GO Enrichment Analysis of Co-expressed Genes with
AT2G40400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 2 | GO:0009661: chromoplast organization | 0.00E+00 |
| 3 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 4 | GO:0000025: maltose catabolic process | 1.42E-04 |
| 5 | GO:0005980: glycogen catabolic process | 1.42E-04 |
| 6 | GO:0009090: homoserine biosynthetic process | 1.42E-04 |
| 7 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 1.42E-04 |
| 8 | GO:0034337: RNA folding | 1.42E-04 |
| 9 | GO:0000023: maltose metabolic process | 1.42E-04 |
| 10 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 1.42E-04 |
| 11 | GO:0005982: starch metabolic process | 1.80E-04 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 1.92E-04 |
| 13 | GO:0032259: methylation | 2.33E-04 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 2.49E-04 |
| 15 | GO:0005983: starch catabolic process | 2.87E-04 |
| 16 | GO:0006898: receptor-mediated endocytosis | 3.25E-04 |
| 17 | GO:0005976: polysaccharide metabolic process | 3.25E-04 |
| 18 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.25E-04 |
| 19 | GO:0010353: response to trehalose | 3.25E-04 |
| 20 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.25E-04 |
| 21 | GO:0055114: oxidation-reduction process | 3.78E-04 |
| 22 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.63E-04 |
| 23 | GO:0006000: fructose metabolic process | 5.33E-04 |
| 24 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 5.33E-04 |
| 25 | GO:0006518: peptide metabolic process | 5.33E-04 |
| 26 | GO:0009067: aspartate family amino acid biosynthetic process | 7.63E-04 |
| 27 | GO:1902358: sulfate transmembrane transport | 7.63E-04 |
| 28 | GO:0006020: inositol metabolic process | 7.63E-04 |
| 29 | GO:0015994: chlorophyll metabolic process | 1.01E-03 |
| 30 | GO:0006021: inositol biosynthetic process | 1.01E-03 |
| 31 | GO:0071483: cellular response to blue light | 1.01E-03 |
| 32 | GO:0010021: amylopectin biosynthetic process | 1.01E-03 |
| 33 | GO:0019252: starch biosynthetic process | 1.14E-03 |
| 34 | GO:0016120: carotene biosynthetic process | 1.28E-03 |
| 35 | GO:0006656: phosphatidylcholine biosynthetic process | 1.28E-03 |
| 36 | GO:0009904: chloroplast accumulation movement | 1.28E-03 |
| 37 | GO:0046855: inositol phosphate dephosphorylation | 1.57E-03 |
| 38 | GO:1902456: regulation of stomatal opening | 1.57E-03 |
| 39 | GO:0009643: photosynthetic acclimation | 1.57E-03 |
| 40 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.57E-03 |
| 41 | GO:1901259: chloroplast rRNA processing | 1.88E-03 |
| 42 | GO:0009903: chloroplast avoidance movement | 1.88E-03 |
| 43 | GO:0009088: threonine biosynthetic process | 1.88E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 2.21E-03 |
| 45 | GO:0008272: sulfate transport | 2.21E-03 |
| 46 | GO:0009610: response to symbiotic fungus | 2.21E-03 |
| 47 | GO:0019827: stem cell population maintenance | 2.56E-03 |
| 48 | GO:0005978: glycogen biosynthetic process | 2.56E-03 |
| 49 | GO:0030091: protein repair | 2.56E-03 |
| 50 | GO:0050821: protein stabilization | 2.56E-03 |
| 51 | GO:0006002: fructose 6-phosphate metabolic process | 2.93E-03 |
| 52 | GO:0015996: chlorophyll catabolic process | 2.93E-03 |
| 53 | GO:0010206: photosystem II repair | 3.31E-03 |
| 54 | GO:0009086: methionine biosynthetic process | 3.71E-03 |
| 55 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.71E-03 |
| 56 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 3.71E-03 |
| 57 | GO:0009641: shade avoidance | 4.12E-03 |
| 58 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.55E-03 |
| 59 | GO:0006813: potassium ion transport | 4.95E-03 |
| 60 | GO:0006790: sulfur compound metabolic process | 4.99E-03 |
| 61 | GO:0015979: photosynthesis | 5.13E-03 |
| 62 | GO:0030048: actin filament-based movement | 5.45E-03 |
| 63 | GO:0018107: peptidyl-threonine phosphorylation | 5.45E-03 |
| 64 | GO:0009725: response to hormone | 5.45E-03 |
| 65 | GO:0006094: gluconeogenesis | 5.45E-03 |
| 66 | GO:0005986: sucrose biosynthetic process | 5.45E-03 |
| 67 | GO:0019253: reductive pentose-phosphate cycle | 5.92E-03 |
| 68 | GO:0007015: actin filament organization | 5.92E-03 |
| 69 | GO:0010223: secondary shoot formation | 5.92E-03 |
| 70 | GO:0009266: response to temperature stimulus | 5.92E-03 |
| 71 | GO:0005985: sucrose metabolic process | 6.41E-03 |
| 72 | GO:0046854: phosphatidylinositol phosphorylation | 6.41E-03 |
| 73 | GO:0051260: protein homooligomerization | 8.49E-03 |
| 74 | GO:0061077: chaperone-mediated protein folding | 8.49E-03 |
| 75 | GO:0016226: iron-sulfur cluster assembly | 9.05E-03 |
| 76 | GO:0030433: ubiquitin-dependent ERAD pathway | 9.05E-03 |
| 77 | GO:0019748: secondary metabolic process | 9.05E-03 |
| 78 | GO:0006606: protein import into nucleus | 1.14E-02 |
| 79 | GO:0006662: glycerol ether metabolic process | 1.20E-02 |
| 80 | GO:0009735: response to cytokinin | 1.32E-02 |
| 81 | GO:0009630: gravitropism | 1.46E-02 |
| 82 | GO:1901657: glycosyl compound metabolic process | 1.53E-02 |
| 83 | GO:0001666: response to hypoxia | 1.81E-02 |
| 84 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.88E-02 |
| 85 | GO:0016311: dephosphorylation | 2.11E-02 |
| 86 | GO:0000160: phosphorelay signal transduction system | 2.26E-02 |
| 87 | GO:0009813: flavonoid biosynthetic process | 2.26E-02 |
| 88 | GO:0080167: response to karrikin | 2.35E-02 |
| 89 | GO:0009631: cold acclimation | 2.42E-02 |
| 90 | GO:0007568: aging | 2.42E-02 |
| 91 | GO:0044550: secondary metabolite biosynthetic process | 2.55E-02 |
| 92 | GO:0034599: cellular response to oxidative stress | 2.67E-02 |
| 93 | GO:0045454: cell redox homeostasis | 2.81E-02 |
| 94 | GO:0010114: response to red light | 3.10E-02 |
| 95 | GO:0009744: response to sucrose | 3.10E-02 |
| 96 | GO:0000209: protein polyubiquitination | 3.19E-02 |
| 97 | GO:0006629: lipid metabolic process | 3.46E-02 |
| 98 | GO:0006979: response to oxidative stress | 3.60E-02 |
| 99 | GO:0006364: rRNA processing | 3.83E-02 |
| 100 | GO:0009736: cytokinin-activated signaling pathway | 3.83E-02 |
| 101 | GO:0010224: response to UV-B | 3.93E-02 |
| 102 | GO:0009626: plant-type hypersensitive response | 4.52E-02 |
| 103 | GO:0009553: embryo sac development | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 2 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 3 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 5 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 8 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 10 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 0.00E+00 |
| 11 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.42E-04 |
| 12 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 1.42E-04 |
| 13 | GO:0004134: 4-alpha-glucanotransferase activity | 1.42E-04 |
| 14 | GO:0004645: phosphorylase activity | 1.42E-04 |
| 15 | GO:0034256: chlorophyll(ide) b reductase activity | 1.42E-04 |
| 16 | GO:0045486: naringenin 3-dioxygenase activity | 1.42E-04 |
| 17 | GO:0035671: enone reductase activity | 1.42E-04 |
| 18 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 1.42E-04 |
| 19 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.42E-04 |
| 20 | GO:0080079: cellobiose glucosidase activity | 1.42E-04 |
| 21 | GO:0050521: alpha-glucan, water dikinase activity | 1.42E-04 |
| 22 | GO:0008184: glycogen phosphorylase activity | 1.42E-04 |
| 23 | GO:0015386: potassium:proton antiporter activity | 2.49E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.25E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.25E-04 |
| 26 | GO:0004412: homoserine dehydrogenase activity | 3.25E-04 |
| 27 | GO:0018708: thiol S-methyltransferase activity | 3.25E-04 |
| 28 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.25E-04 |
| 29 | GO:0019172: glyoxalase III activity | 3.25E-04 |
| 30 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.25E-04 |
| 31 | GO:0047746: chlorophyllase activity | 3.25E-04 |
| 32 | GO:0042389: omega-3 fatty acid desaturase activity | 3.25E-04 |
| 33 | GO:0010297: heteropolysaccharide binding | 3.25E-04 |
| 34 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.25E-04 |
| 35 | GO:0033201: alpha-1,4-glucan synthase activity | 3.25E-04 |
| 36 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.25E-04 |
| 37 | GO:0008168: methyltransferase activity | 5.28E-04 |
| 38 | GO:0043169: cation binding | 5.33E-04 |
| 39 | GO:0004373: glycogen (starch) synthase activity | 5.33E-04 |
| 40 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.33E-04 |
| 41 | GO:0015079: potassium ion transmembrane transporter activity | 5.65E-04 |
| 42 | GO:0016851: magnesium chelatase activity | 7.63E-04 |
| 43 | GO:0022890: inorganic cation transmembrane transporter activity | 7.63E-04 |
| 44 | GO:0004072: aspartate kinase activity | 7.63E-04 |
| 45 | GO:0019201: nucleotide kinase activity | 7.63E-04 |
| 46 | GO:0009011: starch synthase activity | 1.01E-03 |
| 47 | GO:0004462: lactoylglutathione lyase activity | 1.57E-03 |
| 48 | GO:0008200: ion channel inhibitor activity | 1.57E-03 |
| 49 | GO:2001070: starch binding | 1.57E-03 |
| 50 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.88E-03 |
| 51 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.88E-03 |
| 52 | GO:0004017: adenylate kinase activity | 1.88E-03 |
| 53 | GO:0004602: glutathione peroxidase activity | 1.88E-03 |
| 54 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.93E-03 |
| 55 | GO:0008271: secondary active sulfate transmembrane transporter activity | 2.93E-03 |
| 56 | GO:0003993: acid phosphatase activity | 2.99E-03 |
| 57 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 3.71E-03 |
| 58 | GO:0016491: oxidoreductase activity | 4.00E-03 |
| 59 | GO:0047372: acylglycerol lipase activity | 4.55E-03 |
| 60 | GO:0015116: sulfate transmembrane transporter activity | 4.99E-03 |
| 61 | GO:0004565: beta-galactosidase activity | 5.45E-03 |
| 62 | GO:0031072: heat shock protein binding | 5.45E-03 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.92E-03 |
| 64 | GO:0003774: motor activity | 5.92E-03 |
| 65 | GO:0005528: FK506 binding | 7.42E-03 |
| 66 | GO:0051536: iron-sulfur cluster binding | 7.42E-03 |
| 67 | GO:0031418: L-ascorbic acid binding | 7.42E-03 |
| 68 | GO:0016779: nucleotidyltransferase activity | 9.05E-03 |
| 69 | GO:0003756: protein disulfide isomerase activity | 1.02E-02 |
| 70 | GO:0047134: protein-disulfide reductase activity | 1.08E-02 |
| 71 | GO:0005249: voltage-gated potassium channel activity | 1.14E-02 |
| 72 | GO:0015299: solute:proton antiporter activity | 1.26E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 1.26E-02 |
| 74 | GO:0004872: receptor activity | 1.33E-02 |
| 75 | GO:0048038: quinone binding | 1.39E-02 |
| 76 | GO:0000156: phosphorelay response regulator activity | 1.53E-02 |
| 77 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.53E-02 |
| 78 | GO:0016597: amino acid binding | 1.74E-02 |
| 79 | GO:0102483: scopolin beta-glucosidase activity | 2.03E-02 |
| 80 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.09E-02 |
| 81 | GO:0008236: serine-type peptidase activity | 2.11E-02 |
| 82 | GO:0004222: metalloendopeptidase activity | 2.34E-02 |
| 83 | GO:0003746: translation elongation factor activity | 2.59E-02 |
| 84 | GO:0008422: beta-glucosidase activity | 2.76E-02 |
| 85 | GO:0050661: NADP binding | 2.84E-02 |
| 86 | GO:0016787: hydrolase activity | 3.01E-02 |
| 87 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.03E-02 |
| 88 | GO:0004185: serine-type carboxypeptidase activity | 3.10E-02 |
| 89 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.28E-02 |
| 90 | GO:0015293: symporter activity | 3.37E-02 |
| 91 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.46E-02 |
| 92 | GO:0005506: iron ion binding | 3.50E-02 |
| 93 | GO:0031625: ubiquitin protein ligase binding | 4.12E-02 |
| 94 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.42E-02 |
| 95 | GO:0051082: unfolded protein binding | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.07E-20 |
| 2 | GO:0009534: chloroplast thylakoid | 1.70E-13 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 6.61E-12 |
| 4 | GO:0009941: chloroplast envelope | 1.00E-07 |
| 5 | GO:0009570: chloroplast stroma | 4.43E-06 |
| 6 | GO:0031969: chloroplast membrane | 1.12E-05 |
| 7 | GO:0009501: amyloplast | 9.72E-05 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.50E-04 |
| 9 | GO:0031977: thylakoid lumen | 3.82E-04 |
| 10 | GO:0010007: magnesium chelatase complex | 5.33E-04 |
| 11 | GO:0042651: thylakoid membrane | 5.65E-04 |
| 12 | GO:0008076: voltage-gated potassium channel complex | 7.63E-04 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 1.27E-03 |
| 14 | GO:0010319: stromule | 1.56E-03 |
| 15 | GO:0031982: vesicle | 2.56E-03 |
| 16 | GO:0016459: myosin complex | 4.12E-03 |
| 17 | GO:0009579: thylakoid | 4.35E-03 |
| 18 | GO:0032040: small-subunit processome | 4.99E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 7.95E-03 |
| 20 | GO:0019898: extrinsic component of membrane | 1.33E-02 |
| 21 | GO:0009706: chloroplast inner membrane | 4.92E-02 |