GO Enrichment Analysis of Co-expressed Genes with
AT2G40840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015995: chlorophyll biosynthetic process | 2.39E-09 |
| 2 | GO:0015979: photosynthesis | 4.76E-07 |
| 3 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 7.07E-07 |
| 4 | GO:0006000: fructose metabolic process | 2.67E-06 |
| 5 | GO:0055114: oxidation-reduction process | 9.38E-06 |
| 6 | GO:0010196: nonphotochemical quenching | 5.63E-05 |
| 7 | GO:0006002: fructose 6-phosphate metabolic process | 9.23E-05 |
| 8 | GO:0005980: glycogen catabolic process | 1.18E-04 |
| 9 | GO:0009090: homoserine biosynthetic process | 1.18E-04 |
| 10 | GO:0032259: methylation | 1.40E-04 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 1.91E-04 |
| 12 | GO:0005983: starch catabolic process | 2.21E-04 |
| 13 | GO:0006094: gluconeogenesis | 2.53E-04 |
| 14 | GO:0005986: sucrose biosynthetic process | 2.53E-04 |
| 15 | GO:0015804: neutral amino acid transport | 2.73E-04 |
| 16 | GO:0010353: response to trehalose | 2.73E-04 |
| 17 | GO:0010207: photosystem II assembly | 2.87E-04 |
| 18 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.60E-04 |
| 19 | GO:0090391: granum assembly | 4.52E-04 |
| 20 | GO:0006518: peptide metabolic process | 4.52E-04 |
| 21 | GO:0009067: aspartate family amino acid biosynthetic process | 6.47E-04 |
| 22 | GO:1902358: sulfate transmembrane transport | 6.47E-04 |
| 23 | GO:0006021: inositol biosynthetic process | 8.60E-04 |
| 24 | GO:0010021: amylopectin biosynthetic process | 8.60E-04 |
| 25 | GO:0016123: xanthophyll biosynthetic process | 1.08E-03 |
| 26 | GO:0016120: carotene biosynthetic process | 1.08E-03 |
| 27 | GO:0006656: phosphatidylcholine biosynthetic process | 1.08E-03 |
| 28 | GO:0006633: fatty acid biosynthetic process | 1.23E-03 |
| 29 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.33E-03 |
| 30 | GO:0042549: photosystem II stabilization | 1.33E-03 |
| 31 | GO:1902456: regulation of stomatal opening | 1.33E-03 |
| 32 | GO:0010189: vitamin E biosynthetic process | 1.59E-03 |
| 33 | GO:0009088: threonine biosynthetic process | 1.59E-03 |
| 34 | GO:0016311: dephosphorylation | 1.68E-03 |
| 35 | GO:0009610: response to symbiotic fungus | 1.87E-03 |
| 36 | GO:0009772: photosynthetic electron transport in photosystem II | 1.87E-03 |
| 37 | GO:0008272: sulfate transport | 1.87E-03 |
| 38 | GO:0009631: cold acclimation | 2.04E-03 |
| 39 | GO:0019827: stem cell population maintenance | 2.16E-03 |
| 40 | GO:0005978: glycogen biosynthetic process | 2.16E-03 |
| 41 | GO:0030091: protein repair | 2.16E-03 |
| 42 | GO:0015996: chlorophyll catabolic process | 2.46E-03 |
| 43 | GO:0010206: photosystem II repair | 2.78E-03 |
| 44 | GO:0006754: ATP biosynthetic process | 2.78E-03 |
| 45 | GO:0005982: starch metabolic process | 3.12E-03 |
| 46 | GO:0010205: photoinhibition | 3.12E-03 |
| 47 | GO:0009086: methionine biosynthetic process | 3.12E-03 |
| 48 | GO:0009641: shade avoidance | 3.46E-03 |
| 49 | GO:0009688: abscisic acid biosynthetic process | 3.46E-03 |
| 50 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.82E-03 |
| 51 | GO:0009750: response to fructose | 3.82E-03 |
| 52 | GO:0018107: peptidyl-threonine phosphorylation | 4.57E-03 |
| 53 | GO:0009725: response to hormone | 4.57E-03 |
| 54 | GO:0009266: response to temperature stimulus | 4.97E-03 |
| 55 | GO:0010143: cutin biosynthetic process | 4.97E-03 |
| 56 | GO:0019253: reductive pentose-phosphate cycle | 4.97E-03 |
| 57 | GO:0010223: secondary shoot formation | 4.97E-03 |
| 58 | GO:0005985: sucrose metabolic process | 5.37E-03 |
| 59 | GO:0010025: wax biosynthetic process | 5.79E-03 |
| 60 | GO:0061077: chaperone-mediated protein folding | 7.11E-03 |
| 61 | GO:0003333: amino acid transmembrane transport | 7.11E-03 |
| 62 | GO:0019748: secondary metabolic process | 7.57E-03 |
| 63 | GO:0016117: carotenoid biosynthetic process | 9.02E-03 |
| 64 | GO:0070417: cellular response to cold | 9.02E-03 |
| 65 | GO:0006606: protein import into nucleus | 9.53E-03 |
| 66 | GO:0000413: protein peptidyl-prolyl isomerization | 9.53E-03 |
| 67 | GO:0009741: response to brassinosteroid | 1.00E-02 |
| 68 | GO:0010182: sugar mediated signaling pathway | 1.00E-02 |
| 69 | GO:0015986: ATP synthesis coupled proton transport | 1.06E-02 |
| 70 | GO:0019252: starch biosynthetic process | 1.11E-02 |
| 71 | GO:0008654: phospholipid biosynthetic process | 1.11E-02 |
| 72 | GO:0006810: transport | 1.17E-02 |
| 73 | GO:0010027: thylakoid membrane organization | 1.51E-02 |
| 74 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.57E-02 |
| 75 | GO:0000160: phosphorelay signal transduction system | 1.89E-02 |
| 76 | GO:0009813: flavonoid biosynthetic process | 1.89E-02 |
| 77 | GO:0010311: lateral root formation | 1.89E-02 |
| 78 | GO:0044550: secondary metabolite biosynthetic process | 1.98E-02 |
| 79 | GO:0007568: aging | 2.02E-02 |
| 80 | GO:0006865: amino acid transport | 2.09E-02 |
| 81 | GO:0045454: cell redox homeostasis | 2.18E-02 |
| 82 | GO:0006631: fatty acid metabolic process | 2.44E-02 |
| 83 | GO:0009414: response to water deprivation | 2.52E-02 |
| 84 | GO:0009744: response to sucrose | 2.59E-02 |
| 85 | GO:0051707: response to other organism | 2.59E-02 |
| 86 | GO:0010114: response to red light | 2.59E-02 |
| 87 | GO:0006979: response to oxidative stress | 2.62E-02 |
| 88 | GO:0006629: lipid metabolic process | 2.68E-02 |
| 89 | GO:0006812: cation transport | 3.04E-02 |
| 90 | GO:0006364: rRNA processing | 3.20E-02 |
| 91 | GO:0009736: cytokinin-activated signaling pathway | 3.20E-02 |
| 92 | GO:0010224: response to UV-B | 3.28E-02 |
| 93 | GO:0009409: response to cold | 3.78E-02 |
| 94 | GO:0018105: peptidyl-serine phosphorylation | 4.19E-02 |
| 95 | GO:0009735: response to cytokinin | 4.34E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 3 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 4 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
| 5 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 6 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 7 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 8 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 9 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 7.07E-07 |
| 10 | GO:0035671: enone reductase activity | 1.18E-04 |
| 11 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.18E-04 |
| 12 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.18E-04 |
| 13 | GO:0050521: alpha-glucan, water dikinase activity | 1.18E-04 |
| 14 | GO:0008184: glycogen phosphorylase activity | 1.18E-04 |
| 15 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.18E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 1.18E-04 |
| 17 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 1.18E-04 |
| 18 | GO:0004645: phosphorylase activity | 1.18E-04 |
| 19 | GO:0034256: chlorophyll(ide) b reductase activity | 1.18E-04 |
| 20 | GO:0045486: naringenin 3-dioxygenase activity | 1.18E-04 |
| 21 | GO:0042389: omega-3 fatty acid desaturase activity | 2.73E-04 |
| 22 | GO:0004412: homoserine dehydrogenase activity | 2.73E-04 |
| 23 | GO:0004512: inositol-3-phosphate synthase activity | 2.73E-04 |
| 24 | GO:0018708: thiol S-methyltransferase activity | 2.73E-04 |
| 25 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.73E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 2.73E-04 |
| 27 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 2.73E-04 |
| 28 | GO:0015172: acidic amino acid transmembrane transporter activity | 2.73E-04 |
| 29 | GO:0008168: methyltransferase activity | 3.54E-04 |
| 30 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 4.52E-04 |
| 31 | GO:0043169: cation binding | 4.52E-04 |
| 32 | GO:0016491: oxidoreductase activity | 6.34E-04 |
| 33 | GO:0004072: aspartate kinase activity | 6.47E-04 |
| 34 | GO:0019201: nucleotide kinase activity | 6.47E-04 |
| 35 | GO:0015175: neutral amino acid transmembrane transporter activity | 6.47E-04 |
| 36 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.47E-04 |
| 37 | GO:0016851: magnesium chelatase activity | 6.47E-04 |
| 38 | GO:0008200: ion channel inhibitor activity | 1.33E-03 |
| 39 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.59E-03 |
| 40 | GO:0102391: decanoate--CoA ligase activity | 1.59E-03 |
| 41 | GO:0004017: adenylate kinase activity | 1.59E-03 |
| 42 | GO:0004602: glutathione peroxidase activity | 1.59E-03 |
| 43 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.87E-03 |
| 44 | GO:0008271: secondary active sulfate transmembrane transporter activity | 2.46E-03 |
| 45 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.46E-03 |
| 46 | GO:0071949: FAD binding | 2.78E-03 |
| 47 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.09E-03 |
| 48 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 3.12E-03 |
| 49 | GO:0015293: symporter activity | 3.21E-03 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.33E-03 |
| 51 | GO:0030234: enzyme regulator activity | 3.46E-03 |
| 52 | GO:0044183: protein binding involved in protein folding | 3.82E-03 |
| 53 | GO:0047372: acylglycerol lipase activity | 3.82E-03 |
| 54 | GO:0015386: potassium:proton antiporter activity | 3.82E-03 |
| 55 | GO:0015116: sulfate transmembrane transporter activity | 4.19E-03 |
| 56 | GO:0004565: beta-galactosidase activity | 4.57E-03 |
| 57 | GO:0016787: hydrolase activity | 5.97E-03 |
| 58 | GO:0031418: L-ascorbic acid binding | 6.22E-03 |
| 59 | GO:0005528: FK506 binding | 6.22E-03 |
| 60 | GO:0015079: potassium ion transmembrane transporter activity | 6.66E-03 |
| 61 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.01E-03 |
| 62 | GO:0008536: Ran GTPase binding | 1.00E-02 |
| 63 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.00E-02 |
| 64 | GO:0004872: receptor activity | 1.11E-02 |
| 65 | GO:0048038: quinone binding | 1.16E-02 |
| 66 | GO:0000156: phosphorelay response regulator activity | 1.28E-02 |
| 67 | GO:0016597: amino acid binding | 1.45E-02 |
| 68 | GO:0004222: metalloendopeptidase activity | 1.96E-02 |
| 69 | GO:0003746: translation elongation factor activity | 2.16E-02 |
| 70 | GO:0003993: acid phosphatase activity | 2.23E-02 |
| 71 | GO:0050661: NADP binding | 2.37E-02 |
| 72 | GO:0004185: serine-type carboxypeptidase activity | 2.59E-02 |
| 73 | GO:0015171: amino acid transmembrane transporter activity | 3.44E-02 |
| 74 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.68E-02 |
| 75 | GO:0015035: protein disulfide oxidoreductase activity | 4.19E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009534: chloroplast thylakoid | 7.35E-30 |
| 2 | GO:0009507: chloroplast | 3.42E-26 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.31E-24 |
| 4 | GO:0009941: chloroplast envelope | 6.01E-16 |
| 5 | GO:0009579: thylakoid | 8.48E-08 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.79E-07 |
| 7 | GO:0031969: chloroplast membrane | 2.99E-07 |
| 8 | GO:0009570: chloroplast stroma | 1.08E-06 |
| 9 | GO:0031977: thylakoid lumen | 1.65E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.14E-04 |
| 11 | GO:0009515: granal stacked thylakoid | 1.18E-04 |
| 12 | GO:0031357: integral component of chloroplast inner membrane | 2.73E-04 |
| 13 | GO:0042651: thylakoid membrane | 4.41E-04 |
| 14 | GO:0010007: magnesium chelatase complex | 4.52E-04 |
| 15 | GO:0009509: chromoplast | 4.52E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 7.02E-04 |
| 17 | GO:0009544: chloroplast ATP synthase complex | 8.60E-04 |
| 18 | GO:0010287: plastoglobule | 8.68E-04 |
| 19 | GO:0010319: stromule | 1.22E-03 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.33E-03 |
| 21 | GO:0009501: amyloplast | 2.16E-03 |
| 22 | GO:0009538: photosystem I reaction center | 2.16E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 6.66E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.11E-02 |
| 25 | GO:0009707: chloroplast outer membrane | 1.82E-02 |
| 26 | GO:0016020: membrane | 4.90E-02 |