Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G40690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
2GO:0032206: positive regulation of telomere maintenance0.00E+00
3GO:0006907: pinocytosis0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0042794: rRNA transcription from plastid promoter0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
8GO:0042793: transcription from plastid promoter9.47E-05
9GO:0051013: microtubule severing2.41E-04
10GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic2.41E-04
11GO:0010583: response to cyclopentenone2.80E-04
12GO:0061062: regulation of nematode larval development5.34E-04
13GO:0001736: establishment of planar polarity5.34E-04
14GO:0043039: tRNA aminoacylation5.34E-04
15GO:0009825: multidimensional cell growth8.57E-04
16GO:0006518: peptide metabolic process8.68E-04
17GO:0042780: tRNA 3'-end processing8.68E-04
18GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic8.68E-04
19GO:0045910: negative regulation of DNA recombination8.68E-04
20GO:0009451: RNA modification9.34E-04
21GO:0009926: auxin polar transport1.09E-03
22GO:0051513: regulation of monopolar cell growth1.24E-03
23GO:0009102: biotin biosynthetic process1.24E-03
24GO:0007276: gamete generation1.24E-03
25GO:0006021: inositol biosynthetic process1.65E-03
26GO:0009956: radial pattern formation1.65E-03
27GO:0009734: auxin-activated signaling pathway1.81E-03
28GO:0009958: positive gravitropism2.06E-03
29GO:0010158: abaxial cell fate specification2.11E-03
30GO:0009624: response to nematode2.47E-03
31GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.55E-03
32GO:0016554: cytidine to uridine editing2.60E-03
33GO:0009942: longitudinal axis specification3.12E-03
34GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.12E-03
35GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.68E-03
36GO:0009610: response to symbiotic fungus3.68E-03
37GO:0010050: vegetative phase change3.68E-03
38GO:0006353: DNA-templated transcription, termination4.27E-03
39GO:0009850: auxin metabolic process4.27E-03
40GO:0010492: maintenance of shoot apical meristem identity4.27E-03
41GO:0000105: histidine biosynthetic process4.27E-03
42GO:0042255: ribosome assembly4.27E-03
43GO:0019430: removal of superoxide radicals4.89E-03
44GO:0032544: plastid translation4.89E-03
45GO:0007389: pattern specification process4.89E-03
46GO:0007186: G-protein coupled receptor signaling pathway4.89E-03
47GO:0009657: plastid organization4.89E-03
48GO:0009832: plant-type cell wall biogenesis5.01E-03
49GO:0046916: cellular transition metal ion homeostasis5.54E-03
50GO:0000373: Group II intron splicing5.54E-03
51GO:0048589: developmental growth5.54E-03
52GO:0000723: telomere maintenance6.21E-03
53GO:1900865: chloroplast RNA modification6.21E-03
54GO:0030001: metal ion transport6.89E-03
55GO:0048829: root cap development6.92E-03
56GO:0006298: mismatch repair6.92E-03
57GO:0010192: mucilage biosynthetic process6.92E-03
58GO:0006782: protoporphyrinogen IX biosynthetic process6.92E-03
59GO:0009089: lysine biosynthetic process via diaminopimelate7.65E-03
60GO:0016485: protein processing7.65E-03
61GO:0048765: root hair cell differentiation7.65E-03
62GO:0008285: negative regulation of cell proliferation7.65E-03
63GO:0045037: protein import into chloroplast stroma8.41E-03
64GO:0010582: floral meristem determinacy8.41E-03
65GO:0010152: pollen maturation8.41E-03
66GO:0006790: sulfur compound metabolic process8.41E-03
67GO:0005983: starch catabolic process8.41E-03
68GO:0009658: chloroplast organization8.61E-03
69GO:0009887: animal organ morphogenesis1.00E-02
70GO:0010540: basipetal auxin transport1.00E-02
71GO:0010020: chloroplast fission1.00E-02
72GO:0009933: meristem structural organization1.00E-02
73GO:0006364: rRNA processing1.05E-02
74GO:0046854: phosphatidylinositol phosphorylation1.09E-02
75GO:0080188: RNA-directed DNA methylation1.09E-02
76GO:0009733: response to auxin1.14E-02
77GO:0006863: purine nucleobase transport1.17E-02
78GO:0009833: plant-type primary cell wall biogenesis1.17E-02
79GO:0006468: protein phosphorylation1.18E-02
80GO:0006418: tRNA aminoacylation for protein translation1.35E-02
81GO:0006874: cellular calcium ion homeostasis1.35E-02
82GO:0043622: cortical microtubule organization1.35E-02
83GO:0009793: embryo development ending in seed dormancy1.42E-02
84GO:0003333: amino acid transmembrane transport1.45E-02
85GO:0006306: DNA methylation1.45E-02
86GO:0016226: iron-sulfur cluster assembly1.54E-02
87GO:0051726: regulation of cell cycle1.59E-02
88GO:0009686: gibberellin biosynthetic process1.64E-02
89GO:0010091: trichome branching1.74E-02
90GO:0042127: regulation of cell proliferation1.74E-02
91GO:0048443: stamen development1.74E-02
92GO:0000271: polysaccharide biosynthetic process1.95E-02
93GO:0000226: microtubule cytoskeleton organization1.95E-02
94GO:0010305: leaf vascular tissue pattern formation2.05E-02
95GO:0045489: pectin biosynthetic process2.05E-02
96GO:0031047: gene silencing by RNA2.50E-02
97GO:0032502: developmental process2.50E-02
98GO:0009639: response to red or far red light2.73E-02
99GO:0019760: glucosinolate metabolic process2.73E-02
100GO:0010252: auxin homeostasis2.73E-02
101GO:0000910: cytokinesis2.98E-02
102GO:0016126: sterol biosynthetic process3.10E-02
103GO:0010411: xyloglucan metabolic process3.48E-02
104GO:0015995: chlorophyll biosynthetic process3.48E-02
105GO:0030244: cellulose biosynthetic process3.75E-02
106GO:0009416: response to light stimulus3.80E-02
107GO:0010311: lateral root formation3.88E-02
108GO:0000160: phosphorelay signal transduction system3.88E-02
109GO:0006811: ion transport4.01E-02
110GO:0006865: amino acid transport4.29E-02
111GO:0016051: carbohydrate biosynthetic process4.43E-02
112GO:0007049: cell cycle4.48E-02
113GO:0006839: mitochondrial transport4.86E-02
RankGO TermAdjusted P value
1GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
2GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0004401: histidinol-phosphatase activity0.00E+00
5GO:0010011: auxin binding4.05E-05
6GO:0008568: microtubule-severing ATPase activity2.41E-04
7GO:0010347: L-galactose-1-phosphate phosphatase activity2.41E-04
8GO:0008836: diaminopimelate decarboxylase activity2.41E-04
9GO:0004831: tyrosine-tRNA ligase activity2.41E-04
10GO:0004519: endonuclease activity2.47E-04
11GO:0019156: isoamylase activity5.34E-04
12GO:0004047: aminomethyltransferase activity5.34E-04
13GO:0052832: inositol monophosphate 3-phosphatase activity5.34E-04
14GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.34E-04
15GO:0004109: coproporphyrinogen oxidase activity5.34E-04
16GO:0008805: carbon-monoxide oxygenase activity5.34E-04
17GO:0008934: inositol monophosphate 1-phosphatase activity5.34E-04
18GO:0052833: inositol monophosphate 4-phosphatase activity5.34E-04
19GO:0016707: gibberellin 3-beta-dioxygenase activity8.68E-04
20GO:0042781: 3'-tRNA processing endoribonuclease activity8.68E-04
21GO:0043047: single-stranded telomeric DNA binding1.24E-03
22GO:0004930: G-protein coupled receptor activity1.65E-03
23GO:0010328: auxin influx transmembrane transporter activity1.65E-03
24GO:0003723: RNA binding2.05E-03
25GO:0005471: ATP:ADP antiporter activity2.11E-03
26GO:0003779: actin binding2.37E-03
27GO:0019901: protein kinase binding2.37E-03
28GO:0004556: alpha-amylase activity2.60E-03
29GO:0030983: mismatched DNA binding2.60E-03
30GO:0004784: superoxide dismutase activity2.60E-03
31GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.12E-03
32GO:0042162: telomeric DNA binding3.68E-03
33GO:0046914: transition metal ion binding4.89E-03
34GO:0004222: metalloendopeptidase activity5.26E-03
35GO:0004672: protein kinase activity5.87E-03
36GO:0009672: auxin:proton symporter activity6.21E-03
37GO:0016301: kinase activity8.49E-03
38GO:0010329: auxin efflux transmembrane transporter activity9.20E-03
39GO:0005217: intracellular ligand-gated ion channel activity1.09E-02
40GO:0008061: chitin binding1.09E-02
41GO:0003690: double-stranded DNA binding1.09E-02
42GO:0004970: ionotropic glutamate receptor activity1.09E-02
43GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.17E-02
44GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.17E-02
45GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.17E-02
46GO:0008134: transcription factor binding1.26E-02
47GO:0005345: purine nucleobase transmembrane transporter activity1.35E-02
48GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.54E-02
49GO:0030570: pectate lyase activity1.64E-02
50GO:0016760: cellulose synthase (UDP-forming) activity1.64E-02
51GO:0003676: nucleic acid binding1.68E-02
52GO:0003727: single-stranded RNA binding1.74E-02
53GO:0004812: aminoacyl-tRNA ligase activity1.84E-02
54GO:0019843: rRNA binding1.88E-02
55GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.05E-02
56GO:0016762: xyloglucan:xyloglucosyl transferase activity2.38E-02
57GO:0000156: phosphorelay response regulator activity2.62E-02
58GO:0016759: cellulose synthase activity2.73E-02
59GO:0003684: damaged DNA binding2.73E-02
60GO:0008237: metallopeptidase activity2.85E-02
61GO:0008483: transaminase activity2.85E-02
62GO:0016798: hydrolase activity, acting on glycosyl bonds3.48E-02
63GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.01E-02
64GO:0003697: single-stranded DNA binding4.43E-02
65GO:0004712: protein serine/threonine/tyrosine kinase activity4.71E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0035452: extrinsic component of plastid membrane0.00E+00
3GO:0009507: chloroplast2.22E-04
4GO:0042644: chloroplast nucleoid3.27E-04
5GO:0005697: telomerase holoenzyme complex5.34E-04
6GO:0009569: chloroplast starch grain5.34E-04
7GO:0042646: plastid nucleoid1.24E-03
8GO:0009295: nucleoid3.26E-03
9GO:0009986: cell surface3.68E-03
10GO:0009707: chloroplast outer membrane4.77E-03
11GO:0000784: nuclear chromosome, telomeric region4.89E-03
12GO:0009570: chloroplast stroma7.84E-03
13GO:0016602: CCAAT-binding factor complex9.20E-03
14GO:0009508: plastid chromosome9.20E-03
15GO:0000419: DNA-directed RNA polymerase V complex1.17E-02
16GO:0016021: integral component of membrane2.48E-02
17GO:0005739: mitochondrion3.13E-02
18GO:0009536: plastid4.03E-02
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Gene type



Gene DE type