: protein serine/threonine kinase activity	3.12E-02
53	GO:0051287: NAD binding	3.25E-02
54	GO:0005515: protein binding	4.11E-02
55	GO:0016874: ligase activity	4.32E-02
56	GO:0022857: transmembrane transporter activity	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	2.09E-04
2	GO:0005789: endoplasmic reticulum membrane	2.74E-04
3	GO:0031314: extrinsic component of mitochondrial inner membrane	2.99E-04
4	GO:0005782: peroxisomal matrix	4.92E-04
5	GO:0009898: cytoplasmic side of plasma membrane	9.34E-04
6	GO:0000164: protein phosphatase type 1 complex	1.18E-03
7	GO:0005783: endoplasmic reticulum	2.74E-03
8	GO:0005743: mitochondrial inner membrane	5.54E-03
9	GO:0005795: Golgi stack	5.88E-03
10	GO:0030176: integral component of endoplasmic reticulum membrane	5.88E-03
11	GO:0005758: mitochondrial intermembrane space	6.81E-03
12	GO:0070469: respiratory chain	7.30E-03
13	GO:0009543: chloroplast thylakoid lumen	7.79E-03
14	GO:0009707: chloroplast outer membrane	2.00E-02
15	GO:0022625: cytosolic large ribosomal subunit	2.18E-02
16	GO:0015934: large ribosomal subunit	2.22E-02
17	GO:0000325: plant-type vacuole	2.22E-02
18	GO:0005794: Golgi apparatus	2.42E-02
19	GO:0031201: SNARE complex	2.68E-02
20	GO:0043231: intracellular membrane-bounded organelle	3.37E-02
21	GO:0005635: nuclear envelope	3.68E-02
22	GO:0005681: spliceosomal complex	3.95E-02
23	GO:0016607: nuclear speck	4.04E-02
24	GO:0000139: Golgi membrane	4.44E-02
25	GO:0009706: chloroplast inner membrane	4.51E-02