co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016139: glycoside catabolic process	0.00E+00
2	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
3	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
4	GO:0006099: tricarboxylic acid cycle	1.54E-06
5	GO:0006102: isocitrate metabolic process	2.31E-05
6	GO:0042742: defense response to bacterium	3.42E-05
7	GO:0009821: alkaloid biosynthetic process	3.71E-05
8	GO:1901430: positive regulation of syringal lignin biosynthetic process	5.64E-05
9	GO:0006144: purine nucleobase metabolic process	5.64E-05
10	GO:0019628: urate catabolic process	5.64E-05
11	GO:0051252: regulation of RNA metabolic process	1.37E-04
12	GO:0031204: posttranslational protein targeting to membrane, translocation	1.37E-04
13	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.37E-04
14	GO:0046939: nucleotide phosphorylation	1.37E-04
15	GO:0010372: positive regulation of gibberellin biosynthetic process	1.37E-04
16	GO:0010359: regulation of anion channel activity	2.34E-04
17	GO:0055074: calcium ion homeostasis	2.34E-04
18	GO:0055114: oxidation-reduction process	2.36E-04
19	GO:0009058: biosynthetic process	2.85E-04
20	GO:0042744: hydrogen peroxide catabolic process	3.16E-04
21	GO:0009615: response to virus	5.36E-04
22	GO:0046283: anthocyanin-containing compound metabolic process	5.78E-04
23	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.78E-04
24	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.07E-04
25	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	7.07E-04
26	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	7.07E-04
27	GO:0006499: N-terminal protein myristoylation	7.61E-04
28	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.44E-04
29	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	9.85E-04
30	GO:0022904: respiratory electron transport chain	9.85E-04
31	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.13E-03
32	GO:0006402: mRNA catabolic process	1.13E-03
33	GO:0010120: camalexin biosynthetic process	1.29E-03
34	GO:0010204: defense response signaling pathway, resistance gene-independent	1.29E-03
35	GO:0022900: electron transport chain	1.29E-03
36	GO:0009060: aerobic respiration	1.45E-03
37	GO:0009753: response to jasmonic acid	1.62E-03
38	GO:0090332: stomatal closure	1.62E-03
39	GO:0006032: chitin catabolic process	1.79E-03
40	GO:0043069: negative regulation of programmed cell death	1.79E-03
41	GO:0009620: response to fungus	1.90E-03
42	GO:0072593: reactive oxygen species metabolic process	1.97E-03
43	GO:0009682: induced systemic resistance	1.97E-03
44	GO:0002213: defense response to insect	2.16E-03
45	GO:0006807: nitrogen compound metabolic process	2.36E-03
46	GO:0034605: cellular response to heat	2.56E-03
47	GO:0007031: peroxisome organization	2.76E-03
48	GO:0010167: response to nitrate	2.76E-03
49	GO:0009611: response to wounding	3.13E-03
50	GO:0010150: leaf senescence	3.55E-03
51	GO:0015992: proton transport	3.63E-03
52	GO:0030433: ubiquitin-dependent ERAD pathway	3.86E-03
53	GO:0009306: protein secretion	4.34E-03
54	GO:0010089: xylem development	4.34E-03
55	GO:0010118: stomatal movement	4.83E-03
56	GO:0010183: pollen tube guidance	5.61E-03
57	GO:0031047: gene silencing by RNA	6.15E-03
58	GO:0009723: response to ethylene	6.32E-03
59	GO:0006464: cellular protein modification process	6.71E-03
60	GO:0010252: auxin homeostasis	6.71E-03
61	GO:0006979: response to oxidative stress	7.53E-03
62	GO:0009651: response to salt stress	9.12E-03
63	GO:0009813: flavonoid biosynthetic process	9.45E-03
64	GO:0009751: response to salicylic acid	9.87E-03
65	GO:0010119: regulation of stomatal movement	1.01E-02
66	GO:0007568: aging	1.01E-02
67	GO:0015031: protein transport	1.01E-02
68	GO:0006397: mRNA processing	1.04E-02
69	GO:0008283: cell proliferation	1.29E-02
70	GO:0009926: auxin polar transport	1.29E-02
71	GO:0046686: response to cadmium ion	1.31E-02
72	GO:0042546: cell wall biogenesis	1.33E-02
73	GO:0006855: drug transmembrane transport	1.44E-02
74	GO:0031347: regulation of defense response	1.48E-02
75	GO:0009809: lignin biosynthetic process	1.59E-02
76	GO:0006096: glycolytic process	1.79E-02
77	GO:0009626: plant-type hypersensitive response	1.88E-02
78	GO:0006952: defense response	1.94E-02
79	GO:0009624: response to nematode	2.04E-02
80	GO:0018105: peptidyl-serine phosphorylation	2.09E-02
81	GO:0006396: RNA processing	2.09E-02
82	GO:0006511: ubiquitin-dependent protein catabolic process	2.42E-02
83	GO:0050832: defense response to fungus	2.95E-02
84	GO:0009739: response to gibberellin	3.27E-02
85	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.27E-02
86	GO:0009617: response to bacterium	3.42E-02
87	GO:0009826: unidimensional cell growth	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
2	GO:0035885: exochitinase activity	0.00E+00
3	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
4	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
5	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
6	GO:0008843: endochitinase activity	0.00E+00
7	GO:0004846: urate oxidase activity	0.00E+00
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.75E-06
9	GO:0016844: strictosidine synthase activity	4.56E-05
10	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.20E-05
11	GO:0047326: inositol tetrakisphosphate 5-kinase activity	5.64E-05
12	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	5.64E-05
13	GO:0048037: cofactor binding	5.64E-05
14	GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	5.64E-05
15	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	5.64E-05
16	GO:0010013: N-1-naphthylphthalamic acid binding	5.64E-05
17	GO:0000824: inositol tetrakisphosphate 3-kinase activity	5.64E-05
18	GO:0008428: ribonuclease inhibitor activity	1.37E-04
19	GO:0008517: folic acid transporter activity	1.37E-04
20	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	1.37E-04
21	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.37E-04
22	GO:0004566: beta-glucuronidase activity	1.37E-04
23	GO:0046593: mandelonitrile lyase activity	1.37E-04
24	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.37E-04
25	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	3.41E-04
26	GO:0019201: nucleotide kinase activity	3.41E-04
27	GO:0010279: indole-3-acetic acid amido synthetase activity	4.56E-04
28	GO:0005086: ARF guanyl-nucleotide exchange factor activity	4.56E-04
29	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	4.56E-04
30	GO:0008177: succinate dehydrogenase (ubiquinone) activity	5.78E-04
31	GO:0051538: 3 iron, 4 sulfur cluster binding	5.78E-04
32	GO:0008948: oxaloacetate decarboxylase activity	5.78E-04
33	GO:0000104: succinate dehydrogenase activity	5.78E-04
34	GO:0020037: heme binding	6.13E-04
35	GO:0004601: peroxidase activity	7.02E-04
36	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	7.07E-04
37	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	7.07E-04
38	GO:0036402: proteasome-activating ATPase activity	7.07E-04
39	GO:0004017: adenylate kinase activity	8.44E-04
40	GO:0004656: procollagen-proline 4-dioxygenase activity	8.44E-04
41	GO:0008121: ubiquinol-cytochrome-c reductase activity	9.85E-04
42	GO:0005198: structural molecule activity	1.23E-03
43	GO:0030955: potassium ion binding	1.62E-03
44	GO:0004743: pyruvate kinase activity	1.62E-03
45	GO:0005524: ATP binding	1.95E-03
46	GO:0004177: aminopeptidase activity	1.97E-03
47	GO:0008559: xenobiotic-transporting ATPase activity	1.97E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	2.36E-03
49	GO:0008061: chitin binding	2.76E-03
50	GO:0017025: TBP-class protein binding	2.76E-03
51	GO:0008565: protein transporter activity	3.08E-03
52	GO:0031418: L-ascorbic acid binding	3.18E-03
53	GO:0005507: copper ion binding	4.77E-03
54	GO:0000287: magnesium ion binding	5.37E-03
55	GO:0004518: nuclease activity	6.15E-03
56	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.00E-03
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	8.19E-03
58	GO:0004683: calmodulin-dependent protein kinase activity	8.50E-03
59	GO:0046872: metal ion binding	8.94E-03
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.13E-03
61	GO:0016491: oxidoreductase activity	1.06E-02
62	GO:0009055: electron carrier activity	1.07E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	1.18E-02
64	GO:0004364: glutathione transferase activity	1.25E-02
65	GO:0016301: kinase activity	1.30E-02
66	GO:0051537: 2 iron, 2 sulfur cluster binding	1.36E-02
67	GO:0051287: NAD binding	1.48E-02
68	GO:0051082: unfolded protein binding	2.04E-02
69	GO:0008026: ATP-dependent helicase activity	2.13E-02
70	GO:0030246: carbohydrate binding	2.40E-02
71	GO:0030170: pyridoxal phosphate binding	2.58E-02
72	GO:0005509: calcium ion binding	3.33E-02
73	GO:0005506: iron ion binding	3.55E-02
74	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.58E-02
75	GO:0016788: hydrolase activity, acting on ester bonds	4.17E-02
76	GO:0043531: ADP binding	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
3	GO:0016442: RISC complex	5.64E-05
4	GO:0005773: vacuole	7.05E-05
5	GO:0045281: succinate dehydrogenase complex	1.37E-04
6	GO:0005618: cell wall	1.72E-04
7	GO:0016471: vacuolar proton-transporting V-type ATPase complex	4.56E-04
8	GO:0032588: trans-Golgi network membrane	7.07E-04
9	GO:0031597: cytosolic proteasome complex	8.44E-04
10	GO:0031595: nuclear proteasome complex	9.85E-04
11	GO:0045273: respiratory chain complex II	1.13E-03
12	GO:0010494: cytoplasmic stress granule	1.45E-03
13	GO:0031901: early endosome membrane	1.45E-03
14	GO:0000502: proteasome complex	1.47E-03
15	GO:0008540: proteasome regulatory particle, base subcomplex	1.62E-03
16	GO:0005794: Golgi apparatus	1.66E-03
17	GO:0048471: perinuclear region of cytoplasm	1.97E-03
18	GO:0005765: lysosomal membrane	1.97E-03
19	GO:0005774: vacuolar membrane	2.41E-03
20	GO:0005750: mitochondrial respiratory chain complex III	2.56E-03
21	GO:0005758: mitochondrial intermembrane space	3.18E-03
22	GO:0070469: respiratory chain	3.40E-03
23	GO:0030529: intracellular ribonucleoprotein complex	7.59E-03
24	GO:0000932: P-body	7.59E-03
25	GO:0005788: endoplasmic reticulum lumen	7.89E-03
26	GO:0005783: endoplasmic reticulum	8.22E-03
27	GO:0005886: plasma membrane	8.94E-03
28	GO:0000325: plant-type vacuole	1.01E-02
29	GO:0005829: cytosol	1.11E-02
30	GO:0031977: thylakoid lumen	1.22E-02
31	GO:0090406: pollen tube	1.29E-02
32	GO:0005635: nuclear envelope	1.67E-02
33	GO:0010287: plastoglobule	2.31E-02
34	GO:0005737: cytoplasm	4.04E-02
35	GO:0009505: plant-type cell wall	4.51E-02