GO Enrichment Analysis of Co-expressed Genes with
AT2G39920
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006066: alcohol metabolic process | 0.00E+00 |
| 2 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 3 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 4 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 5 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 1.32E-05 |
| 7 | GO:0005980: glycogen catabolic process | 1.58E-04 |
| 8 | GO:0000476: maturation of 4.5S rRNA | 1.58E-04 |
| 9 | GO:0000967: rRNA 5'-end processing | 1.58E-04 |
| 10 | GO:0009090: homoserine biosynthetic process | 1.58E-04 |
| 11 | GO:1905039: carboxylic acid transmembrane transport | 1.58E-04 |
| 12 | GO:1905200: gibberellic acid transmembrane transport | 1.58E-04 |
| 13 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 1.58E-04 |
| 14 | GO:0010028: xanthophyll cycle | 1.58E-04 |
| 15 | GO:0034337: RNA folding | 1.58E-04 |
| 16 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 1.58E-04 |
| 17 | GO:0080112: seed growth | 1.58E-04 |
| 18 | GO:0005982: starch metabolic process | 2.12E-04 |
| 19 | GO:0006898: receptor-mediated endocytosis | 3.60E-04 |
| 20 | GO:0016122: xanthophyll metabolic process | 3.60E-04 |
| 21 | GO:0034470: ncRNA processing | 3.60E-04 |
| 22 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 5.89E-04 |
| 23 | GO:0006696: ergosterol biosynthetic process | 5.89E-04 |
| 24 | GO:0006164: purine nucleotide biosynthetic process | 8.43E-04 |
| 25 | GO:0050482: arachidonic acid secretion | 8.43E-04 |
| 26 | GO:0009067: aspartate family amino acid biosynthetic process | 8.43E-04 |
| 27 | GO:1902358: sulfate transmembrane transport | 8.43E-04 |
| 28 | GO:0045338: farnesyl diphosphate metabolic process | 8.43E-04 |
| 29 | GO:0006020: inositol metabolic process | 8.43E-04 |
| 30 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.43E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 1.12E-03 |
| 32 | GO:0071483: cellular response to blue light | 1.12E-03 |
| 33 | GO:0010021: amylopectin biosynthetic process | 1.12E-03 |
| 34 | GO:0006109: regulation of carbohydrate metabolic process | 1.12E-03 |
| 35 | GO:0015994: chlorophyll metabolic process | 1.12E-03 |
| 36 | GO:0006662: glycerol ether metabolic process | 1.15E-03 |
| 37 | GO:0019252: starch biosynthetic process | 1.32E-03 |
| 38 | GO:0006656: phosphatidylcholine biosynthetic process | 1.41E-03 |
| 39 | GO:0009904: chloroplast accumulation movement | 1.41E-03 |
| 40 | GO:1901657: glycosyl compound metabolic process | 1.61E-03 |
| 41 | GO:0046855: inositol phosphate dephosphorylation | 1.74E-03 |
| 42 | GO:1902456: regulation of stomatal opening | 1.74E-03 |
| 43 | GO:0010190: cytochrome b6f complex assembly | 1.74E-03 |
| 44 | GO:0009643: photosynthetic acclimation | 1.74E-03 |
| 45 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.74E-03 |
| 46 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.74E-03 |
| 47 | GO:0016126: sterol biosynthetic process | 2.03E-03 |
| 48 | GO:0042026: protein refolding | 2.09E-03 |
| 49 | GO:1901259: chloroplast rRNA processing | 2.09E-03 |
| 50 | GO:0009903: chloroplast avoidance movement | 2.09E-03 |
| 51 | GO:0009088: threonine biosynthetic process | 2.09E-03 |
| 52 | GO:0008272: sulfate transport | 2.45E-03 |
| 53 | GO:0010196: nonphotochemical quenching | 2.45E-03 |
| 54 | GO:0009642: response to light intensity | 2.84E-03 |
| 55 | GO:0006353: DNA-templated transcription, termination | 2.84E-03 |
| 56 | GO:0052543: callose deposition in cell wall | 2.84E-03 |
| 57 | GO:0006644: phospholipid metabolic process | 2.84E-03 |
| 58 | GO:0005978: glycogen biosynthetic process | 2.84E-03 |
| 59 | GO:0032544: plastid translation | 3.25E-03 |
| 60 | GO:0015996: chlorophyll catabolic process | 3.25E-03 |
| 61 | GO:0034599: cellular response to oxidative stress | 3.48E-03 |
| 62 | GO:0055114: oxidation-reduction process | 3.65E-03 |
| 63 | GO:0009821: alkaloid biosynthetic process | 3.67E-03 |
| 64 | GO:0006189: 'de novo' IMP biosynthetic process | 3.67E-03 |
| 65 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 4.12E-03 |
| 66 | GO:0009086: methionine biosynthetic process | 4.12E-03 |
| 67 | GO:0009641: shade avoidance | 4.58E-03 |
| 68 | GO:0015770: sucrose transport | 5.05E-03 |
| 69 | GO:0006415: translational termination | 5.05E-03 |
| 70 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.05E-03 |
| 71 | GO:0043085: positive regulation of catalytic activity | 5.05E-03 |
| 72 | GO:0006790: sulfur compound metabolic process | 5.55E-03 |
| 73 | GO:0018107: peptidyl-threonine phosphorylation | 6.06E-03 |
| 74 | GO:0007015: actin filament organization | 6.59E-03 |
| 75 | GO:0010223: secondary shoot formation | 6.59E-03 |
| 76 | GO:0045454: cell redox homeostasis | 6.64E-03 |
| 77 | GO:0009901: anther dehiscence | 7.13E-03 |
| 78 | GO:0046854: phosphatidylinositol phosphorylation | 7.13E-03 |
| 79 | GO:0032259: methylation | 8.20E-03 |
| 80 | GO:0080147: root hair cell development | 8.27E-03 |
| 81 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.86E-03 |
| 82 | GO:0016114: terpenoid biosynthetic process | 9.46E-03 |
| 83 | GO:0061077: chaperone-mediated protein folding | 9.46E-03 |
| 84 | GO:0016226: iron-sulfur cluster assembly | 1.01E-02 |
| 85 | GO:0007005: mitochondrion organization | 1.01E-02 |
| 86 | GO:0019748: secondary metabolic process | 1.01E-02 |
| 87 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.07E-02 |
| 88 | GO:0009741: response to brassinosteroid | 1.34E-02 |
| 89 | GO:0032502: developmental process | 1.63E-02 |
| 90 | GO:0009630: gravitropism | 1.63E-02 |
| 91 | GO:0009828: plant-type cell wall loosening | 1.78E-02 |
| 92 | GO:0010027: thylakoid membrane organization | 2.02E-02 |
| 93 | GO:0009627: systemic acquired resistance | 2.19E-02 |
| 94 | GO:0008219: cell death | 2.44E-02 |
| 95 | GO:0009813: flavonoid biosynthetic process | 2.53E-02 |
| 96 | GO:0007568: aging | 2.71E-02 |
| 97 | GO:0044550: secondary metabolite biosynthetic process | 2.98E-02 |
| 98 | GO:0015979: photosynthesis | 3.13E-02 |
| 99 | GO:0006631: fatty acid metabolic process | 3.27E-02 |
| 100 | GO:0010114: response to red light | 3.46E-02 |
| 101 | GO:0009408: response to heat | 4.03E-02 |
| 102 | GO:0009664: plant-type cell wall organization | 4.07E-02 |
| 103 | GO:0042538: hyperosmotic salinity response | 4.07E-02 |
| 104 | GO:0006364: rRNA processing | 4.28E-02 |
| 105 | GO:0006813: potassium ion transport | 4.28E-02 |
| 106 | GO:0010224: response to UV-B | 4.38E-02 |
| 107 | GO:0008152: metabolic process | 4.44E-02 |
| 108 | GO:0043086: negative regulation of catalytic activity | 4.82E-02 |
| 109 | GO:0009733: response to auxin | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 2 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 3 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 4 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 6 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 10 | GO:0046577: long-chain-alcohol oxidase activity | 0.00E+00 |
| 11 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 12 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 13 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 1.58E-04 |
| 14 | GO:0004645: phosphorylase activity | 1.58E-04 |
| 15 | GO:0034256: chlorophyll(ide) b reductase activity | 1.58E-04 |
| 16 | GO:0045486: naringenin 3-dioxygenase activity | 1.58E-04 |
| 17 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 1.58E-04 |
| 18 | GO:0080079: cellobiose glucosidase activity | 1.58E-04 |
| 19 | GO:1905201: gibberellin transmembrane transporter activity | 1.58E-04 |
| 20 | GO:0008184: glycogen phosphorylase activity | 1.58E-04 |
| 21 | GO:0071949: FAD binding | 1.77E-04 |
| 22 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.60E-04 |
| 23 | GO:0004412: homoserine dehydrogenase activity | 3.60E-04 |
| 24 | GO:0008967: phosphoglycolate phosphatase activity | 3.60E-04 |
| 25 | GO:0018708: thiol S-methyltransferase activity | 3.60E-04 |
| 26 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.60E-04 |
| 27 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.60E-04 |
| 28 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.60E-04 |
| 29 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.60E-04 |
| 30 | GO:0033201: alpha-1,4-glucan synthase activity | 3.60E-04 |
| 31 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.60E-04 |
| 32 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.89E-04 |
| 33 | GO:0043169: cation binding | 5.89E-04 |
| 34 | GO:0004373: glycogen (starch) synthase activity | 5.89E-04 |
| 35 | GO:0016851: magnesium chelatase activity | 8.43E-04 |
| 36 | GO:0016149: translation release factor activity, codon specific | 8.43E-04 |
| 37 | GO:0022890: inorganic cation transmembrane transporter activity | 8.43E-04 |
| 38 | GO:0004072: aspartate kinase activity | 8.43E-04 |
| 39 | GO:0019201: nucleotide kinase activity | 8.43E-04 |
| 40 | GO:0047134: protein-disulfide reductase activity | 9.96E-04 |
| 41 | GO:0009011: starch synthase activity | 1.12E-03 |
| 42 | GO:0004791: thioredoxin-disulfide reductase activity | 1.24E-03 |
| 43 | GO:0004623: phospholipase A2 activity | 1.41E-03 |
| 44 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.61E-03 |
| 45 | GO:0008200: ion channel inhibitor activity | 1.74E-03 |
| 46 | GO:0004017: adenylate kinase activity | 2.09E-03 |
| 47 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.09E-03 |
| 48 | GO:0102483: scopolin beta-glucosidase activity | 2.38E-03 |
| 49 | GO:0004525: ribonuclease III activity | 2.84E-03 |
| 50 | GO:0008271: secondary active sulfate transmembrane transporter activity | 3.25E-03 |
| 51 | GO:0008422: beta-glucosidase activity | 3.64E-03 |
| 52 | GO:0003747: translation release factor activity | 3.67E-03 |
| 53 | GO:0016844: strictosidine synthase activity | 4.12E-03 |
| 54 | GO:0008047: enzyme activator activity | 4.58E-03 |
| 55 | GO:0015386: potassium:proton antiporter activity | 5.05E-03 |
| 56 | GO:0008515: sucrose transmembrane transporter activity | 5.05E-03 |
| 57 | GO:0008327: methyl-CpG binding | 5.05E-03 |
| 58 | GO:0044183: protein binding involved in protein folding | 5.05E-03 |
| 59 | GO:0047372: acylglycerol lipase activity | 5.05E-03 |
| 60 | GO:0016491: oxidoreductase activity | 5.26E-03 |
| 61 | GO:0015116: sulfate transmembrane transporter activity | 5.55E-03 |
| 62 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.06E-03 |
| 63 | GO:0031072: heat shock protein binding | 6.06E-03 |
| 64 | GO:0004535: poly(A)-specific ribonuclease activity | 6.59E-03 |
| 65 | GO:0051119: sugar transmembrane transporter activity | 7.13E-03 |
| 66 | GO:0031409: pigment binding | 7.69E-03 |
| 67 | GO:0051082: unfolded protein binding | 8.21E-03 |
| 68 | GO:0051536: iron-sulfur cluster binding | 8.27E-03 |
| 69 | GO:0031418: L-ascorbic acid binding | 8.27E-03 |
| 70 | GO:0004857: enzyme inhibitor activity | 8.27E-03 |
| 71 | GO:0005528: FK506 binding | 8.27E-03 |
| 72 | GO:0015035: protein disulfide oxidoreductase activity | 8.46E-03 |
| 73 | GO:0015079: potassium ion transmembrane transporter activity | 8.86E-03 |
| 74 | GO:0016779: nucleotidyltransferase activity | 1.01E-02 |
| 75 | GO:0003756: protein disulfide isomerase activity | 1.14E-02 |
| 76 | GO:0016787: hydrolase activity | 1.23E-02 |
| 77 | GO:0015299: solute:proton antiporter activity | 1.41E-02 |
| 78 | GO:0016597: amino acid binding | 1.94E-02 |
| 79 | GO:0016168: chlorophyll binding | 2.10E-02 |
| 80 | GO:0008168: methyltransferase activity | 2.13E-02 |
| 81 | GO:0008236: serine-type peptidase activity | 2.36E-02 |
| 82 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.54E-02 |
| 83 | GO:0003746: translation elongation factor activity | 2.89E-02 |
| 84 | GO:0050661: NADP binding | 3.17E-02 |
| 85 | GO:0004185: serine-type carboxypeptidase activity | 3.46E-02 |
| 86 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.66E-02 |
| 87 | GO:0043621: protein self-association | 3.66E-02 |
| 88 | GO:0015293: symporter activity | 3.76E-02 |
| 89 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.86E-02 |
| 90 | GO:0005524: ATP binding | 4.13E-02 |
| 91 | GO:0016298: lipase activity | 4.38E-02 |
| 92 | GO:0003723: RNA binding | 4.42E-02 |
| 93 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.72E-23 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.70E-12 |
| 3 | GO:0009534: chloroplast thylakoid | 2.78E-09 |
| 4 | GO:0009570: chloroplast stroma | 1.81E-06 |
| 5 | GO:0009501: amyloplast | 1.15E-04 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.13E-04 |
| 7 | GO:0031977: thylakoid lumen | 4.66E-04 |
| 8 | GO:0010007: magnesium chelatase complex | 5.89E-04 |
| 9 | GO:0042651: thylakoid membrane | 6.55E-04 |
| 10 | GO:0009941: chloroplast envelope | 7.01E-04 |
| 11 | GO:0031982: vesicle | 2.84E-03 |
| 12 | GO:0031969: chloroplast membrane | 5.28E-03 |
| 13 | GO:0032040: small-subunit processome | 5.55E-03 |
| 14 | GO:0030095: chloroplast photosystem II | 6.59E-03 |
| 15 | GO:0030076: light-harvesting complex | 7.13E-03 |
| 16 | GO:0015935: small ribosomal subunit | 9.46E-03 |
| 17 | GO:0010287: plastoglobule | 9.75E-03 |
| 18 | GO:0005623: cell | 1.06E-02 |
| 19 | GO:0010319: stromule | 1.86E-02 |
| 20 | GO:0009579: thylakoid | 2.25E-02 |