GO Enrichment Analysis of Co-expressed Genes with
AT2G39435
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 2 | GO:0006511: ubiquitin-dependent protein catabolic process | 7.85E-09 |
| 3 | GO:0030163: protein catabolic process | 5.41E-07 |
| 4 | GO:0043248: proteasome assembly | 1.33E-05 |
| 5 | GO:0009612: response to mechanical stimulus | 1.91E-05 |
| 6 | GO:1900424: regulation of defense response to bacterium | 7.23E-05 |
| 7 | GO:0031124: mRNA 3'-end processing | 1.74E-04 |
| 8 | GO:0002215: defense response to nematode | 1.74E-04 |
| 9 | GO:0050688: regulation of defense response to virus | 1.74E-04 |
| 10 | GO:0006568: tryptophan metabolic process | 1.74E-04 |
| 11 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.99E-04 |
| 12 | GO:0010498: proteasomal protein catabolic process | 2.93E-04 |
| 13 | GO:0090630: activation of GTPase activity | 2.93E-04 |
| 14 | GO:0002679: respiratory burst involved in defense response | 4.23E-04 |
| 15 | GO:0010255: glucose mediated signaling pathway | 4.23E-04 |
| 16 | GO:0071786: endoplasmic reticulum tubular network organization | 4.23E-04 |
| 17 | GO:0033320: UDP-D-xylose biosynthetic process | 5.65E-04 |
| 18 | GO:0005513: detection of calcium ion | 7.14E-04 |
| 19 | GO:0042732: D-xylose metabolic process | 8.73E-04 |
| 20 | GO:0042176: regulation of protein catabolic process | 8.73E-04 |
| 21 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 8.73E-04 |
| 22 | GO:0001731: formation of translation preinitiation complex | 8.73E-04 |
| 23 | GO:0048827: phyllome development | 8.73E-04 |
| 24 | GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation | 8.73E-04 |
| 25 | GO:0009817: defense response to fungus, incompatible interaction | 9.46E-04 |
| 26 | GO:0046686: response to cadmium ion | 1.07E-03 |
| 27 | GO:0006491: N-glycan processing | 1.40E-03 |
| 28 | GO:0048766: root hair initiation | 1.40E-03 |
| 29 | GO:0050821: protein stabilization | 1.40E-03 |
| 30 | GO:0009932: cell tip growth | 1.59E-03 |
| 31 | GO:0045454: cell redox homeostasis | 1.72E-03 |
| 32 | GO:0046685: response to arsenic-containing substance | 1.80E-03 |
| 33 | GO:0006379: mRNA cleavage | 1.80E-03 |
| 34 | GO:0043067: regulation of programmed cell death | 2.01E-03 |
| 35 | GO:0046856: phosphatidylinositol dephosphorylation | 2.46E-03 |
| 36 | GO:0072593: reactive oxygen species metabolic process | 2.46E-03 |
| 37 | GO:0043085: positive regulation of catalytic activity | 2.46E-03 |
| 38 | GO:0048765: root hair cell differentiation | 2.46E-03 |
| 39 | GO:0006378: mRNA polyadenylation | 2.46E-03 |
| 40 | GO:0006790: sulfur compound metabolic process | 2.70E-03 |
| 41 | GO:0009553: embryo sac development | 2.78E-03 |
| 42 | GO:0006446: regulation of translational initiation | 3.19E-03 |
| 43 | GO:0009225: nucleotide-sugar metabolic process | 3.44E-03 |
| 44 | GO:0007031: peroxisome organization | 3.44E-03 |
| 45 | GO:0046854: phosphatidylinositol phosphorylation | 3.44E-03 |
| 46 | GO:0010053: root epidermal cell differentiation | 3.44E-03 |
| 47 | GO:0000162: tryptophan biosynthetic process | 3.71E-03 |
| 48 | GO:0034976: response to endoplasmic reticulum stress | 3.71E-03 |
| 49 | GO:0000027: ribosomal large subunit assembly | 3.98E-03 |
| 50 | GO:0006406: mRNA export from nucleus | 3.98E-03 |
| 51 | GO:0009651: response to salt stress | 4.11E-03 |
| 52 | GO:0015992: proton transport | 4.54E-03 |
| 53 | GO:0010431: seed maturation | 4.54E-03 |
| 54 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.83E-03 |
| 55 | GO:0080092: regulation of pollen tube growth | 4.83E-03 |
| 56 | GO:0010227: floral organ abscission | 5.13E-03 |
| 57 | GO:0010154: fruit development | 6.38E-03 |
| 58 | GO:0006662: glycerol ether metabolic process | 6.38E-03 |
| 59 | GO:0010183: pollen tube guidance | 7.04E-03 |
| 60 | GO:0016579: protein deubiquitination | 9.16E-03 |
| 61 | GO:0009816: defense response to bacterium, incompatible interaction | 9.92E-03 |
| 62 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.07E-02 |
| 63 | GO:0010411: xyloglucan metabolic process | 1.07E-02 |
| 64 | GO:0010043: response to zinc ion | 1.27E-02 |
| 65 | GO:0000724: double-strand break repair via homologous recombination | 1.32E-02 |
| 66 | GO:0016051: carbohydrate biosynthetic process | 1.36E-02 |
| 67 | GO:0034599: cellular response to oxidative stress | 1.40E-02 |
| 68 | GO:0009926: auxin polar transport | 1.63E-02 |
| 69 | GO:0042546: cell wall biogenesis | 1.67E-02 |
| 70 | GO:0009846: pollen germination | 1.91E-02 |
| 71 | GO:0006486: protein glycosylation | 2.01E-02 |
| 72 | GO:0048316: seed development | 2.31E-02 |
| 73 | GO:0009626: plant-type hypersensitive response | 2.37E-02 |
| 74 | GO:0009555: pollen development | 2.48E-02 |
| 75 | GO:0009790: embryo development | 3.38E-02 |
| 76 | GO:0006413: translational initiation | 3.63E-02 |
| 77 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.94E-02 |
| 78 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.13E-02 |
| 79 | GO:0006470: protein dephosphorylation | 4.19E-02 |
| 80 | GO:0009617: response to bacterium | 4.32E-02 |
| 81 | GO:0006508: proteolysis | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 2 | GO:0004298: threonine-type endopeptidase activity | 6.17E-10 |
| 3 | GO:0008233: peptidase activity | 1.42E-05 |
| 4 | GO:0004190: aspartic-type endopeptidase activity | 1.64E-04 |
| 5 | GO:0051731: polynucleotide 5'-hydroxyl-kinase activity | 1.74E-04 |
| 6 | GO:0004640: phosphoribosylanthranilate isomerase activity | 1.74E-04 |
| 7 | GO:0051879: Hsp90 protein binding | 1.74E-04 |
| 8 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 2.93E-04 |
| 9 | GO:0047134: protein-disulfide reductase activity | 3.59E-04 |
| 10 | GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | 4.23E-04 |
| 11 | GO:0004791: thioredoxin-disulfide reductase activity | 4.49E-04 |
| 12 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.59E-04 |
| 13 | GO:0031593: polyubiquitin binding | 8.73E-04 |
| 14 | GO:0036402: proteasome-activating ATPase activity | 8.73E-04 |
| 15 | GO:0048040: UDP-glucuronate decarboxylase activity | 8.73E-04 |
| 16 | GO:0070403: NAD+ binding | 1.04E-03 |
| 17 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.04E-03 |
| 18 | GO:0004559: alpha-mannosidase activity | 1.04E-03 |
| 19 | GO:0004722: protein serine/threonine phosphatase activity | 1.94E-03 |
| 20 | GO:0008047: enzyme activator activity | 2.23E-03 |
| 21 | GO:0030234: enzyme regulator activity | 2.23E-03 |
| 22 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.19E-03 |
| 23 | GO:0017025: TBP-class protein binding | 3.44E-03 |
| 24 | GO:0004725: protein tyrosine phosphatase activity | 3.71E-03 |
| 25 | GO:0016887: ATPase activity | 3.90E-03 |
| 26 | GO:0043130: ubiquitin binding | 3.98E-03 |
| 27 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 4.54E-03 |
| 28 | GO:0003756: protein disulfide isomerase activity | 5.43E-03 |
| 29 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 7.38E-03 |
| 30 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 7.38E-03 |
| 31 | GO:0004518: nuclease activity | 7.72E-03 |
| 32 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.07E-03 |
| 33 | GO:0008237: metallopeptidase activity | 8.79E-03 |
| 34 | GO:0008375: acetylglucosaminyltransferase activity | 1.03E-02 |
| 35 | GO:0004721: phosphoprotein phosphatase activity | 1.07E-02 |
| 36 | GO:0005096: GTPase activator activity | 1.19E-02 |
| 37 | GO:0000166: nucleotide binding | 2.48E-02 |
| 38 | GO:0015035: protein disulfide oxidoreductase activity | 2.64E-02 |
| 39 | GO:0016787: hydrolase activity | 2.96E-02 |
| 40 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.27E-02 |
| 41 | GO:0005516: calmodulin binding | 3.72E-02 |
| 42 | GO:0003743: translation initiation factor activity | 4.26E-02 |
| 43 | GO:0042802: identical protein binding | 4.52E-02 |
| 44 | GO:0005509: calcium ion binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0019867: outer membrane | 0.00E+00 |
| 3 | GO:0000502: proteasome complex | 1.82E-18 |
| 4 | GO:0005839: proteasome core complex | 6.17E-10 |
| 5 | GO:0008541: proteasome regulatory particle, lid subcomplex | 8.16E-09 |
| 6 | GO:0005829: cytosol | 2.73E-05 |
| 7 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 3.42E-05 |
| 8 | GO:0019773: proteasome core complex, alpha-subunit complex | 4.37E-05 |
| 9 | GO:0009510: plasmodesmatal desmotubule | 7.23E-05 |
| 10 | GO:0005838: proteasome regulatory particle | 2.93E-04 |
| 11 | GO:0071782: endoplasmic reticulum tubular network | 4.23E-04 |
| 12 | GO:0005849: mRNA cleavage factor complex | 4.23E-04 |
| 13 | GO:0030660: Golgi-associated vesicle membrane | 5.65E-04 |
| 14 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 5.65E-04 |
| 15 | GO:0005788: endoplasmic reticulum lumen | 7.74E-04 |
| 16 | GO:0016282: eukaryotic 43S preinitiation complex | 8.73E-04 |
| 17 | GO:0033290: eukaryotic 48S preinitiation complex | 1.04E-03 |
| 18 | GO:0031597: cytosolic proteasome complex | 1.04E-03 |
| 19 | GO:0031595: nuclear proteasome complex | 1.21E-03 |
| 20 | GO:0005783: endoplasmic reticulum | 1.36E-03 |
| 21 | GO:0000326: protein storage vacuole | 1.59E-03 |
| 22 | GO:0008540: proteasome regulatory particle, base subcomplex | 2.01E-03 |
| 23 | GO:0005765: lysosomal membrane | 2.46E-03 |
| 24 | GO:0031307: integral component of mitochondrial outer membrane | 2.70E-03 |
| 25 | GO:0005737: cytoplasm | 5.53E-03 |
| 26 | GO:0009504: cell plate | 7.04E-03 |
| 27 | GO:0016592: mediator complex | 7.72E-03 |
| 28 | GO:0005802: trans-Golgi network | 8.42E-03 |
| 29 | GO:0032580: Golgi cisterna membrane | 8.43E-03 |
| 30 | GO:0005778: peroxisomal membrane | 8.79E-03 |
| 31 | GO:0005768: endosome | 9.92E-03 |
| 32 | GO:0005774: vacuolar membrane | 1.58E-02 |
| 33 | GO:0031966: mitochondrial membrane | 1.91E-02 |
| 34 | GO:0005789: endoplasmic reticulum membrane | 1.94E-02 |
| 35 | GO:0022626: cytosolic ribosome | 2.37E-02 |
| 36 | GO:0005615: extracellular space | 4.13E-02 |