co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G40530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0061062: regulation of nematode larval development	2.65E-06
6	GO:0051013: microtubule severing	2.39E-04
7	GO:0045786: negative regulation of cell cycle	2.39E-04
8	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.39E-04
9	GO:0032958: inositol phosphate biosynthetic process	2.39E-04
10	GO:0010070: zygote asymmetric cell division	2.39E-04
11	GO:0007186: G-protein coupled receptor signaling pathway	2.67E-04
12	GO:0043039: tRNA aminoacylation	5.29E-04
13	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.29E-04
14	GO:0006650: glycerophospholipid metabolic process	5.29E-04
15	GO:0009825: multidimensional cell growth	8.45E-04
16	GO:0048575: short-day photoperiodism, flowering	8.60E-04
17	GO:0090506: axillary shoot meristem initiation	8.60E-04
18	GO:0034090: maintenance of meiotic sister chromatid cohesion	8.60E-04
19	GO:0006863: purine nucleobase transport	9.38E-04
20	GO:0006020: inositol metabolic process	1.23E-03
21	GO:0009686: gibberellin biosynthetic process	1.48E-03
22	GO:0009956: radial pattern formation	1.64E-03
23	GO:0009107: lipoate biosynthetic process	2.09E-03
24	GO:0009696: salicylic acid metabolic process	2.09E-03
25	GO:0009624: response to nematode	2.42E-03
26	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.57E-03
27	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.57E-03
28	GO:0003006: developmental process involved in reproduction	2.57E-03
29	GO:0010942: positive regulation of cell death	2.57E-03
30	GO:0010583: response to cyclopentenone	2.67E-03
31	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.09E-03
32	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.09E-03
33	GO:0009942: longitudinal axis specification	3.09E-03
34	GO:0009733: response to auxin	3.37E-03
35	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.64E-03
36	GO:0007050: cell cycle arrest	3.64E-03
37	GO:0042255: ribosome assembly	4.23E-03
38	GO:0006353: DNA-templated transcription, termination	4.23E-03
39	GO:0048364: root development	4.57E-03
40	GO:0009817: defense response to fungus, incompatible interaction	4.70E-03
41	GO:0009657: plastid organization	4.84E-03
42	GO:0007389: pattern specification process	4.84E-03
43	GO:0009832: plant-type cell wall biogenesis	4.94E-03
44	GO:0009056: catabolic process	5.48E-03
45	GO:0048507: meristem development	5.48E-03
46	GO:0000373: Group II intron splicing	5.48E-03
47	GO:0048589: developmental growth	5.48E-03
48	GO:0009739: response to gibberellin	5.60E-03
49	GO:0048829: root cap development	6.85E-03
50	GO:0009641: shade avoidance	6.85E-03
51	GO:0010192: mucilage biosynthetic process	6.85E-03
52	GO:0009734: auxin-activated signaling pathway	7.21E-03
53	GO:0008285: negative regulation of cell proliferation	7.58E-03
54	GO:0009750: response to fructose	7.58E-03
55	GO:0016485: protein processing	7.58E-03
56	GO:0009926: auxin polar transport	7.68E-03
57	GO:0042546: cell wall biogenesis	7.99E-03
58	GO:0005983: starch catabolic process	8.33E-03
59	GO:0010582: floral meristem determinacy	8.33E-03
60	GO:0010152: pollen maturation	8.33E-03
61	GO:0010540: basipetal auxin transport	9.92E-03
62	GO:0006302: double-strand break repair	9.92E-03
63	GO:0048768: root hair cell tip growth	9.92E-03
64	GO:0048467: gynoecium development	9.92E-03
65	GO:0010020: chloroplast fission	9.92E-03
66	GO:0009933: meristem structural organization	9.92E-03
67	GO:0010207: photosystem II assembly	9.92E-03
68	GO:0010223: secondary shoot formation	9.92E-03
69	GO:0048366: leaf development	1.04E-02
70	GO:0009969: xyloglucan biosynthetic process	1.07E-02
71	GO:0080188: RNA-directed DNA methylation	1.07E-02
72	GO:0009833: plant-type primary cell wall biogenesis	1.16E-02
73	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.16E-02
74	GO:0051301: cell division	1.17E-02
75	GO:0006418: tRNA aminoacylation for protein translation	1.34E-02
76	GO:0006874: cellular calcium ion homeostasis	1.34E-02
77	GO:0043622: cortical microtubule organization	1.34E-02
78	GO:0009740: gibberellic acid mediated signaling pathway	1.39E-02
79	GO:0006306: DNA methylation	1.43E-02
80	GO:0051321: meiotic cell cycle	1.43E-02
81	GO:0003333: amino acid transmembrane transport	1.43E-02
82	GO:0051726: regulation of cell cycle	1.57E-02
83	GO:0001944: vasculature development	1.62E-02
84	GO:0048443: stamen development	1.72E-02
85	GO:0010091: trichome branching	1.72E-02
86	GO:0048653: anther development	1.93E-02
87	GO:0000226: microtubule cytoskeleton organization	1.93E-02
88	GO:0000271: polysaccharide biosynthetic process	1.93E-02
89	GO:0010182: sugar mediated signaling pathway	2.03E-02
90	GO:0045489: pectin biosynthetic process	2.03E-02
91	GO:0010305: leaf vascular tissue pattern formation	2.03E-02
92	GO:0009749: response to glucose	2.25E-02
93	GO:0008654: phospholipid biosynthetic process	2.25E-02
94	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.36E-02
95	GO:0002229: defense response to oomycetes	2.36E-02
96	GO:0040008: regulation of growth	2.45E-02
97	GO:0032502: developmental process	2.47E-02
98	GO:0031047: gene silencing by RNA	2.47E-02
99	GO:1901657: glycosyl compound metabolic process	2.59E-02
100	GO:0010090: trichome morphogenesis	2.59E-02
101	GO:0009451: RNA modification	2.62E-02
102	GO:0019760: glucosinolate metabolic process	2.71E-02
103	GO:0010252: auxin homeostasis	2.71E-02
104	GO:0009639: response to red or far red light	2.71E-02
105	GO:0006464: cellular protein modification process	2.71E-02
106	GO:0009627: systemic acquired resistance	3.32E-02
107	GO:0010411: xyloglucan metabolic process	3.45E-02
108	GO:0030244: cellulose biosynthetic process	3.71E-02
109	GO:0009416: response to light stimulus	3.73E-02
110	GO:0009793: embryo development ending in seed dormancy	3.77E-02
111	GO:0000160: phosphorelay signal transduction system	3.84E-02
112	GO:0009658: chloroplast organization	3.96E-02
113	GO:0006811: ion transport	3.97E-02
114	GO:0016310: phosphorylation	4.15E-02
115	GO:0006865: amino acid transport	4.25E-02
116	GO:0016051: carbohydrate biosynthetic process	4.39E-02
117	GO:0007049: cell cycle	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.39E-04
2	GO:0000829: inositol heptakisphosphate kinase activity	2.39E-04
3	GO:0000828: inositol hexakisphosphate kinase activity	2.39E-04
4	GO:0004831: tyrosine-tRNA ligase activity	2.39E-04
5	GO:0008568: microtubule-severing ATPase activity	2.39E-04
6	GO:0010296: prenylcysteine methylesterase activity	5.29E-04
7	GO:0016415: octanoyltransferase activity	5.29E-04
8	GO:0008805: carbon-monoxide oxygenase activity	5.29E-04
9	GO:0019156: isoamylase activity	5.29E-04
10	GO:0017118: lipoyltransferase activity	5.29E-04
11	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.60E-04
12	GO:0005345: purine nucleobase transmembrane transporter activity	1.14E-03
13	GO:0080031: methyl salicylate esterase activity	1.23E-03
14	GO:0045544: gibberellin 20-oxidase activity	1.23E-03
15	GO:0010011: auxin binding	1.64E-03
16	GO:0010328: auxin influx transmembrane transporter activity	1.64E-03
17	GO:0004930: G-protein coupled receptor activity	1.64E-03
18	GO:0008374: O-acyltransferase activity	2.09E-03
19	GO:0080030: methyl indole-3-acetate esterase activity	2.57E-03
20	GO:0004709: MAP kinase kinase kinase activity	2.57E-03
21	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.57E-03
22	GO:0030332: cyclin binding	2.57E-03
23	GO:0004556: alpha-amylase activity	2.57E-03
24	GO:0004462: lactoylglutathione lyase activity	2.57E-03
25	GO:0004871: signal transducer activity	3.34E-03
26	GO:0009672: auxin:proton symporter activity	6.15E-03
27	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.50E-03
28	GO:0043621: protein self-association	8.31E-03
29	GO:0008378: galactosyltransferase activity	8.33E-03
30	GO:0010329: auxin efflux transmembrane transporter activity	9.11E-03
31	GO:0004535: poly(A)-specific ribonuclease activity	9.92E-03
32	GO:0005217: intracellular ligand-gated ion channel activity	1.07E-02
33	GO:0003712: transcription cofactor activity	1.07E-02
34	GO:0004970: ionotropic glutamate receptor activity	1.07E-02
35	GO:0008134: transcription factor binding	1.25E-02
36	GO:0008408: 3'-5' exonuclease activity	1.43E-02
37	GO:0004540: ribonuclease activity	1.43E-02
38	GO:0033612: receptor serine/threonine kinase binding	1.43E-02
39	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.53E-02
40	GO:0016760: cellulose synthase (UDP-forming) activity	1.62E-02
41	GO:0030570: pectate lyase activity	1.62E-02
42	GO:0003727: single-stranded RNA binding	1.72E-02
43	GO:0004812: aminoacyl-tRNA ligase activity	1.82E-02
44	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.03E-02
45	GO:0019901: protein kinase binding	2.25E-02
46	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.36E-02
47	GO:0043565: sequence-specific DNA binding	2.56E-02
48	GO:0000156: phosphorelay response regulator activity	2.59E-02
49	GO:0016759: cellulose synthase activity	2.71E-02
50	GO:0008237: metallopeptidase activity	2.83E-02
51	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.45E-02
52	GO:0102483: scopolin beta-glucosidase activity	3.45E-02
53	GO:0004721: phosphoprotein phosphatase activity	3.45E-02
54	GO:0016301: kinase activity	3.55E-02
55	GO:0008236: serine-type peptidase activity	3.58E-02
56	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.58E-02
57	GO:0005096: GTPase activator activity	3.84E-02
58	GO:0004222: metalloendopeptidase activity	3.97E-02
59	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.97E-02
60	GO:0030145: manganese ion binding	4.11E-02
61	GO:0008422: beta-glucosidase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0031224: intrinsic component of membrane	0.00E+00
4	GO:0000791: euchromatin	2.39E-04
5	GO:0009569: chloroplast starch grain	5.29E-04
6	GO:0030870: Mre11 complex	5.29E-04
7	GO:0009531: secondary cell wall	1.23E-03
8	GO:0000795: synaptonemal complex	2.09E-03
9	GO:0009508: plastid chromosome	9.11E-03
10	GO:0000419: DNA-directed RNA polymerase V complex	1.16E-02
11	GO:0005875: microtubule associated complex	1.16E-02
12	GO:0009570: chloroplast stroma	1.83E-02
13	GO:0009507: chloroplast	2.10E-02
14	GO:0009504: cell plate	2.25E-02
15	GO:0016592: mediator complex	2.47E-02
16	GO:0000785: chromatin	2.47E-02
17	GO:0010319: stromule	2.83E-02
18	GO:0009295: nucleoid	2.83E-02
19	GO:0046658: anchored component of plasma membrane	3.39E-02
20	GO:0009707: chloroplast outer membrane	3.71E-02
21	GO:0031977: thylakoid lumen	4.95E-02