co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0006849: plasma membrane pyruvate transport	0.00E+00
3	GO:0015742: alpha-ketoglutarate transport	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0006642: triglyceride mobilization	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0015717: triose phosphate transport	0.00E+00
8	GO:0015995: chlorophyll biosynthetic process	9.09E-11
9	GO:0032544: plastid translation	1.23E-08
10	GO:0006412: translation	2.37E-08
11	GO:0042254: ribosome biogenesis	3.70E-07
12	GO:0019252: starch biosynthetic process	2.57E-06
13	GO:0009658: chloroplast organization	6.04E-06
14	GO:0009735: response to cytokinin	1.32E-05
15	GO:0015979: photosynthesis	1.62E-05
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.99E-05
17	GO:0042026: protein refolding	5.62E-05
18	GO:1901259: chloroplast rRNA processing	5.62E-05
19	GO:0009772: photosynthetic electron transport in photosystem II	7.52E-05
20	GO:0005978: glycogen biosynthetic process	9.72E-05
21	GO:0034337: RNA folding	1.42E-04
22	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.42E-04
23	GO:0006783: heme biosynthetic process	1.50E-04
24	GO:0006782: protoporphyrinogen IX biosynthetic process	2.13E-04
25	GO:0006457: protein folding	2.41E-04
26	GO:0010270: photosystem II oxygen evolving complex assembly	3.25E-04
27	GO:0019388: galactose catabolic process	3.25E-04
28	GO:0019253: reductive pentose-phosphate cycle	3.70E-04
29	GO:0010207: photosystem II assembly	3.70E-04
30	GO:0032504: multicellular organism reproduction	5.33E-04
31	GO:0019563: glycerol catabolic process	5.33E-04
32	GO:0035436: triose phosphate transmembrane transport	5.33E-04
33	GO:0006418: tRNA aminoacylation for protein translation	5.65E-04
34	GO:0061077: chaperone-mediated protein folding	6.19E-04
35	GO:0007005: mitochondrion organization	6.76E-04
36	GO:0006020: inositol metabolic process	7.63E-04
37	GO:0071484: cellular response to light intensity	7.63E-04
38	GO:0051085: chaperone mediated protein folding requiring cofactor	7.63E-04
39	GO:0015729: oxaloacetate transport	7.63E-04
40	GO:0006241: CTP biosynthetic process	7.63E-04
41	GO:0006165: nucleoside diphosphate phosphorylation	7.63E-04
42	GO:0006228: UTP biosynthetic process	7.63E-04
43	GO:0010731: protein glutathionylation	7.63E-04
44	GO:0009590: detection of gravity	7.63E-04
45	GO:0006096: glycolytic process	7.65E-04
46	GO:0019676: ammonia assimilation cycle	1.01E-03
47	GO:0015743: malate transport	1.01E-03
48	GO:0006183: GTP biosynthetic process	1.01E-03
49	GO:0015713: phosphoglycerate transport	1.01E-03
50	GO:0006021: inositol biosynthetic process	1.01E-03
51	GO:0006814: sodium ion transport	1.07E-03
52	GO:0009409: response to cold	1.11E-03
53	GO:0006461: protein complex assembly	1.28E-03
54	GO:0071423: malate transmembrane transport	1.28E-03
55	GO:0000470: maturation of LSU-rRNA	1.57E-03
56	GO:0006828: manganese ion transport	1.57E-03
57	GO:0046855: inositol phosphate dephosphorylation	1.57E-03
58	GO:0010190: cytochrome b6f complex assembly	1.57E-03
59	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.57E-03
60	GO:0009643: photosynthetic acclimation	1.57E-03
61	GO:0006014: D-ribose metabolic process	1.57E-03
62	GO:0006633: fatty acid biosynthetic process	1.69E-03
63	GO:0009955: adaxial/abaxial pattern specification	1.88E-03
64	GO:0006458: 'de novo' protein folding	1.88E-03
65	GO:0009854: oxidative photosynthetic carbon pathway	1.88E-03
66	GO:0006353: DNA-templated transcription, termination	2.56E-03
67	GO:0009657: plastid organization	2.93E-03
68	GO:0010206: photosystem II repair	3.31E-03
69	GO:0006754: ATP biosynthetic process	3.31E-03
70	GO:0006816: calcium ion transport	4.55E-03
71	GO:0006415: translational termination	4.55E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
73	GO:0006790: sulfur compound metabolic process	4.99E-03
74	GO:0005983: starch catabolic process	4.99E-03
75	GO:0006094: gluconeogenesis	5.45E-03
76	GO:0006006: glucose metabolic process	5.45E-03
77	GO:0046854: phosphatidylinositol phosphorylation	6.41E-03
78	GO:0000027: ribosomal large subunit assembly	7.42E-03
79	GO:0043622: cortical microtubule organization	7.95E-03
80	GO:0009768: photosynthesis, light harvesting in photosystem I	7.95E-03
81	GO:0016114: terpenoid biosynthetic process	8.49E-03
82	GO:0035428: hexose transmembrane transport	9.05E-03
83	GO:0016226: iron-sulfur cluster assembly	9.05E-03
84	GO:0006012: galactose metabolic process	9.62E-03
85	GO:0009411: response to UV	9.62E-03
86	GO:0009790: embryo development	1.03E-02
87	GO:0080022: primary root development	1.14E-02
88	GO:0000413: protein peptidyl-prolyl isomerization	1.14E-02
89	GO:0046323: glucose import	1.20E-02
90	GO:0015986: ATP synthesis coupled proton transport	1.26E-02
91	GO:0010027: thylakoid membrane organization	1.81E-02
92	GO:0046686: response to cadmium ion	1.88E-02
93	GO:0009627: systemic acquired resistance	1.96E-02
94	GO:0009817: defense response to fungus, incompatible interaction	2.19E-02
95	GO:0048481: plant ovule development	2.19E-02
96	GO:0008219: cell death	2.19E-02
97	GO:0009813: flavonoid biosynthetic process	2.26E-02
98	GO:0006499: N-terminal protein myristoylation	2.34E-02
99	GO:0007568: aging	2.42E-02
100	GO:0009853: photorespiration	2.59E-02
101	GO:0016051: carbohydrate biosynthetic process	2.59E-02
102	GO:0006839: mitochondrial transport	2.84E-02
103	GO:0006631: fatty acid metabolic process	2.93E-02
104	GO:0042542: response to hydrogen peroxide	3.01E-02
105	GO:0006629: lipid metabolic process	3.46E-02
106	GO:0042742: defense response to bacterium	3.57E-02
107	GO:0042538: hyperosmotic salinity response	3.65E-02
108	GO:0009585: red, far-red light phototransduction	3.83E-02
109	GO:0009624: response to nematode	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0010303: limit dextrinase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0051060: pullulanase activity	0.00E+00
11	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
12	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
13	GO:0008887: glycerate kinase activity	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0019843: rRNA binding	9.96E-15
16	GO:0003735: structural constituent of ribosome	4.77E-10
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.26E-08
18	GO:0005528: FK506 binding	3.73E-07
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.42E-04
20	GO:0004807: triose-phosphate isomerase activity	1.42E-04
21	GO:0044183: protein binding involved in protein folding	2.49E-04
22	GO:0004618: phosphoglycerate kinase activity	3.25E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	3.25E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.25E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	3.25E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	3.25E-04
27	GO:0015367: oxoglutarate:malate antiporter activity	3.25E-04
28	GO:0008967: phosphoglycolate phosphatase activity	3.25E-04
29	GO:0016630: protochlorophyllide reductase activity	3.25E-04
30	GO:0004614: phosphoglucomutase activity	3.25E-04
31	GO:0071917: triose-phosphate transmembrane transporter activity	5.33E-04
32	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.33E-04
33	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.33E-04
34	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.33E-04
35	GO:0002161: aminoacyl-tRNA editing activity	5.33E-04
36	GO:0050833: pyruvate transmembrane transporter activity	5.33E-04
37	GO:0005504: fatty acid binding	5.33E-04
38	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.33E-04
39	GO:0008097: 5S rRNA binding	7.63E-04
40	GO:0008508: bile acid:sodium symporter activity	7.63E-04
41	GO:0019201: nucleotide kinase activity	7.63E-04
42	GO:0016851: magnesium chelatase activity	7.63E-04
43	GO:0015131: oxaloacetate transmembrane transporter activity	7.63E-04
44	GO:0016149: translation release factor activity, codon specific	7.63E-04
45	GO:0004550: nucleoside diphosphate kinase activity	7.63E-04
46	GO:0043023: ribosomal large subunit binding	7.63E-04
47	GO:0004812: aminoacyl-tRNA ligase activity	8.61E-04
48	GO:0051082: unfolded protein binding	9.61E-04
49	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.01E-03
50	GO:0045430: chalcone isomerase activity	1.01E-03
51	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.01E-03
52	GO:0015120: phosphoglycerate transmembrane transporter activity	1.01E-03
53	GO:0003959: NADPH dehydrogenase activity	1.28E-03
54	GO:0004709: MAP kinase kinase kinase activity	1.57E-03
55	GO:0004556: alpha-amylase activity	1.57E-03
56	GO:0051920: peroxiredoxin activity	1.88E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.88E-03
58	GO:0004747: ribokinase activity	1.88E-03
59	GO:0004017: adenylate kinase activity	1.88E-03
60	GO:0015140: malate transmembrane transporter activity	2.21E-03
61	GO:0016209: antioxidant activity	2.56E-03
62	GO:0004034: aldose 1-epimerase activity	2.56E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	2.56E-03
64	GO:0008865: fructokinase activity	2.56E-03
65	GO:0003747: translation release factor activity	3.31E-03
66	GO:0005384: manganese ion transmembrane transporter activity	3.71E-03
67	GO:0047617: acyl-CoA hydrolase activity	3.71E-03
68	GO:0030234: enzyme regulator activity	4.12E-03
69	GO:0047372: acylglycerol lipase activity	4.55E-03
70	GO:0003723: RNA binding	4.80E-03
71	GO:0000049: tRNA binding	4.99E-03
72	GO:0015095: magnesium ion transmembrane transporter activity	5.45E-03
73	GO:0031072: heat shock protein binding	5.45E-03
74	GO:0008266: poly(U) RNA binding	5.92E-03
75	GO:0031409: pigment binding	6.91E-03
76	GO:0051536: iron-sulfur cluster binding	7.42E-03
77	GO:0005102: receptor binding	1.08E-02
78	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.20E-02
79	GO:0016853: isomerase activity	1.26E-02
80	GO:0005355: glucose transmembrane transporter activity	1.26E-02
81	GO:0005524: ATP binding	1.33E-02
82	GO:0016491: oxidoreductase activity	1.46E-02
83	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.67E-02
84	GO:0008237: metallopeptidase activity	1.67E-02
85	GO:0016168: chlorophyll binding	1.88E-02
86	GO:0004222: metalloendopeptidase activity	2.34E-02
87	GO:0004364: glutathione transferase activity	3.01E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0010170: glucose-1-phosphate adenylyltransferase complex	0.00E+00
3	GO:0005835: fatty acid synthase complex	0.00E+00
4	GO:0009507: chloroplast	3.97E-73
5	GO:0009570: chloroplast stroma	4.52E-49
6	GO:0009941: chloroplast envelope	2.17E-44
7	GO:0009535: chloroplast thylakoid membrane	9.55E-32
8	GO:0009579: thylakoid	1.67E-28
9	GO:0009534: chloroplast thylakoid	7.81E-27
10	GO:0009543: chloroplast thylakoid lumen	4.66E-13
11	GO:0031977: thylakoid lumen	1.22E-11
12	GO:0005840: ribosome	1.17E-10
13	GO:0031969: chloroplast membrane	7.32E-07
14	GO:0010319: stromule	5.24E-06
15	GO:0009706: chloroplast inner membrane	1.10E-04
16	GO:0009547: plastid ribosome	1.42E-04
17	GO:0009536: plastid	2.18E-04
18	GO:0048046: apoplast	2.24E-04
19	GO:0016020: membrane	2.45E-04
20	GO:0030095: chloroplast photosystem II	3.70E-04
21	GO:0010007: magnesium chelatase complex	5.33E-04
22	GO:0015935: small ribosomal subunit	6.19E-04
23	GO:0022626: cytosolic ribosome	6.67E-04
24	GO:0009544: chloroplast ATP synthase complex	1.01E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.57E-03
26	GO:0009840: chloroplastic endopeptidase Clp complex	1.88E-03
27	GO:0009533: chloroplast stromal thylakoid	2.21E-03
28	GO:0005763: mitochondrial small ribosomal subunit	3.31E-03
29	GO:0022625: cytosolic large ribosomal subunit	4.62E-03
30	GO:0000311: plastid large ribosomal subunit	4.99E-03
31	GO:0032040: small-subunit processome	4.99E-03
32	GO:0030076: light-harvesting complex	6.41E-03
33	GO:0009654: photosystem II oxygen evolving complex	7.95E-03
34	GO:0042651: thylakoid membrane	7.95E-03
35	GO:0009532: plastid stroma	8.49E-03
36	GO:0019898: extrinsic component of membrane	1.33E-02
37	GO:0009523: photosystem II	1.33E-02
38	GO:0009707: chloroplast outer membrane	2.19E-02
39	GO:0015934: large ribosomal subunit	2.42E-02